BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487186
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04070.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 2050 0.0
> AT5G04070.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:1102090-1104446 FORWARD LENGTH=1482
Length=1482
Score = 2050 bits (1110), Expect = 0.0
Identities = 1363/1477 (92%), Gaps = 49/1477 (3%)
Strand=Plus/Plus
Query 1 AAAGCCATCGATTATTCCCCAGAAAAAGTATTTGATCCTTGTATTCGGCTCTAATTTCTT 60
||| |||||||||||||||| ||||||| || | ||||||| |||||||||| |||||||
Sbjct 30 AAACCCATCGATTATTCCCCGGAAAAAGCATCTAATCCTTGCATTCGGCTCTGATTTCTT 89
Query 61 CACGAGTTCGC-AGTATCAAGTTGTTAGTCTACAGATTCTTGTTCAGGTACATGAA-TT- 117
||||||||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 90 CACGAGTTCGCAAG-ATCAAGTTGTTAGTCTACAGATTTTTGTTCAGGTACATAAATTTG 148
Query 118 -T---G-A--TGAAGGAGGCGTTGCGTTTTATATGCTCATCTAATTTCTGGAGGATGGCT 170
| | | |||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 149 ATGGAGAATTTGAAGGAGGCTTTGCGTTTTATCTGCTCATCTAATTTCTGGAGGATGG-T 207
Query 171 T-TGTTTTGGAACATTGCCCTCCTTTTTTCTTACTTCCAATTGCTTAAAAAGAGTATCTT 229
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 208 TCTGTTTTGGAACATTGCCCTCCTTTTTTCGTACTTTCAATTGCTTAAAAAGAGTATCTT 267
Query 230 TGGCTCAAAATCAAGTT-C-C-TCTTCTTGCTCCAAATCCAATCATTCACACACACCTAT 286
|| | | |||||||||| | | |||||||||||||||| ||||||||||||||||||| |
Sbjct 268 TGCCCCCAAATCAAGTTCCTCTTCTTCTTGCTCCAAATTCAATCATTCACACACACCTGT 327
Query 287 TTGTGTTATCACTGGTGCTACTTCGGGACTTGGTAAGGCCACTGCGTTTGCTCTCTCAAG 346
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 328 TTGTGTTATAACTGGTGCTACTTCGGGACTTGGTAAGGCCACTGCGTTTGCTCTTTCAAG 387
Query 347 GAAAGGTTTCTACGTTGTTCTTGTTGGAAGATCATCCCACTTACTATCAAAGACCTTGAA 406
|||||||||||||||||||||||||||| | || || ||||||||||||||||||||||
Sbjct 388 GAAAGGTTTCTACGTTGTTCTTGTTGGACGGTCCTCGCACTTACTATCAAAGACCTTGAG 447
Query 407 TGATATTAAGAGGCAGAATGAGAATGCCCAACTCAAAGCTTTTGAAGTTGACATTTCGTC 466
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 448 TGATATTAAGAGGCAGAACGAGGATGCCAAACTCAAAGCTTTTGAAGTTGACATGTCGTC 507
Query 467 TTTTCAATCAGTTTTCAAGTTCAGAAACTCTCTAGAGCAATGGCTTTTTGAATCAGATTT 526
|||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 508 TTTTCAATTAGTTTTAAAGTTCAGAAGCTCTCTAGAGCAATGGCTTTTTGAGTCAGATTT 567
Query 527 GCATTCTTCAGTCCAGCTTTTGGTGAACAATGCTGGAATACTGGCAACATCTTGTCGGCC 586
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 568 GCATTCTTCAGTCCAGCTTTTGGTGAACAATGCTGGAATACTGGCAACATCTAGTCGTCC 627
Query 587 AACCGTTGAAGGCTTTGACAGGATGATGGCTACAAATTATGTCGGCGCTTT-TACTTTGA 645
||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 628 AACTGTTGAAGGCTTTGACAGGATGATTGCTACAAATTATGTCGGCGCTTTCT-CTTTGA 686
Query 646 CCAAACTTCTCTTACCGCTCCTGAGAAACAGCCTTGTGCCTTCACGAGTTGTGAATGTTA 705
||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||
Sbjct 687 CCAAACTTCTCTTACCGCTCCTGAGAAACAGCCCTGTGCCTTCAAGAGTAGTGAATGTTA 746
Query 706 CATCTTTTACACATCGTTCTGCTTTTAGTGGGAGGTTTGACATGGATTCTGTTACTGGAG 765
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 747 CATCTTTTACACATCGTTCTGCTTTTACTGGGAGGTTTGACATGGATTCTGTTACTGGAG 806
Query 766 TGAACTTTTCGAGATCAAAGCAATATCCTTGTGCTAGGATCTATGAGTATTCTAAATTGT 825
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 807 TGAACTTTTCAAGATCAAAGCAATATCCTTGTGCTAGGATCTATGAGTATTCTAAATTAT 866
Query 826 GCCTTCTACTTTTCTCATACCAGCTGCATAGACAGCTTCGCCTCACGGATGATTCACATC 885
|||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 867 GCCTTCTACTTTTCTCGTACGAGCTGCATAGACAGCTTCACCTCATGGATGATTCACATC 926
Query 886 ACGTCTCTGTTGTAGCGGTAGATCCAGGAGCAGTAAAAACAAACATAATGCATGAGCTTC 945
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 ACATCTCTGTTGTAGCGGTAGATCCAGGAGCAGTAAAAACAAACATAATGCATGAGCTTC 986
Query 946 CTTCATATATTCAATTCATTGCGTTTTGTGGTCTCAAGATTCTTGGACTGATGCAGTCTC 1005
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CTTCATATATACAAGTCATTGCGTTTTGTGGTCTCAAGATTCTTGGACTGATGCAGTCTC 1046
Query 1006 CAGAGGATGCAGCTGAATCGGTCATTGATGCTGCTGTAGCTCCACCTGAAATATCAGGCA 1065
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1047 CAGAGGATGCAGCTGAATCTGTCATTGATGCTGCTTTAGCTCCACCTGAAATATCAGGCA 1106
Query 1066 AATATTTCTTTGGCGGAAAGGGGAGGACCATTGAATCTTCAGCGCTTTCTGGTGACCCGA 1125
|||||||||||||||| | |||||||||||||||||| | ||||| |||||||||
Sbjct 1107 AATATTTCTTTGGCGG---G---AGGACCATTGAATCTTCAACACTTTCCAGTGACCCGA 1160
Query 1126 AAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTAACGAATTGCAGCAAGCTC 1185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1161 AAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTAACGAATTGCAGCAAACTC 1220
Query 1186 ACACTTGAAGATCAAAAAGCTTCTAGTTGTTGCTTGCTAATGACATAATCCTAGGATCCA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 ACACTTGAAGATCAAAAAGCTTCTAGTTGTTGCTTGCTAATGACATAATCCTAGGATCCA 1280
Query 1246 AAC-----C---TTCTGGTTTCTTGTATAAAATCAGTTTTTGTGTTTAGTATTCCCGTCT 1297
||| | |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1281 AACTGTATCACCTTCTGGTTTCTTGTATAAAATCAGTTTTTGTGTTTAGTATTCCC-T-T 1338
Query 1298 TGTTAGCATATTTCAGTGAAACGAAGATTCTTCTTCTAAAAATTCTTTT-GTTCAGATTT 1356
|||||||| | | | || ||||||||||| || || ||||||| ||||| ||||
Sbjct 1339 -GTTAGCAT----C--T-A--CGTAGATTCTTCTTTTATAA-TTCTTTTTGTTCAAATTT 1387
Query 1357 CGTAATTGTTACCAAAAGAAAATTTTGCTTAGGGGATTTGTTGTCAACTTTTGAGCCATT 1416
| || ||||||||||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1388 CTTA-TTGTTACCAAAGGAAATTTTTGCTTAGGG-ATTTGTTGTCAACTTTTGAGCCATT 1445
Query 1417 CAACATAAA-GTATGATTAGACCAACATTCTGCTTTT 1452
|||| |||| |||||||||||||||||||||||||||
Sbjct 1446 CAACTTAAAAGTATGATTAGACCAACATTCTGCTTTT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5