BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487187
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04090.2 | Symbols: | Plant protein 1589 of unknown functio... 1504 0.0
AT3G10250.1 | Symbols: | Plant protein 1589 of unknown functio... 411 1e-113
> AT5G04090.2 | Symbols: | Plant protein 1589 of unknown function
| chr5:1105410-1108265 REVERSE LENGTH=1263
Length=1263
Score = 1504 bits (814), Expect = 0.0
Identities = 1109/1240 (89%), Gaps = 65/1240 (5%)
Strand=Plus/Plus
Query 1 ACGATTTGCTTTCGGATTCGAGTCTTCAGGTTTCTTGGGAGTTGGATACTTCTTCTGACA 60
||||||||||||| |||||||||||| ||||||||||||| |||| | ||||| |||
Sbjct 15 ACGATTTGCTTTCTGATTCGAGTCTTGAGGTTTCTTGGGAACAGGAT-C-GCTTCT-ACA 71
Query 61 GGA-A---GGGCCATGTCAAGTTTAACAGTGAGAAGGGTATCGCGTGAAGATATACAACT 116
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 72 -GATATTTCACCCATGTCAAGTTTAACAGTGAGAAGGGTATCGCGCGAAGATATACAACT 130
Query 117 GGTTCAGAATCTAATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTGGA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 131 GGTTCAGAATCTAATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTTGA 190
Query 177 CACTCTACTAGAGCAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCT 236
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CACTCTTCTAGAACAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCT 250
Query 237 TGAAGAAGAGAACCGGGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCA 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TGAAGAAGAGAACCGCGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCA 310
Query 297 GATAATGGAATATAAC-AAGCTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATC 355
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GATAATGGAATATAACGAA-CTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATC 369
Query 356 CAACCAG-AGGGGCTTCTGTCCAAAACAGGAATGGTTCTCATGTTCCATCAATGAATCAC 414
|||| | |||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 370 CAACT-GCAGGGGCTTCTGTTCGAAACAGGAATGGTTCTCATGTTCCACCAATGAATCAG 428
Query 415 CAACAATTA-TGCTATGAACGCAAGGA-CTCAGATCAATCCTCTCTTAATCTGTCAAGTC 472
||||||||| | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 429 CAACAATTACT-CTATGAACGCAAGGAAC-CAGATCAATCCTCTCCTAATCTGTCAAGTC 486
Query 473 CATACCTCAATGGAGGCTCAGCAATTAACACAAATATACCTTCTTCTGTGGAATTTTCAA 532
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 487 CATACCTCAATGGAGGCTCAGCAATTAACACAAATATACCTTCTTATGTGGACTTTTCAT 546
Query 533 CCCATTCTAGAAGAGTTGATCCTCCACCAAACTCGCTCTCCGTGCAGGCCACAAATATGC 592
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 547 CCCATTCTAGAAGAGTTGATCCTTCACCAAACTCGCTCTCCTTGCAGGCCACAAATATGC 606
Query 593 CTTTGATGCAAGGAATGATCAAGTCTGAGACTGCATATTCAAA-CTGTGCTCCGTACATG 651
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 607 CTTTGATGCAAGGAATGATCAAGTCTGAGACTGCATAT-CAAAACTGTGCTCCATACATG 665
Query 652 TATGGTGGTGAAGCACAGTCCACAGTTGGAGATGCTC-CCATTGCATCTTTCAGCAATGA 710
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 666 TATGGTGGTGAAGCACAGTCCACAGTTGGAGATG-TCACCATCGCATCTTTCAGCAATGA 724
Query 711 TTCCAGCAACCAATCCCTCAATGATCCA-TT-T-G-----G---CT--T-C-TT------ 749
|||||||||||||||||| |||||||| || | | | || | | ||
Sbjct 725 TTCCAGCAACCAATCCCTGAATGATCCTCTTGTCGATCCAGATGCTCCTACATTTGGCTC 784
Query 750 ---AGGACAACTACCTCGGAACTTCAGCCTCTCTGATCTGACAGCTGATTTTTCCCAGAA 806
||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GTTAGGACAAATTCCTCAGAACTTCAGCCTCTCTGATCTGACAGCTGATTTTTCCCAGAG 844
Query 807 TTCAGAGATTCTGGAGAGCTACGATAGATCACCATTCCTATTGGCTGATGCGGAAAATTT 866
|||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 845 TTCAGATATTCTGGAGAGCTACGAGGGATCACCGTTCCTATTGGCTGATGCTGAAAATTT 904
Query 867 CTTGGACTCTAGTGAAAGGGTAGAACCTCAAGGAGACCGCGAAAGATTGGGGACCATATC 926
| |||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 905 CCTGGACTCTAGCGAAAGGGTAGAACATCAAGGAGACCACGAAAGATTGAGGACCATATC 964
Query 927 -TGAAGGCTTCAGCTACGAAAACCTCAAGA-GCATTTAGGTTTACTACATATGGAGCTTC 984
| | |||||||| ||||||||| || || ||| ||||||||| |||| ||||| ||||
Sbjct 965 ATCA-GGCTTCAGTTACGAAAACTTCC-GAAGCAATTAGGTTTATTACACATGGAACTTC 1022
Query 985 --A--C--G-T----C-T-T-CAACTACTTGCAGGGTTTAGTCCCATGATCAGTGTACAG 1030
| | | | | | | |||||||||||||| |||| ||||||||||||||||||
Sbjct 1023 GTAGTCATGCTTTTACGTCTGCAACTACTTGCAGGATTTAATCCCATGATCAGTGTACAT 1082
Query 1031 AGATATTCTTACCTTTCGAAAGACAATTTTTGGGTG--GGAGTGAATACTAATATTATTA 1088
|||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||
Sbjct 1083 AGATATTCTTACCTTTCGAAAGACAATTTTGGGGTTCAGG-GTGATTACTAATATTATTA 1141
Query 1089 TTCTCAAGTGTAGAGAAATTTGGTTTTTATTAATAAATATTTAAGCAGCAGTTGATTTTG 1148
||||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||
Sbjct 1142 TTCTCAAGTGTAGAGAAATTTGGTTTTTAGTAATAAATATTTAAGAACCTGTTGATTTTA 1201
Query 1149 ATTGTATCATTGTATGATTTTGGATTTTGATTGTATAATC 1188
|||| ||||||||| ||| || ||||||||||||||||||
Sbjct 1202 ATTGCATCATTGTAGGATATTCGATTTTGATTGTATAATC 1241
> AT3G10250.1 | Symbols: | Plant protein 1589 of unknown function
| chr3:3167951-3170931 REVERSE LENGTH=1414
Length=1414
Score = 411 bits (222), Expect = 1e-113
Identities = 315/361 (87%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 70 ATGTCAAGTTTAACAGTGAGAAGGGTATCGCGTGAAGATATACAACTGGTTCAGAATCTA 129
||||| ||| ||||||||||||||| || ||| ||||||||||||||||||| || ||
Sbjct 122 ATGTCGAGTGGAACAGTGAGAAGGGTTTCACGTCAAGATATACAACTGGTTCAAAACCTT 181
Query 130 ATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTGGACACTCTACTAGAG 189
|| ||||||||||| || ||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 182 ATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTGGATACTTTACTAGAG 241
Query 190 CAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAGAAC 249
|||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 242 CAGGCTAAAATCGAGCCTGGGTTCACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAGAAT 301
Query 250 CGGGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGATAATGGAATAT 309
||||| |||||||| || || ||||| ||||| ||||| || |||||||||||||||| |
Sbjct 302 CGGGAGTTTTTCAAAGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAAT-T 360
Query 310 -AACAAGCTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCAACCAGAGGGGC 368
|||||| |||||||||||||| | |||||||||| |||||||||||||| | | ||
Sbjct 361 CAACAAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTGGTGTTGC 420
Query 369 TTCTGTCCAAAACAGGAATGGTTCTCATGTTCCATCAATGAATCACCAACAATTATGCTA 428
|||||||||||||| |||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 421 TTCTGTCCAAAACACAAATGGTTCTCATCTTCAATCAATGAATCAGAAACAATTATGCTA 480
Query 429 T 429
|
Sbjct 481 T 481
Score = 189 bits (102), Expect = 5e-47
Identities = 178/214 (83%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 739 TTTGGCTTCTTAGGACAACTACCTCGGAACTTCAGCCTCTCTGATCTGACAGCTGATTTT 798
||||| |||||||| ||| | ||||| ||||| |||||||||||| |||| |||||||||
Sbjct 872 TTTGGGTTCTTAGGTCAAATTCCTCGTAACTTTAGCCTCTCTGATTTGACTGCTGATTTT 931
Query 799 TCCCAGAATTCAGAGATTCTGGAGAGCTACGATAGATCACCATTCCTAT-TGGCTGA-TG 856
|| |||| |||||||||||||||||||||||||||||||| ||||| | || | || ||
Sbjct 932 TCTCAGAGCTCAGAGATTCTGGAGAGCTACGATAGATCACCCTTCCT-TGTGCC-GAATG 989
Query 857 CGGAAAATTTCTTGGACTCTAGTGAAAG-GGTAGAACCTCAAGGAGACCGCGAA-AGATT 914
| ||||| ||| ||||||| |||| || || |||| |||||||||| | || |||||
Sbjct 990 CTGAAAACTTCCTGGACTCCCGTGACAGAGG-AGAATATCAAGGAGACAAC-AAGAGATT 1047
Query 915 GGGGACCATATCTGAAGGCTTCAGCTACGAAAAC 948
|| |||||||||||||| ||||| ||||| |||
Sbjct 1048 GGATACCATATCTGAAGGTTTCAGTTACGATAAC 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5