BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487196
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04160.1 | Symbols: | Nucleotide-sugar transporter family p... 2008 0.0
AT3G10290.1 | Symbols: | Nucleotide-sugar transporter family p... 1085 0.0
> AT5G04160.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr5:1142782-1144912 REVERSE LENGTH=1316
Length=1316
Score = 2008 bits (1087), Expect = 0.0
Identities = 1247/1322 (94%), Gaps = 20/1322 (2%)
Strand=Plus/Plus
Query 1 CTTGCCGTTCCATGCTCCAAGTAAGGACCTGATTtctctcg--ttctc--tctctctctc 56
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1 CTTGCCGTTCCATGCTCCAAGTAAGGACCTGATTTCTCTCGTTTTCTCTTTCTCTCTCTC 60
Query 57 tcat-tctc--t-TC-CAACGAAATCTCGATCTCGTCGAGGAAGAAGAAGAACCCAGATC 111
|| | |||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TC-TCTCTCATTCTCTCAACGAAATCTCGATCTCGTCGAGGAAGAAGAAGAACCCAGATC 119
Query 112 AG-AAACA-CACAACAATGTCGTCGTCTTCAAAGAAACAAACTTTATTCATATCGACACT 169
|| ||||| |||||||||||||||||| | ||||||||||| | |||||||||||| |
Sbjct 120 AGAAAACATAACAACAATGTCGTCGTCTGCGAAGAAACAAACCCTGTTCATATCGACATT 179
Query 170 AATCATCTCATGGTACTCTTCAAACATCGGTGTTCTTCTCCTCAACAAGTTCCTCCTCTC 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 AATCATCTCATGGTACTCTTCAAACATCGGTGTTCTTCTCCTCAACAAGTTCCTTCTCTC 239
Query 230 CAATTACGGATTCAAATTCCCCATTTTCCTCACAATGTGTCACATGTCCGCTTGTGCAAT 289
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 240 GAATTACGGATTCAAATTCCCGATTTTTCTCACAATGTGTCACATGTCCGCTTGCGCTAT 299
Query 290 CCTTAGCTACATCTCCATCGTCTTCCTCAAGCTTGTTCCTCTCCAACATCTCAAATCTCG 349
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTTAGCTACATCTCCATTGTTTTCCTCAAGCTTGTTCCTCTCCAACATCTCAAATCTCG 359
Query 350 TTCCCAATTTCTCAAGGTTGCTACTCTCAGCATCGTCTTTTGTGCTTCCGTCGTCGGTGG 409
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCTCAATTCCTTAAGGTTGCTACTCTCAGCATCGTCTTTTGTGCTTCCGTCGTCGGTGG 419
Query 410 TAACATCTCGCTTCGTTACCTTCCCGTCTCTTTCAATCAAGCTGTCGGTGCTACGACGCC 469
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 420 TAACATCTCCCTTCGTTACCTTCCTGTCTCTTTCAATCAAGCCGTCGGTGCTACGACGCC 479
Query 470 GTTTTTCACCGCTCTGTTCGCTTATCTTATGACCCTTAAGAGAGAAGCTTGGGTTACTTA 529
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 GTTTTTCACGGCTCTGTTTGCTTATCTTATGACCTTTAAGAGAGAAGCTTGGGTTACTTA 539
Query 530 TGGTGCTCTCGTCCCTGTCGTTGCCGGTGTCGTCATCGCCAGTGGGGGTGAGCCAGGATT 589
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGTGCTCTCGTCCCTGTCGTCGCCGGTGTCGTCATCGCCAGTGGGGGTGAGCCAGGATT 599
Query 590 TCACTGGTTTGGGTTCATAATGTGCATTAGTGCTACGGCTGCTAGAGCCTTTAAATCTGT 649
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 600 TCACTGGTTTGGGTTCATAATGTGCATTAGTGCTACTGCGGCAAGAGCCTTTAAATCTGT 659
Query 650 TCTTCAAGGCATCTTACTTTCTTCAGAGGGGGAAAAATTGAACTCAATGAATTTGATGTT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTTCAAGGCATCTTACTTTCTTCAGAGGGGGAAAAATTGAACTCAATGAATTTGATGTT 719
Query 710 GTATATGTCTCCGATAGCTGTCATTGCTCTTCTTCCCGTCACGCTATTTATGGAACCAGA 769
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GTATATGTCTCCCATAGCTGTCATTGCTCTTCTTCCCGTTACGCTATTTATGGAACCAGA 779
Query 770 CGTGATCAGTGTGACCTTGACGCTAGCAAAACAACATCAGTATATGTGGATACTTCTTCT 829
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 780 CGTGATCAGTGTGACCTTGACGCTTGCAAAACAACATCAGTACATGTGGATACTTCTTCT 839
Query 830 GGTTAACTCGGTAATGGCTTATTCAGCCAATTTGTTGAATTTTCTGGTTACCAAACACAC 889
||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 GGTTAACTCTGTCATGGCTTATTCAGCCAATCTGTTGAATTTTCTGGTTACCAAACACAC 899
Query 890 AAGCGCCCTCACCCTCCAGGTTCTTGGAAATGCTAAAGGAGCAGTTGCAGTGGTGATTTC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AAGCGCCCTCACCCTCCAGGTTCTTGGAAATGCTAAAGGAGCAGTTGCAGTGGTGATTTC 959
Query 950 GATCTTGATCTTTCGAAACCCGGTTACGGTTATGGGAATTGGCGGGTACTCCATAACCGT 1009
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATCTTGATCTTTCAAAACCCGGTTACGGTTATGGGAATTGGCGGGTACTCCATAACCGT 1019
Query 1010 CCTTGGGGTGGTTGCTTATGGAGAGACAAAACGCAGATTTAGATGAACTTTGTCAGACAT 1069
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1020 CCTTGGGGTGGTTGCTTATGGAGAGACAAAACGCAGATTTAGATGAACTCT--CAGACAT 1077
Query 1070 TAGCAAGGGACAACATATATAGCTTTTCTATGTTTGTTTCTTCATCTGTTCAAGACTCAT 1129
||||||| || | || | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1078 TAGCAAGTGAGA-CA-ACATAGCTTCTCTATGTTTGTTTCTTCATCTGTTCAAGACTCAT 1135
Query 1130 CCTTAGGACCTGAAATATTTGGGGATTTAGGAGATGAGAATTTATCAATAGTGAtttttt 1189
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1136 CCTTAGGACCTGAAATTTTTGGGCATTTAGGAGATGAGAATTTATCAATAGTGATTTTTT 1195
Query 1190 tGTAACTATTTTATACGTATTTTATAATGTAATATGTATC-GGACTATGTTAGATTCGAT 1248
|||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| |||
Sbjct 1196 -GTAACTATTTTATACGCACTTTATCATGTAATATGTATTTGGACTATGTTAGATTTGAT 1254
Query 1249 GGTGAGATAATCATTTTTGTGT-TT-CAAAGTTAAAATACCATTTTGGCTATTTAACTTA 1306
|||||||||||||||||||||| || | ||| |||||||||||||| |||| ||||||
Sbjct 1255 GGTGAGATAATCATTTTTGTGTGTTTCCTGGTTGAAATACCATTTTGGTTATTGAACTTA 1314
Query 1307 TT 1308
||
Sbjct 1315 TT 1316
> AT3G10290.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr3:3183403-3185348 REVERSE LENGTH=1200
Length=1200
Score = 1085 bits (587), Expect = 0.0
Identities = 854/981 (87%), Gaps = 26/981 (3%)
Strand=Plus/Plus
Query 92 GAAGAAGAAGAACCCAGATCAGAAACACACAACAATGTCGTCGTCTTCA---------AA 142
||| ||||||||||||||||||||| | | || |||||||| |||||| ||
Sbjct 123 GAACAAGAAGAACCCAGATCAGAAA-TC-CGAC-ATGTCGTCTTCTTCATCTTCTCCGAA 179
Query 143 GAAACAAACTTTATTCATATCGA-CAC-TAATCA-TCTCATGGTACTCTTCAAACATCGG 199
||||||||| | |||||||| | | | |||||| |||| |||||| | || ||||||||
Sbjct 180 GAAACAAACCCTCTTCATATC-ATC-CTTAATCATTCTC-TGGTACACCTCCAACATCGG 236
Query 200 TGTTCTTCTCCTCAACAAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCCATTTTCCT 259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 TGTTCTTCTCCTCAACAAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCTATTTTCCT 296
Query 260 CACAATGTGTCACATGTCCGCTTGTGCAATCCTTAGCTACATCTCCATCGTCTTCCTCAA 319
|||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||
Sbjct 297 CACAATGTGTCACATGTCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAA 356
Query 320 GCTTGTTCCTCTCCAACATCTCAAATCTCGTTCCCAATTTCTCAAGGTTGCTACTCTCAG 379
||| || ||||||||| | |||||||||||||| || |||||||||||||| ||||||||
Sbjct 357 GCTCGTCCCTCTCCAATACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAG 416
Query 380 CATCGTCTTTTGTGCTTCCGTCGTCGGTGGTAACATCTCGCTTCGTTACCTTCCC-GTCT 438
||| ||||||||||| || ||||||||||| |||||||| |||||||| || ||| ||||
Sbjct 417 CATTGTCTTTTGTGCCTCTGTCGTCGGTGGAAACATCTCCCTTCGTTATCT-CCCTGTCT 475
Query 439 C-TTTCAATCAAGCTGTCGGTGCTACGACGCCGTTTTTCACCGCTCTGTTCGCTTATCTT 497
| ||| |||||||| || ||||||||||||||||||||||| || || ||||||||| |
Sbjct 476 CCTTT-AATCAAGCCGTTGGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATC 534
Query 498 ATGACCCTTAAGAGAGAAGCTTGGGTTACTTATGGTGCTCTCGTCCCTGTCGTTGCCGGT 557
|||||| ||||||||||||||||||| |||||||| ||||||||||| || ||| |||||
Sbjct 535 ATGACCTTTAAGAGAGAAGCTTGGGTCACTTATGGCGCTCTCGTCCCCGTTGTTACCGGT 594
Query 558 GTCGTCATCGCCAGTGGGGGTGAGCCAGGATTTCACTGGTTTGGGTTCATAATGTGCATT 617
||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 595 GTCGTTATCGCCAGTGGGGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGCATT 654
Query 618 AGTGCTACGGCTGCTAGAGCCTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCAGAG 677
|||||||| || || ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 655 AGTGCTACTGCAGCAAGAGCTTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCCGAG 714
Query 678 GGGGAAAAATTGAACTCAATGAATTTGATGTTGTATATGTCTCCGATAGCTGTCATTGCT 737
|| |||| ||||| || |||||||||||| |||| |||||||| ||||| |||||||||
Sbjct 715 GGAGAAAGGTTGAATTCGATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATTGCT 774
Query 738 CTTCTTCCCGTCACGCTATTTATGGAACCAGACGTGATCAGTGTGAC-CTTGACGCTAGC 796
||||| || ||||| | |||||||| || |||||||| |||||||| || || || |
Sbjct 775 CTTCTGCCTGTCACAATTTTTATGGAGCCGGACGTGATGAGTGTGACACTA-ACACTCGG 833
Query 797 AAAACAACATCAGTATATGTGGATACTTCTTCTGGTTAACTCGGTAATGGCTTATTCAGC 856
|| ||||||| |||| |||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 834 AAGACAACATAAGTACATGTATATACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGC 893
Query 857 CAATTTGTTGAATTTTCTGGTTACCAAACACACAAGCGCCCTCACCCTCCAGGTTCTTGG 916
||| ||||| || |||||||||||||| ||||||||||| || ||||| ||||| |||||
Sbjct 894 CAACTTGTTAAACTTTCTGGTTACCAAGCACACAAGCGCACTTACCCTGCAGGTCCTTGG 953
Query 917 AAATGCTAAAGGAGCAGTTGCAGTGGTGATTTCGATCTTGATCTTTC-GAAACCCGGTTA 975
||||||||||||||| |||||||| ||||| |||||| || | |||| |||||||||| |
Sbjct 954 AAATGCTAAAGGAGCGGTTGCAGTTGTGATATCGATCCTGCT-TTTCCGAAACCCGGTAA 1012
Query 976 CGGTTATGGGAATTGGCGGGTACTCCATAACCGTCCTTGGGGTGGTTGCTTATGGAGAGA 1035
|||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1013 CGGTGATGGGAATTGGCGGGTACAGTATAACCGTTCTCGGGGTGGTTGCTTATGGAGAGA 1072
Query 1036 CAAAACGCAGATTTAGATGAA 1056
| |||||||| ||||||||||
Sbjct 1073 CTAAACGCAGGTTTAGATGAA 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5