BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487198
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04180.1 | Symbols: ATACA3, ACA3 | alpha carbonic anhydrase ... 1524 0.0
AT5G04170.1 | Symbols: | Calcium-binding EF-hand family protei... 180 3e-44
> AT5G04180.1 | Symbols: ATACA3, ACA3 | alpha carbonic anhydrase
3 | chr5:1147648-1149284 REVERSE LENGTH=1140
Length=1140
Score = 1524 bits (825), Expect = 0.0
Identities = 1033/1124 (92%), Gaps = 51/1124 (5%)
Strand=Plus/Plus
Query 1 AGAAGAAGaa-aaaaaaaGGAAGAAACAAAAGATGAACACCATTATCCTTTTTGTAACAT 59
|||||||||| |||| || ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 17 AGAAGAAGAAGAAAATAA-GAAAAAACAAAAGATGAAAACCATTATCCTTTTTGTAACAT 75
Query 60 TTCTTGCTCTTTCTTCTTCATCTCTAGCCGATGAGACAGAGACTGAATTTCATTACAAAC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TTCTTGCTCTTTCTTCTTCATCTCTAGCCGATGAGACAGAGACTGAATTTCATTACAAAC 135
Query 120 CCGGTGAGATAGCCGATCCCTCGAAATGGAGCAGTATCAAGGCTGAATGGAAAATTTGCG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CCGGTGAGATAGCCGATCCCTCGAAATGGAGCAGTATCAAGGCTGAATGGAAAATTTGCG 195
Query 180 GGACAGGGAAGAGGCAATCGCCAATCAATCTTACTCCAGAAATAGCTCGCATTGTTCACA 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 196 GGACAGGGAAGAGGCAATCGCCAATCAATCTTACTCCAAAAATAGCTCGCATTGTTCACA 255
Query 240 ATTCTACAGAGATTCTTCAGACATATTACAAACCAGTAGAGGCTATTCTTAAGAACCGTG 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 256 ATTCTACAGAGATTCTTCAGACATATTACAAACCTGTAGAGGCTATTCTTAAGAACCGTG 315
Query 300 GATTCGACATGAAGGTTAAGTGGGAAGACGATGCAGGGAAGATCGTGATCAATGATACCG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GATTCGACATGAAGGTTAAGTGGGAAGACGATGCAGGGAAGATCGTGATCAATGATACCG 375
Query 360 ACTATAAATTGGTTCAAAGCCACTGGCACGCACCTTCAGAGCATTTTCTCAATGGACAGA 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 ACTATAAATTGGTTCAAAGCCACTGGCACGCACCTTCAGAGCATTTTCTCGATGGACAGA 435
Query 420 GATTGGCCATGGAACTTCACATGGTACACAAAAGTGAAGAAGGGCACTTGGCAGTTATCG 479
| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 436 GGTTGGCAATGGAACTTCACATGGTACACAAAAGTGTAGAAGGGCACTTGGCAGTGATTG 495
Query 480 GAGTTCTCTTCAAAGAAGGTGCACCAAATGCTTTCATTTCACGGATAATGGACAAGATCA 539
|||||||||||| |||||| | |||||||||||||||||| ||||| ||||||||||||
Sbjct 496 GAGTTCTCTTCAGAGAAGGAGAACCAAATGCTTTCATTTCGCGGATCATGGACAAGATCC 555
Query 540 ACAAGATCGCAGACGTACAAGATGGAGAGATCAGCATCGGAAAGATAGATCCAAGAGAGT 599
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 556 ATAAGATCGCAGACGTACAAGATGGAGAGGTCAGCATCGGAAAGATAGATCCAAGAGAAT 615
Query 600 TTGGATGGGATCTTACTAAA-TTTTATGAATACCGTGGATCGCTCACAACTCCTCCTTGC 658
|||||||||||||||| ||| |||||||||||| | || || ||||| ||||||||||||
Sbjct 616 TTGGATGGGATCTTAC-AAAGTTTTATGAATACAGAGGTTCTCTCACGACTCCTCCTTGC 674
Query 659 ACGGAAGATGTCATGTGGACCATCATCAACAAGGTGGGGACTGTTTCGCGTGAGCAAATT 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 675 ACGGAAGATGTCATGTGGACCATCATCAACAAGGTGGGGACTGTTTCACGTGAGCAAATT 734
Query 719 GATGTATTGACTGATGCTCGTCGCGGTGGTTATGAGAAGAACGCAAGACCGGCTCAACCG 778
||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 735 GATGTATTGACAGATGCTCGTCGCGGTGGTTATGAGAAGAACGCGAGACCAGCTCAACCT 794
Query 779 CTGAACGGACGTCTGGTTTATTTAAATGAGCAGTCCAGTCCAAG-CC--C---ACGACTA 832
|||||||||||||||||||||||||| ||||||||||||||||| || | ||| |||
Sbjct 795 CTGAACGGACGTCTGGTTTATTTAAACGAGCAGTCCAGTCCAAGTCCAACTCCACGGCTA 854
Query 833 CA-AATTCCACGAGTTGGTCCAGTCTAAGACAGTCTTATAGGACAAGGCAACTCCGAGCC 891
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 855 -AGAATACCACGAGTTGGTCCGGTCTAAGACAGTCTTATAGGACAAGGCAACTCCGAGCC 913
Query 892 CTAATTTCCATACaaagaaaaaaagaaaattcgaaaaaGAATTTTGAAGATGTATGTAAA 951
||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 914 CTAATTTCCATACAAAGAAAA--------TTCGGAAAAGAATTTTGAAGATGTATGAAAA 965
Query 952 TTGGGGGCCATAACTAATTTTTTA-AACTA--C----GC--AA----TA----T------ 988
||||| |||||||||| |||||| ||||| | | || || |
Sbjct 966 TTGGGAGCCATAACTATTTTTTTTTAACTATTCTTTTGATTAAAAGATAAAACTACGCAA 1025
Query 989 TAT-AT--GCATAAAGTTTT-CTTTTATACATGTATTCCAATAAA-AAGATGTAATA-T- 1041
||| || |||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 1026 TATTATATGCATAAAGTTTTTCTTTTATACATGTATTCCAATAAACAAGATGTAATAATA 1085
Query 1042 -CCAACCATAATGAGTTGTTTGATTATTTTATAACACAAGATCT 1084
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TCCAACCATAATGAGTTGTTTGATTATTTTATAACACAAGATCT 1129
> AT5G04170.1 | Symbols: | Calcium-binding EF-hand family protein
| chr5:1145431-1147781 FORWARD LENGTH=1475
Length=1475
Score = 180 bits (97), Expect = 3e-44
Identities = 110/115 (96%), Gaps = 5/115 (4%)
Strand=Plus/Minus
Query 975 AAACTACGCAATATTATATGCATAAAG-TTTTCTTTTATACATGTATTCCAATAAA-AAG 1032
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1467 AAACTACGCAATATTATATGCATAAAGTTTTTCTTTTATACATGTATTCCAATAAACAAG 1408
Query 1033 ATGTAATA-T--CCAACCATAATGAGTTGTTTGATTATTTTATAACACAAGATCT 1084
|||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATGTAATAATATCCAACCATAATGAGTTGTTTGATTATTTTATAACACAAGATCT 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5