BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487207
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04260.1 | Symbols: WCRKC2 | WCRKC thioredoxin 2 | chr5:1178... 1016 0.0
AT5G04250.1 | Symbols: | Cysteine proteinases superfamily prot... 63.9 2e-09
> AT5G04260.1 | Symbols: WCRKC2 | WCRKC thioredoxin 2 | chr5:1178644-1180036
REVERSE LENGTH=850
Length=850
Score = 1016 bits (550), Expect = 0.0
Identities = 768/863 (89%), Gaps = 56/863 (6%)
Strand=Plus/Plus
Query 1 TGAAAGAGAATGTCAGAAGTTGTAAATTTGTCATCATCTCTGAGATCTTTAAACCCAAAG 60
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 6 TGAAAGAGAATGTCAGAAATTGTAAATTTGTCATCATCTTTGAGATCTTTAAACCCAAAG 65
Query 61 ATCTCAGCTTTGGTTCCTCCATATCTCTCTCGTCAAACCTCGAGCT-TATTCTCTCAACC 119
|||||| |||||||||||||||| ||| ||||||||||||| | ||||||| |||
Sbjct 66 ATCTCACCTTTGGTTCCTCCATA------TCGCCAAACCTCGAGCTCT-TTCTCTCGACC 118
Query 120 GAGATACTTCAAATTTCATTCTTTTACCGATAAAATCTGTTTGGCAGCGGAGAGAATCCG 179
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAGAAACTTCAAATATCATTCTTTTACCGATAAAATCTGTTTGGCAGCGGAGAGAATCCG 178
Query 180 AGCAGTCGATGCCCTGAAGCAGGACGGTGGTTTGCAAGAGCTCGATGACTCGCCGGTGTC 239
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGCAGTCGATATCCAGAAGCAGGACGGTGGTTTGCAAGAGCTCGATGACTCGCCGGTGTC 238
Query 240 CGTTGAGCTCGGACCGATCTGTGGCGAGAGCCACTTTGATCAAGTGATGGAGGAAGCTCA 299
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 239 TGTTGAGCTCGGACCTATCTGTGGTGAGAGCCACTTCGATCAAGTGATGGAGGATGCTCA 298
Query 300 GAAGCTCGGTGAATCAGTTGTTATTGTCTGGATGGCAGCTTGGTGCAGGAAATGTATTTA 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 GAAGCTCGGTGAATCAGTTGTTATTGTCTGGATGGCTGCTTGGTGCAGGAAATGTATTTA 358
Query 360 CTTGAAACCAAAACTCGAAAAGCTGGCTGCTGAATTCTATCCAAGACTGCGGTTTTATCA 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 CTTGAAACCAAAACTCGAAAAGCTCGCTGCTGAATTCTATCCAAGACTGCGGTTTTATCA 418
Query 420 TGTTGATGTCAACGCTGTGCCATATAGACTTGTTTCCCGTGCAGGAGTTACGGTAA-GCC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 419 TGTTGATGTCAACGCTGTGCCATATAGACTTGTTTCCCGTGCAGGAGTTACGAAAATGCC 478
Query 479 CTACTCTGCAGCTATGGAGAGATGGTCAGAAACAAGCTGAAGTTATCGGCGGCCACAAAG 538
|| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 479 G-ACGATTCAGCTATGGAGAGATGGCCAGAAACAAGCTGAAGTTATTGGCGGCCACAAAG 537
Query 539 CGCATTTTGTGGTTAACGAAGTCAGGGAAATGATAGAGAACGATTCAATCA---G--TTG 593
||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 538 CGCATTTCGTGGTTAACGAAGTCAGGGAAATGATAGAGAACGATTCAATCACTTGAATTG 597
Query 594 AA--TT----G--T-T--T-TT---CCTCAGATTGTTCTTAGTTTTTT-GGGGTCACTCA 637
|| || | | | | || ||||||||||||||||||||||| |||||| ||||
Sbjct 598 AAGGTTTCAAGACTCTGCTCTTTTTCCTCAGATTGTTCTTAGTTTTTTTGGGGTCCCTCA 657
Query 638 TAGGAATGTTCAGTTATGGGAGTATGTGTTCTGTA--GTTGATTGGTCTTGtttttttAT 695
|||||||||||||||||| || ||| | | || || | |||||||||||||||| ||
Sbjct 658 TAGGAATGTTCAGTTATGTGACTAT-TCT-CTTTATCGAAGATTGGTCTTGTTTTT--AT 713
Query 696 CTGTTCTTGGA-GTAAGGGA-A-ACACATTGAGGCTTTGGTA---A-GCAAGAATTGTAG 748
||||| ||| | |||||||| | ||||||||||||||||||| | |||||||||||||
Sbjct 714 CTGTT-TTGTAAGTAAGGGATACACACATTGAGGCTTTGGTAGGTAAGCAAGAATTGTAG 772
Query 749 CCATCCTATAT-CGGTTGATACCCACAAATGTAATGTAATTGTAGACTCTTACTTATTTA 807
||||||| | | | | |||| ||| |||||||||||||| | | || ||||||||
Sbjct 773 CCATCCT-TCTTCAGATGATTCCCCCAAATGTAATGTAA----A--C-CT--CTTATTTA 822
Query 808 TAAGATCAATACAACTTTTATTG 830
|||||||||||||||||||||||
Sbjct 823 TAAGATCAATACAACTTTTATTG 845
> AT5G04250.1 | Symbols: | Cysteine proteinases superfamily protein
| chr5:1176008-1178700 FORWARD LENGTH=1461
Length=1461
Score = 63.9 bits (34), Expect = 2e-09
Identities = 46/51 (90%), Gaps = 4/51 (8%)
Strand=Plus/Minus
Query 780 AATGTAATTGTAGACTCTTACTTATTTATAAGATCAATACAACTTTTATTG 830
||||||| |||| || | | |||||||||||||||||||||||||||||||
Sbjct 1456 AATGTAA-TGTAAAC-C-T-CTTATTTATAAGATCAATACAACTTTTATTG 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5