BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487209
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1661 0.0
> AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain | chr5:1192274-1195662
FORWARD LENGTH=1267
Length=1267
Score = 1661 bits (899), Expect = 0.0
Identities = 1155/1268 (91%), Gaps = 60/1268 (5%)
Strand=Plus/Plus
Query 1 TTCTTCGTGCCATTGATATTTTGAGAGGCGAAGGAAACTATACGATTCAGATAATACTTT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 20 TTCTTCGTGCCATTGATATTTTGAGAGGCGAAGGAAACAATACGATTCAG-----A---- 70
Query 61 GAGAGAAGAGTAAAAATGGCTGCGAAAGAAGGAAGTAGGATTTTTGTCGGTGGTTTATCG 120
|||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 71 GAGAGACGAGTGAAAATGGCTGCAAAAGAAGGTAGTAGGATTTTTGTCGGTGGTTTATCG 130
Query 121 CCGGAAGTGACAGAGAGAGACCTTGAACGAGCTTTTAGCCGATTCGGAGACATTCTCGAT 180
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 131 CCGGAAGTGACAGATAGAGACCTTGAAAGAGCTTTTAGCCGCTTCGGAGACATTCTCGAT 190
Query 181 TGTCAGATAATGCTGGAAAGAGATACTGGTCGTTCACGTGGATTCGGGTTTATCACTTTT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TGTCAGATCATGCTGGAAAGAGATACTGGTCGTTCACGTGGATTCGGGTTTATCACTTTT 250
Query 241 GCTGATCGTCGTGCTATGGATGAGTCCATCAGAGAGATGCATGGAAGGGACTTTGGTGAT 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GCTGATCGCCGCGCTATGGATGAGTCCATCAGAGAGATGCATGGAAGGGACTTTGGTGAT 310
Query 301 CGGGTCATCTCAGTGAACAGAGCTGAACCAAAGCTTGGGCGAGATGATGGAGAAAGTCAT 360
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 311 CGGGTCATCTCAGTGAACAGAGCTGAACCAAAACTGGGGCGAGATGATGGAGAAAGTCAT 370
Query 361 GGCTCTAGAGGTGGCAGAGACAGTGGCTACTC-AGTTACTGGAAAAGGAAGCTTTGGTGG 419
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 371 GGCTCTAGAGGTGGCAGAGACAGTGGCTACTCGA-TTGCTGGAAAAGGAAGCTTTGGTGG 429
Query 420 AGGTGGAGGTGGC------CGTGTTGCTGAAGATGAATGCTTCAAATGTGGACGGGTTGG 473
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 430 AGGTGGAGGTGGAGGTGGGCGTGTTGGTGAAGATGAATGCTTCAAGTGTGGACGGGTTGG 489
Query 474 GCACTGGGCCCGTGATTGCCCGTCTGCTGCTGGTGGTCGTGGTGGACCTGTTGGTGGTTT 533
|||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||
Sbjct 490 GCACTGGGCCCGTGATTGTCCTTCTGCTGGTGGTGGTCGTGGAGGACCTGTTGGTGGTTT 549
Query 534 TTCTTCCCGTGCTGGTGCGTTTGGAGGATCCGATGGACGTGTTGACCGCTATGCTGACCG 593
|||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 550 TTCTTCACGTGCTAGTGCGTATGGAGGATCTGATGGACGTGTTGACCGCTATGCTGACCG 609
Query 594 TGACCGCTATGTGGACCGAGAACGTTACATAGATGATCGATACGACGGCGCTGCACGCTT 653
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 610 TGACCGCTATGTGGACCGCGAACGATACATAGATGATCGATACGACGGTGCTGCACGCTA 669
Query 654 TGGTGCTAGAGACAGGTTTGACAGCAGAGAAGCCTACATACCCCGTGATCGATACGCCAG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TGGTGCTAGAGACAGGTTTGACAGCAGAGAAGCCTACATACCCCGTGATCGATACGCCAG 729
Query 714 TGACAGGTATGCAGCCCAGGCTGATAGGTTTGCAGGCGGTGATAGATACAGCCGTGGATC 773
||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 730 TGACAGGTATGCAGCCCCGGCTGATCGGTTTGCAGGTGGTGATAGATACAGCCGTGGATC 789
Query 774 AGACCGATATCCTCCAGGGAGCTATGACAAAGCCCGGTCCTTTGAGAGAGATGCAGTCCC 833
|||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 790 AGACCGTTATCCTCCAGGGAGCTATGACAAAGCTCGGTCCTTTGAGAGAGACATAGCCCC 849
Query 834 GAGTGCAGGCAGTGACAGGTACGGTGGTGGTAGAGCTGGGGGTCCCATCCGTGGAGGAG- 892
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 850 GAGTGCAGGCAGTGACAGGTACGGTGGTGGTAGAGCTGGTGGTCCCATCCGTGGAGGAGG 909
Query 893 A-AG-AGGGAAGAGGGTTTAGAAGCAGAGCCGGTGCTCCTTATGAGAGGCCAAGCCGAAG 950
| || ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 910 AGAGGAGGGAAGAGGGTTTAGAAGCAGAGCCGGTGCTCCTTATGAGAGACCGAGCAGAAG 969
Query 951 TGGTGGTGGTGGAGCTTATCCGTCGTCGTCCACTTTTGACCGTTATTAAGA--------- 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TGGTGGTGGTGGAGCTTATCCGTCGTCGTCCACTTTTGACCGTTATTAAGACACATTAAT 1029
Query 1002 GA-------TGA---TG---CTTGGTTAGAACTTTTATACACTCACTCTTGTGTGT-GCA 1047
|| ||| || |||||||||| || | ||||||||| || ||||||| ||
Sbjct 1030 GAAAGAAAGTGAGAATGATGCTTGGTTAGAGCTCT-ATACACTCAGTCGTGTGTGTTGCT 1088
Query 1048 TGTGGTAATGAATATCTCTGTAAGCGTTCTAGGTGTAAAAGACTTGTctttttc-tt-at 1105
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1089 TGTGGTAATGAATATCTCTGTAAGCGTTATAGGTGTAAAAGACTTGTCTTTTTTATTTAT 1148
Query 1106 at-t-agt--tttgcagacctgtttagctttgtattttgatcctttttttatttt-ggtt 1160
|| | | | ||||| |||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1149 ATATGATTAGTTTGCGGACCTGTTTAGCTTTGTATTTTGATCCTTTATT-ATTTTTGGTT 1207
Query 1161 tgttttgGACCATTACATGACTTTTGAGCTTCGAGTTTACATGAGTCAATGTTAAACCTT 1220
||||||||||||| ||||||||||||||||||| | || | |||||||||||||||
Sbjct 1208 TGTTTTGGACCATAACATGACTTTTGAGCTTCG--T---CA-G--TCAATGTTAAACCTT 1259
Query 1221 GCACACAT 1228
||||||||
Sbjct 1260 GCACACAT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5