BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487213
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04320.2 | Symbols: | Shugoshin C terminus | chr5:1209197-1... 1930 0.0
> AT5G04320.2 | Symbols: | Shugoshin C terminus | chr5:1209197-1212578
FORWARD LENGTH=1945
Length=1945
Score = 1930 bits (1045), Expect = 0.0
Identities = 1300/1418 (92%), Gaps = 38/1418 (3%)
Strand=Plus/Plus
Query 52 GGAAAATATGACACTGATGAAAGCCCTAGCACACCGAAATAAACTCGTCGAGTTGAGCGG 111
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 477 GGAAAACATGACACTGATGAAAGCTCTAGCACACCGAAATAAACTCGTCGAGTTGAGCGG 536
Query 112 TATTGAGATTCAGAAACTGAGGATCAACTTACGGAGTGTGCAGGAAAAGAATTTGCAGCT 171
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 TATTGAGATTCAGAAACTGAGGATTAACTTACGGAGTGTGCAGGAAAAGAATTTGCAGCT 596
Query 172 TGCGCAGGCAAACAGTCAGATGTTAGCGGAACTCAATACAAATAAAGACAGACTCAAGGA 231
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 TGCTCAGGCAAACAGTCAGATGTTAGCGGAACTCAATACAAATAGAGACAGACTCAAGGA 656
Query 232 AT-TCCAGCATGAACTTGGCTGCAAGAATGCATTACTTAAGGTCAAGAAACAGCTTGAGG 290
| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 657 -TCTCCAGCATGAACTTGGCTGCAAGAATGCTTTACTTAAAGTCAAGAAACATCTTGAGG 715
Query 291 AGCAAGCACTTCCATGTACACATCATGCATCGAAAGACAAGGTTTCAGCAAACGCTTCTG 350
|||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 716 AGCAAGTACTTCCACGTACACATCATGAATCGAAAGACAAGGTTTCAGCAAGCGCTTCTG 775
Query 351 ATGGGGATTGCATATCCTTTCAGGTGCATGACATGAAACATAAAGATACCAAGAGAAAGC 410
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 776 ATGGGGATTGCAAATCCTTTCAGGTGCATGACATAAAACATAAAGATACCAAGAGAAAGC 835
Query 411 GAACGCCAAGGATAAAACCTTCAGTATGTGCCGACGTCAAGCCAATACAC-GTGAATGAA 469
|||| ||||||||||| |||||||| ||||||||||||||||||||| | ||||||||
Sbjct 836 GAACAACAAGGATAAAATCTTCAGTAAGTGCCGACGTCAAGCCAATAC-CTGTGAATGAT 894
Query 470 TCTAACAAAAAAGCTAACAGTAAAAGAAGAGTTTCTGGAGTAATAGATACTACTGGTATC 529
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TCTAACAGTAAAGCTAACCGTAAAAGAAGAGTTTCTGGAGTAATAGATACTACTGGTATT 954
Query 530 CCCGAAGAGACCTGTCAGACTAAAGATGACATTGAAAAGGGGGTTGACAAT-GTGG--TC 586
|||||||||| |||||||||| ||||||||||||| |||||||||| | | | || |
Sbjct 955 CCCGAAGAGATCTGTCAGACTGAAGATGACATTGATAAGGGGGTTGTCTCTCGAGGGGTA 1014
Query 587 AAC-AAGA-A--G----T-TTGTTC--CT-GA--T--G--C---A-GCA--AA-CCCGGT 621
||| |||| | | | |||| | | || | | | | ||| || ||||||
Sbjct 1015 AACCAAGATATTGACAATGTTGT-CAACAAGAAGTTTGTTCCTGATGCAGCAAACCCGGT 1073
Query 622 AAAAGACAGTGTGCATCGCAAGAGGCAATGTACACGAAGGCAATCTACCAGGTTTGATGT 681
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1074 AAAAGAGAGTGTGCATCGCAAGAGGCAATGTACACGAAGGCAATCTACCAGATTTGATGT 1133
Query 682 TCAAGAAACTGAACAAACGGAAAAATTGCTCGAGATAGATGATGCCAAAGAAAGTAAAGA 741
|||||||||| ||||||||||||| ||||| ||||| |||| ||||||||||||||||||
Sbjct 1134 TCAAGAAACTAAACAAACGGAAAAGTTGCTTGAGATGGATGGTGCCAAAGAAAGTAAAGA 1193
Query 742 AACCGAAAGGCT-CTCTTTGAAAAGACGGTCTGCTCGGTTAAGGCCCGAAGAAGCTGAAC 800
||||| ||| || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1194 AACCGCAAG-CTTCTCTTTGAGAAGACGGTCTGCTCGGTTAAGGCACGAAGAAGCTGAAC 1252
Query 801 CATGTAAAAGCTTCCATGAGGGAGACGAAGTCAGAGAGACAATCAAGAGGAGAAGAGTCT 860
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1253 CATGTAAAAGCTTACATGAGGGAGACGAAGTCAGGGAGACAATCAAGAGGAGAAGAGTCT 1312
Query 861 CTTCAAGACTGTCTGCAAGGTTTGATATACAAGTACCGCAAGTGACTGAAACCTCGAATG 920
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1313 CTTTAAGACTGTCTGCAAGGTTTGATATACAAGAACCGCATGTGACTGAAACCTCGAATG 1372
Query 921 CTGATGTTGCAGGAAGCATAGTAATCGAAGAATCTGCTGGATCAAGGTCTGTAGCTGTAG 980
|||| | |||| |||||||||||||||||||||||||||||||||| || | | ||||||
Sbjct 1373 CTGACGATGCAAGAAGCATAGTAATCGAAGAATCTGCTGGATCAAGATCGGAATCTGTAG 1432
Query 981 AACCATCTGAAAGCAGAG-ATGACACAAAAGAGACAAACCGGAAACGCAGTGTCTCAACG 1039
||||||| |||||||| | |||| |||||||||| || ||||||||||||| ||||||||
Sbjct 1433 AACCATCCGAAAGCAG-GCATGAAACAAAAGAGATAACCCGGAAACGCAGTTTCTCAACG 1491
Query 1040 AGAAGACAATCAACAAAGGGTAAATCTCAAACCGATGAAGCCATAAAAGAAACAGCGACA 1099
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1492 AGAAGACAATCAACAAAGGGTAAATCTCAAACCGATGAAGCCATTAAAGAAATAGCGACA 1551
Query 1100 GACCAATCTTTGGGCAACAACATAGTTCAAGAGTGTGGTCATGAAGCAGAATCAAAGGAT 1159
|||| |||||||| ||||| ||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 1552 GACCCATCTTTGGTCAACACCATAGTTCAAGAGTGTGATCAGGAAACAGAATCAAAGGAT 1611
Query 1160 AAGCCTAAAGCTGATGAAAACGAAGGGATGACAAGAAGATCATCTGTGGGAAGACCTTCG 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1612 AAGCCTAAAGCTGATGAAAACGAAGGGATGACAAGAAGATCATCTGTGGGAAGACCATCG 1671
Query 1220 AGACATGCCGCAGAGAAAGTCCAATCATACAGAGAAGTCTCACTTAAAGTGAAGATGCGA 1279
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1672 AGACATGCCGCAGAGAAAGTCCAATCATACAGAGAAGTCTCACTTAGAGTAAAGATGCGA 1731
Query 1280 CCAAAATGCTAAGCCTCCAGCATTGTCTTGTGCTTTTGTATTCTTAATCTGCAAAATTGT 1339
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CGAAAATGCTAAATCTCCAGCATTGTCTTGTGCTTTTGTATTCTTAATCTGCAAAATTGT 1791
Query 1340 TGTTCAAAAGCTTACTCCATGCTCTTCTATGACTTT-GCCTTCTATATCTACGCTTCTGT 1398
| |||||||||||||| ||||||||| |||| |||| ||||||||||||||||| |||||
Sbjct 1792 TATTCAAAAGCTTACTTCATGCTCTTGTATGGCTTTTGCCTTCTATATCTACGCCTCTGT 1851
Query 1399 ATTTTGTCGTTACCTTCTTATGCTAATTTTTCTTGAAT 1436
||||||||||||| || |||||||||||||||||||||
Sbjct 1852 ATTTTGTCGTTACTTTATTATGCTAATTTTTCTTGAAT 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5