BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487214
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04330.1 | Symbols: | Cytochrome P450 superfamily protein |... 2351 0.0
> AT5G04330.1 | Symbols: | Cytochrome P450 superfamily protein
| chr5:1212602-1214439 REVERSE LENGTH=1761
Length=1761
Score = 2351 bits (1273), Expect = 0.0
Identities = 1501/1611 (93%), Gaps = 16/1611 (1%)
Strand=Plus/Plus
Query 34 ACTAAATCGTATCC-AAATGCATACTCTAATGACTCTCATCCTTCTTGTTCCTCTTCTTC 92
|||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 113 ACTAAATCGTATCCAAAATGCTTACTCTAATGACTCTCATCGTTCTTGTCCCTCTTCTTC 172
Query 93 TATTTCTCTTCCGCCACCT-TTTTTCATGGCGGCGGAGGCTTCGGAAACTCTACCCTCCC 151
| |||||||||| |||||| |||| | |||||| || ||||| ||||| |||||||||
Sbjct 173 TTTTTCTCTTCCCCCACCTCCTTTT-ACGGCGGCAGATGCTTCTGAAACCCTACCCTCCT 231
Query 152 GGCCCCAAAGGCTTACCCGTCATTGGAAATATTCTCATTATGAACCACTTCAACCACCGC 211
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 232 GGCCCCAAAGGCTTACCCGTCATTGGAAATATTCTCATGATGAACCAGTTTAACCACCGG 291
Query 212 GGCCTGGCCAAGCTCAGCCGTATCTACGGTGGGTTGCTCCACCTCCGCCTCGGCTTTTCC 271
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 292 GGTCTGGCCAAGCTCAGCCGTATATACGGTGGGTTGCTCCATCTCCGCCTCGGATTTTCC 351
Query 272 CACATTTTCGTCGTTTCTTCTCCTGACATCGCTCGTCAAGTCCTCCAAGTCCAAGACCAC 331
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 352 CACATTTTCGTCGTTTCTTCTCCGGACATTGCGCGTCAAGTCCTCCAAGTCCAAGACCAC 411
Query 332 GTTTTCTCAAACCGTCCCACCACAATCGCAATCCGATACTTGACATACGGTGGATCCGAT 391
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 412 GTTTTCTCAAACCGTCCCACCACAATCGCAATCCGATACTTGACCTACGGAGGATCCGAT 471
Query 392 CTTGCATTCTGCAACTACGGCCCGTTTTGGCGTAGGATGAGAAAACTGTACGTCATGATG 451
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 472 CTTGCATTCTGCAATTACGGCCCGTTTTGGCGTCGGATGAGAAAACTCTACGTCATGATG 531
Query 452 CTCTTTAGCCGTAAACGGGCCGAGTCTTGGGTCTCTGTTGATGAAGAGGTCCACAAATCG 511
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 CTCTTTAGCCGTAAACGGGCCGAGTCGTGGGTCTCTGTTGATGAAGAGGTCCACAAATCG 591
Query 512 GTCCGTTTTGTGGCTTCCAAGGTCGGGAAACCATTAAACATATGTAAACTAGCATTTTCC 571
|||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 592 GTCCGTTTAGTGGCTTCCAACGTCGGAAAACCACTAAACATATGTAAACTAGCATTTTCC 651
Query 572 TTATCAAGAGGCATAACGTTCCGAGCAGCTTTCGGTTCCTCCTCATCCACTTCTGATGAA 631
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 652 CTATCAAGAGACATAACGTTCCGAGCAGCTTTCGGTTCCTCCTCATCCACATCTGATGAA 711
Query 632 AGCCGATTAGATGAGTTCCTTGAGATCATTCAAGAGTTCTCTAAGCTCTTTGGTGAGTTT 691
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGCCGTTTGGACGAGTTCCTTGAGATCATTCAAGAGTTCTCTAAGCTCTTTGGTGAGTTT 771
Query 692 AACGTAGCAGATTATGTCCCGTCGTGGCTCAGTTGGATTGACCCGCAAGGGATAAACGGG 751
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AACGTAGCGGATTATGTCCCGTCGTGGCTCAGTTGGATTGACCCGCAAGGGATAAACGGG 831
Query 752 CGAGTTGAGAAAGCCCGAAAATCTCTGGACGGTTTCATTGAGTCCGTCATCGACGATCAC 811
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 832 CGAGTTGAGAAAGCCCGAAAATCTCTAGACGGTTTCATTGAGTCCGTCATCGATGATCAC 891
Query 812 TACTTGCACAAGAAGAAGAGAGAACATAATAACCTTGTCGAAGAGACCGATATGGTTGAT 871
| | |||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |||
Sbjct 892 T--T-GCACAAGAAGAAGAGAGAACATGATAACGTTGACGAAGAGACTGATATGGTAGAT 948
Query 872 CAATTACTTACGTTCTACGAAGAAGAAGTCAAAGTCAACACCTCAGACACCAAAATTAAT 931
||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 949 CAATTACTTGCGTTCTACGAAGAAGAAGTCAAAGTCAACAACTCAGTCACCAAAATTAAT 1008
Query 932 CTCGATAACATAAAAGGCATCATCATGGATGTGATGTTCGGAGGAACCGAGACGGTGGCA 991
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1009 CTCGATAACATAAAAGGCATCATCATGGATGTGATGTTCGGAGGAACGGAGACGGTGGCA 1068
Query 992 TTAGCAATCGAGTGGGTCCTTACGGAGCTACTCCGGAGCCCCGAGAACATGAAACGGGTC 1051
||||||||||| ||||| || || ||| ||||||||||||||||||||||||||||||||
Sbjct 1069 TTAGCAATCGAATGGGTGCTAACCGAGATACTCCGGAGCCCCGAGAACATGAAACGGGTC 1128
Query 1052 CAGGACGAGATAGCGAGTGTGGTCGGGCTTGACCGAAGGCGCGTGGAGGACACACATCTC 1111
||||||||| || |||||||||||||||||||| || |||||||||||||||| || |||
Sbjct 1129 CAGGACGAGCTAACGAGTGTGGTCGGGCTTGACAGATGGCGCGTGGAGGACACGCACCTC 1188
Query 1112 GAGAAGCTCACTTTCCTGAAGTGTACCCTTAAGGAGACCCTCCGGCTTCACCCGCCGTTC 1171
||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||| |||
Sbjct 1189 GAGAAGCTCACTTTCCTCAAGTGTATCCTCAAGGAGACCCTCCGGCTCCACCCGCCTTTC 1248
Query 1172 CCTCTCCTGCTCCACGAGACGGTGGAGGACACCGAGGTTTCCGGTTACTTCATCCCCAAG 1231
|||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 1249 CCTCTCCTCCTCCACGAGACGGTGAAGGACACTGAGATTTCCGGTTACTTCATCCCCAAG 1308
Query 1232 GGATCACGTGTGATGGTCAATACCTATGCTCTAGGGCGTGATCCGGATTCTTGGTCCGAC 1291
|| || |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1309 GGTTCGCGTGTGATGGTCAATACCTACGCTCTAGGGCGTGACCCGAATTCTTGGTCCGAC 1368
Query 1292 CCGGAAA-TTTTCAACCCGGGTAGGTTTTTGGACCCAAGTGCTCCAGACCTGAAGGGTAA 1350
||||||| |||| ||||||||||||||||| |||| | |||||| || |||||||| ||
Sbjct 1369 CCGGAAAGTTTT-AACCCGGGTAGGTTTTTAAACCCGATTGCTCCGGATCTGAAGGGGAA 1427
Query 1351 TAATTTCGAATTCGTTCCTTTCGGGTCGGGTCGGAGATCGTGCCCGGGTATGCAACTCGG 1410
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TAATTTCGAATTTGTTCCATTCGGGTCGGGTCGGAGATCGTGCCCGGGTATGCAACTCGG 1487
Query 1411 GTTGTACGCGTTTGAGCTTGCGGTTGCTCAGCTTCTACACTGCTTCACGTGGAGTTTACC 1470
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1488 GTTGTACGCATTTGAGCTTGCGGTGGCTCATCTTCTACACTGCTTCACGTGGAGTTTACC 1547
Query 1471 GGACGGTATGAAACCCGGTGACGTGGACACCGTTGAAGGGCCGGGTCTCACCGTTCCTAA 1530
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1548 GGACGGTATGAATCCCGGTGACGTCGACACCGTTGAAGGACCGGGTCTCACCGTTCCTAA 1607
Query 1531 GGCAACTCCTTTGGTGGCGGTGCCGACCACGCGCCTCCTCTGCCCCATCGTC-TCTTGAA 1589
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1608 GGCAATTCCTTTGGTGGCGGTGCCGACCACGCGCCTCCTCTGCCCCATCGTCGTCTCG-- 1665
Query 1590 TCCTGAAAAGCCTCCACCTATGAAAACAAGAGTTTTCGGAATCGGAGTAAT 1640
| ||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1666 T---GAA--GCCTCCACCTTTGAAAACAAGAGTTTTCGGAATCGGAGTAAT 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5