BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487223
Length=2206
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04420.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2784 0.0
> AT5G04420.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:1246604-1249943 REVERSE LENGTH=2025
Length=2025
Score = 2784 bits (1507), Expect = 0.0
Identities = 1745/1855 (94%), Gaps = 36/1855 (2%)
Strand=Plus/Plus
Query 367 AGTGAAGCTGTGACGTAGTCT-T-TGGTAATGGAAGAGATCAGGAAAGAAATAGATGTTG 424
|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |
Sbjct 189 AGTGAAGCTGTGACGTGGTCTCTCTGGTAATGGAAGAGATCAGGAAAGAAATAGATGTCG 248
Query 425 GTGATTGGCATTCAAATCTCGCTCACGATGAATGGACACCACTCCCTGTTTCTGGCTCTC 484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GTGATTGGCATTCAAATCTAGCTCACGATGAATGGACACCACTCCCTGTTTCTGGCTCTC 308
Query 485 GAGCATCAGCTCGCTACAAGCATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTG 544
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GAGCATCAGCTCGTTACAAGCATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTG 368
Query 545 GTGGAAGCCGTAATGGCCGATATTTATCTGATGTCCAGGTGTTTGATCTTACAAGTTTGA 604
|||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 369 GTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGGTGTTTGATCTTAGAAGTTTGA 428
Query 605 CTTGGTCTAGTTTGAAACTGATAACTGAATCATCAAGTGCTGAGAACATTCAAGAGGATG 664
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 429 CTTGGTCTAGTTTGAAACTGAAAACTGAATCATCAAGTGCTGATAACATTCAAGAGGATG 488
Query 665 ATGGTAGCAGCTTAAGGGAAGCTTTTCCTGCTATTTCAGACCACCGCATGATTAAGTGGG 724
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 489 ATGGTAGCAGCTTACGGGAAGCTTTTCCTGCTATTTCAGACCATCGCATGATTAAGTGGG 548
Query 725 GAAACAAGCTTCTTTTGATCGGGGGACACTCCAAGAAGTCATCAGATAACAT-TTCAGTG 783
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 549 GAAACAAGCTTCTTTTGATCGGGGGACACTCCAAGAAGTCATCAGATAACATGTT-AGTG 607
Query 784 CGGTTCATTGATTTGGAAACACATTTATGTGGAGTCTTTGATGTGTCTGGGAATGTTCCG 843
||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 608 CGGTTCATTGATTTGGAAACACATTCATGTGGAGTCATTGATGTGTTTGGGAATGTTCCG 667
Query 844 GCTTCACGTGGTGGACATTCCATTACACTGGTTGGATCCCGAGTTCTTGTTTTTGGTGGG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GCTTCACGTGGTGGACATTCCATTACACTGGTTGGATCCCGAGTTCTTGTTTTTGGTGGG 727
Query 904 GAAGATAAGAACAGGAGACTGCTGAATGATCTGCATGTTCTTGATCTTGAGACAATGACT 963
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 728 GAAGATAAGAACAGGAGACTGCTGAATGATCTGCATGTTCTTCATCTTGAGACAATGACT 787
Query 964 TGGGATGTTGTAGAGACAAAGCAGACACGCCCAGTTCCCAGATTTGACCACACAGCTGCC 1023
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 788 TGGGATGTTGTAGAGACAAAGCAGACACGCCCAGTTCCCAGATTTGATCACACAGCTGCC 847
Query 1024 ACACATTCCGATCGTTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATCTTCTACAGT 1083
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 848 ACACATTCTGATCGCTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATTTTCTACAGT 907
Query 1084 GATCTTCATATCCTTGACTTGCAAACAATGGAGTGGTCACAGCCTCATGTTCAGGGAGAT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GATCTTCATATCCTTGACTTGCAAACAATGGAGTGGTCACAGCCTCATGTTCAGGGAGAT 967
Query 1144 GTTGTAACTCCTCGGGCAGGACACGCTGGAATCACCATTGACGAAAACTGGTATATAGTT 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GTTGTAACTCCTCGGGCAGGACACGCTGGAATCACCATTGACGAAAACTGGTATATAGTT 1027
Query 1204 GGGGGTGGTGATAACAGTACTGGTTGTTTAGAGACCCTTGTTCTAAATATGTCAAAGCTG 1263
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GGGGGCGGTGATAACAGTACTGGTTGTTTAGAGACCCTTGTTCTAAATATGTCAAAGCTG 1087
Query 1264 GTTTGGTCCACATCAACCCATGTAGAAGCAAGACATCCACTTGCTAGTGAGGGTCTCAGT 1323
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GTTTGGTCTACATCAACCCATGTAGAAGCAAGACATCCACTTGCTAGTGAGGGTCTCAGT 1147
Query 1324 GTATGTTCAGCATCAGTATTTGGAGAGAACATCTTAGTAGCTTTTGGCGGCTATAATGGG 1383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1148 GTATGTTCAGCATCAGTATTTGGAGAGAACATCTTAGTAGCTTTTGGCGGCTATAACGGG 1207
Query 1384 AAGTATAACAATGATATATATGTCATGAGACTAAAACCAGGAGAATCCTCACATCCCAAA 1443
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1208 AAGTATAACAATGATATATTTGTCATGAGGCTAAAACCAGGAGAATCCTCACATCCCAAA 1267
Query 1444 ATCTTTAAGTCACCAGCAGCCGCTGCAGCTGCAGCCTCTGTCACTGCTGCTTATGCCATA 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 ATCTTTAAGTCACCAGCAGCCGCTGCAGCTGCAGCCTCTGTCACTGCTGCTTATGCCATA 1327
Query 1504 GCCAAGTCAGATAAGTCAGATTATCCACCACCTGCAAATCCAACTCTCAATGGAA-TAGG 1562
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 1328 GCCAAGTCAGATAAGTCAGATTATCCTCCACCTGCAAATCCAACTCTCAATGGAAAT-GG 1386
Query 1563 AAGCAGTCTTCCTGAGAGAGATATTAGGAATAGAATCGATACCATTAAAGAAGAAAAAAG 1622
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1387 AAACAGTCTTCCTGAGAGAGATATTAGGAACAGAATCGATACCATTAAAGAAGAAAAAAG 1446
Query 1623 ATCGTTGGAATCCTCTGTTGCGGAAACCCAAGTAGAAAATGCGAAGCTCAGGGAAAAGAT 1682
| | ||||| || ||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1447 AGCATTGGAGTCATCTATTGCGGAAACTCAAGTAGAAAACGCGAAGCTCAGGGAAAAGAT 1506
Query 1683 AGATGAAGTCAATAGCAGCCACACTGAGCTATCTCAAGAACTACAATCTGTAGAAGGTCA 1742
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1507 AGATGAAGTCAATAGTAGCCACACTGAGCTATCTCAAGAACTCCAATCTGTAGAAGGTCA 1566
Query 1743 ACTTATTTCAGAACGATCAAGATGCTTTAAACTCGAGGCACAAATAGCAGAATTGCAGAA 1802
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 ACTTATTTCAGAACGGTCTAGATGCTTTAAACTCGAGGCACAAATAGCAGAATTGCAGAA 1626
Query 1803 AGCATTGGAGTCAGGGCAATCTATCGAAGCTGAAGTTGAGATGCTTAGAAGGCAGAGGTC 1862
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1627 AGCACTGGAGTCAGGGCAATCCATCGAAGCTGAAGTTGAGATGCTTAGAAGACAGAGGTC 1686
Query 1863 AGTATCTGATGAAGGAGAAGATGGGACTGTGCAAAGGCAAGGCTCTGGGGGTGTGTGGGG 1922
|| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1687 AGCGTCTGATGAAGAAGAAGACGGGACTGTGCAAAGGCAAGGCTCTGCTGGTGTGTGGGG 1746
Query 1923 TTTGTTTGGAAGGTAAATCCTAAACAATTTGGCTACACAAACACTTA-AAGCTTTGAAGA 1981
|||||||||||||||||||| ||||| |||||| ||||||| || || ||||| ||| ||
Sbjct 1747 TTTGTTTGGAAGGTAAATCCCAAACAGTTTGGCGACACAAATACCTATAAGCTCTGACGA 1806
Query 1982 TACAAACATTGGTTTATAATTCTATTTTT--GAGAATGAGAG-T-G-G-GAT--AAGGAT 2033
||||||||||||||||||||| |||||| ||||||||||| | | | | || ||
Sbjct 1807 AACAAACATTGGTTTATAATTCCATTTTTTTGAGAATGAGAGATAGAGTGGGGGAAACAT 1866
Query 2034 GTTCTTTCTTG-TTTATTATGAAAGATTCAAAATCAATTTGCTTGTTTATGAATGCTTTT 2092
|||||| ||| ||| || | |||||||||||||||||||| || ||||||||||||
Sbjct 1867 GTTCTT-CTTTATTTGTTCTCAAAGATTCAAAATCAATTTG-TT----ATGAATGCTTTT 1920
Query 2093 TGAGtttttttCCCTCCTTATTTACTGGAGATTTTACAACGAAATATCATTTCACTTTAC 2152
| | ||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 1921 T---T------CCCTC---ATTTACTAGAGATTTTACAACGAAATATCATTTCACAATG- 1967
Query 2153 TAATATGTTTA-ACCAAAGTTTCAAACAATAACAGGATCAAATAACAATTGTCAT 2206
||| ||||||| ||||| | ||| ||||||||| ||||||||||| |||||||||
Sbjct 1968 TAACATGTTTAGACCAATGATTCCAACAATAACGGGATCAAATAATAATTGTCAT 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109437188100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5