BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487225
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (lo... 2503 0.0
> AT5G04430.2 | Symbols: BTR1, BTR1L | binding to TOMV RNA 1L (long
form) | chr5:1250251-1253865 REVERSE LENGTH=1557
Length=1557
Score = 2503 bits (1355), Expect = 0.0
Identities = 1499/1564 (96%), Gaps = 27/1564 (2%)
Strand=Plus/Plus
Query 1 AAGGGAGCCTAGTGGATAGATAGACGAAGGACACCAGAG----C--CA--C-CTTCACAA 51
||||||| ||||||||||||||||||||||||||||||| | || | ||||||||
Sbjct 1 AAGGGAGGCTAGTGGATAGATAGACGAAGGACACCAGAGCCACCTTCATTCACTTCACAA 60
Query 52 ACCGCTCGGCGACAAAGACGAAGAAGCCGAGGAAGTAACGAGCGACGACGA-T-AGACTT 109
||||||||||||||||||||||||||||||||||| | ||| ||||||| | ||||||
Sbjct 61 ACCGCTCGGCGACAAAGACGAAGAAGCCGAGGAAGCACCGA--TACGACGATTGAGACTT 118
Query 110 AGTTTTGCTCAGATTCA--TATCCACCGGCGCCAATTGACGGCGACGACGACGACGGAAG 167
||||||||||||||||| || ||||||||||| | | | ||||||||||||||| |
Sbjct 119 AGTTTTGCTCAGATTCATTTAACCACCGGCGCC-A---A--GTGACGACGACGACGGAGG 172
Query 168 GAGCAGATTCGAATTGTGCGAAGACAGCAATGGAGTCTACTGAGTCATATGCGGCAGGTT 227
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GAGCAGATTCGAATTGTGTGAAGACAGCAATGGAGTCTACTGAGTCATATGCGGCAGGTT 232
Query 228 CACCGGAAGAGCTGGCGAAGAGATCCCCAGAACCGCACGATTCTTCAGAAGCTGATTCTG 287
|||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 233 CACCGGAAGAGCTGGCTAAGAGATCCCCTGAACCGCATGATTCTTCCGAAGCTGATTCTG 292
Query 288 CTGAGAAGCCAACACACATTCGGTTTCTTGTATCCAATGCGGCAGCTGGTTCCGTCATTG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CTGAGAAGCCAACACACATTCGGTTTCTTGTATCCAATGCGGCAGCTGGTTCCGTCATTG 352
Query 348 GGAAAGGTGGCTCGACCATCACTGAATTTCAGGCAAAGTCCGGGGCAAGGATTCAGCTTT 407
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 353 GGAAAGGTGGCTCGACCATCACTGAATTTCAGGCAAAGTCTGGGGCAAGGATTCAGCTTT 412
Query 408 CACGTAATCAAGAGTTTTTCCCGGGGACGACCGATAGAATTATTATGATATCGGGCTCAA 467
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 413 CACGTAATCAAGAGTTTTTCCCGGGGACGACTGACAGAATTATTATGATATCGGGATCAA 472
Query 468 TCAAAGAAGTTGTCAATGGACTGGAACTTATCCTTGATAAATTGCACAGTGAGCTTCATG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TCAAAGAAGTTGTCAATGGACTGGAACTTATCCTTGATAAATTGCACAGTGAGCTTCATG 532
Query 528 CTGAAGATGGTAATGAGGTTGAGCCTAGGAGAAGAATTAGACTTGTGGTTCCTAACAGTT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTGAAGATGGTAATGAGGTTGAGCCTAGGAGAAGAATTAGACTTGTGGTTCCTAACAGTT 592
Query 588 CTTGTGGAGGTATAATTGGAAAAGGAGGGGCCACCATCAAGTCATTCATTGAGGAATCTA 647
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTGTGGAGGTATAATCGGAAAAGGAGGGGCCACCATCAAGTCATTCATTGAGGAATCTA 652
Query 648 AAGCTGGTATTAAGATATCCCCTCTGGATAATACCTTCTACGGGTTGAGCGATAGGTTAG 707
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 653 AAGCTGGTATTAAGATATCCCCTCTGGATAATACCTTTTATGGGTTGAGCGATAGGTTAG 712
Query 708 TGACATTATCTGGGACCTTCGAGGAGCAGATGCGGGCAATCGATTTGATTTTGGCTAAGC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGACATTATCTGGGACCTTCGAGGAGCAGATGCGGGCAATCGATTTGATTTTGGCTAAGC 772
Query 768 TTACTGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGGTCTTT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTACTGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGGTCTTT 832
Query 828 TCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGG 892
Query 888 GATACAATTCAGTTAACTACGCGCCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGG 947
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 893 GATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGG 952
Query 948 ACGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGATTGGTCCTTG 1007
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 953 AAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGATTGGTGCTTG 1012
Query 1008 GACGTGGAGGAAGAAACATCATGGAAATCACTCAGATAACTGGTGCCCGAATAAAAATAT 1067
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1013 GACGTGGAGGAAGAAACATCATGGAAATCACTCAGATGACTGGTGCCCGAATTAAAATAT 1072
Query 1068 CAGACCGAGGTGATTTCATGTCTGGAACCACTGATAGGAAAGTGAGTATCACAGGGCCAC 1127
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CAGACCGAGGTGATTTTATGTCTGGAACCACTGATAGGAAAGTGAGTATCACAGGGCCAC 1132
Query 1128 AGAGAGCAATCCAACAAGCTGAGACGATGATAAAACAGAAAGTTGATTCAGCCACAGAGA 1187
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1133 AGAGAGCAATCCAACAAGCTGAGACAATGATAAAACAGAAAGTTGATTCAGCCACAGAGA 1192
Query 1188 GAGCCACCGATTAAAACCGTTAAAAGAGAATCCATCTCAGTTCCTATCTTTGGTCTGTTT 1247
|| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1193 GAACCACCGATTGAAACCGTTAA--GAGAATCCATCTCGGTTCCTATCTTTGGTCTGTTG 1250
Query 1248 ACTTCATTTGTTGAGGCTTAAGCTTTCGGATGGGGATCATTAATCATCTTTGAGTGAGGC 1307
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1251 ACTTCATTTGTGGAGGCTTAAGCTATCGGATGGGGATCATTAATCATCTTTGAGTGAGGC 1310
Query 1308 AGAGATTTCTCTCTAGGAGCTCTCTTTCGTTTTATTTATATGTCGACATTATATAATGTG 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGAGATTTCTCTCTAGGAGCTCTCTTTCGTTTTATTTATATGTCGACATTATATAATGTG 1370
Query 1368 TTTTTCTCTGGGAGAGAAGCAGATTTGGAGTTAGAAAAGTACTattttcatttgtt-ttt 1426
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1371 TTTTTCTCTGGGAGAGAAGCAGATTTGGAGTTAGAGAAGTACTATTTTCATTTGTTCTTT 1430
Query 1427 taataaatttgttgcaatttgttgaagttttgtttcccttttgagttctttctgttgtAA 1486
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1431 TAATAACTTTGTTGCAATTTGTTGAAGTTTTGTTTCCCTT--GAGTTCTTTCTGTTGTAA 1488
Query 1487 CAATTTACAATAACCAGCCTTTACATTGCATTTTGCTTCCTTCTTTTATCAACTATTTAC 1546
||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
Sbjct 1489 CAATTTACAATAACCAGCCATTACATTGCATTT-GCTTCTTTCTTTTATCAACTATTTTC 1547
Query 1547 AGTT 1550
||||
Sbjct 1548 AGTT 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5