BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487226
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04440.1 | Symbols: | Protein of unknown function (DUF1997)... 1688 0.0
> AT5G04440.1 | Symbols: | Protein of unknown function (DUF1997)
| chr5:1254844-1256953 FORWARD LENGTH=1210
Length=1210
Score = 1688 bits (914), Expect = 0.0
Identities = 1102/1189 (93%), Gaps = 28/1189 (2%)
Strand=Plus/Plus
Query 2 AATCTTATCACCTTtctctcactctctctctGCTTCGCTTCTGTGTTTAAGCTGAGCCGT 61
||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 12 AATCTTATCACGTTTCTCTCACTCTCTCTC--CTTCGCTTGTGTGTTTAAGCTAAGCCGT 69
Query 62 TAAGTCGTTAAAAATCTCGTATCCTAAAACGCCGTCGTTTTAGCTATGGCGTTGAGCTCA 121
| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 70 T-AGTCGTTAAACATCTCATATCCTAAAACGCCGTCGTTTTAGCTATGGCGTTGAGCTCA 128
Query 122 GCTACGCTTAGACTTACCTCTTTATCGTTCTCAGCGAAGAAGACGAATCGAAACCCTAGA 181
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 129 GCTACGCTTAGACTTACCTCTCTGTCGTTCTCGGCGAAGAAGACGAATCGAAACCCTAGA 188
Query 182 AATCCATCTCTCTCCTTCGCCATTACTAGCTCATCGTCTTTTGACGAACCACCTAAACCT 241
|||||| ||||||||||| |||| |||||||||||||| ||||||||| |||| ||||||
Sbjct 189 AATCCAGCTCTCTCCTTCACCATCACTAGCTCATCGTCCTTTGACGAATCACCCAAACCT 248
Query 242 TC-TCT-T-G------CCTCTTCTACGCCACCTATTCGCGTCTCATCGAGCTCCACCCCC 292
|| ||| | | ||||||||||| ||||||| |||||||| || || || ||||||
Sbjct 249 TCTTCTCTCGCCACTTCCTCTTCTACGTCACCTATACGCGTCTCCTCTAGTTCTACCCCC 308
Query 293 AAAGCTCGATTCATCGCTCGTCAGAAACAATCCATCTCCGTTCGTCAGCTCCAGCGACCT 352
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 309 AAAGCTCGATTCATCGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCT 368
Query 353 CTAATTGAGTATATGAGCTTACCAGCAAGTCAGTACTCGGTGCTTGATGCGGAGAGGATT 412
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 369 CTAATTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGAGGATT 428
Query 413 GAGAGAGTTGATGATAACACGTTCAGATGTTATGTTTATACTTTTAAATTCTTCAACTTT 472
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 429 GAGAGAGTTGATGATAACACGTTTAGATGTTATGTTTATACGTTTAAATTCTTCAACTTT 488
Query 473 GAAGTCTGCCCTGTTTTGCTTGTCAGGGTTGAAGAACAGCCTAATGGCTGCTGCATCAAG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GAAGTCTGCCCTGTTTTGCTTGTCAGGGTTGAAGAACAGCCTAATGGCTGCTGCATCAAG 548
Query 533 CTCTTGTCCTGCAAGCTTGAGGGATCCCCTGTTGTGGTTGCTCAAAATGACAAATTTGAT 592
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 549 CTCTTGTCCTGCAAGCTTGAGGGATCTCCTGTTGTGGTTGCTCAAAATGACAAATTTGAT 608
Query 593 GCTTCTATGGTGAACCGGGTATCATGTGATAGCACTCAGGAAGG-TACATCAGAGCAACA 651
||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 609 GCTTCTATGGTGAACCGGGTATCATGTGATAGCACTCAGGAGGGCT-CATCAGAGCAACA 667
Query 652 AATTACTTCTGATGCAGTCATTGAGGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTT 711
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AATTACTTCAGATGCAGTCATTGAGGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTT 727
Query 712 CCCAGTCGGAGCAATAGAGGCTACAGGGACACAAGTTCTTGATCAAATTCTTAAACTCAT 771
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 728 CCCAGTGGGAGCAATAGAGGCGACTGGGACACAAGTTCTTGATCAAATTCTTAAACTCAT 787
Query 772 GCTACCGCGATTTTTGTCACAGCTCTCGAAAGATTATCAAGCATGGGCTTCTGGAGACAC 831
|||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 788 GCTACCTCGATTTTTGTCACAGCTCTCCAAAGACTATCATGCATGGGCTTCGGGAGACAC 847
Query 832 TTCAAGGCAACCTCTTGGGACTGGCGAGATCTGACAGTAAAGCAAAAGCTAC--T--GTA 887
||||||||||||||||||||| || ||||||||| ||||||||||||||||| | |||
Sbjct 848 TTCAAGGCAACCTCTTGGGACCGGTGAGATCTGATAGTAAAGCAAAAGCTACCGTACGTA 907
Query 888 CCTGGTTCAACGATCCTGCGCCTCCTCAAGTTCAAATCGGGGATGTTAACTAATTCTCGA 947
|||||||||||||||||| |||||||| ||||||||| ||||||| || | |||||||||
Sbjct 908 CCTGGTTCAACGATCCTGTGCCTCCTCGAGTTCAAATAGGGGATGATAGCAAATTCTCGA 967
Query 948 TCTTTTTTAATGTGTTATTGGGGTAAAATGATCACAAATGAATCTGTAGTCTCTGGAATT 1007
||||||| |||||| |||| ||||||||| |||||||| |||||||||||| ||||||||
Sbjct 968 TCTTTTTCAATGTGGTATTCGGGTAAAATAATCACAAAGGAATCTGTAGTCACTGGAATT 1027
Query 1008 TCAACCATTTTCAATAGAATACGTTTGTTTGTTTGTTTGTTTCACTGTAATCTCACGGTG 1067
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1028 TCAACCCTTTTCAATAGAATACGTTTGTTTGTTTGTTC----CACTGTAATCTCACGGTG 1083
Query 1068 TGTCATGGTAAT---CCAACCGGAAGTTCCCTAAACGGATCTACCTTTGTACCAAAAATA 1124
||||||| |||| ||||||| ||||||| ||||||||||| ||||||||||||||| |
Sbjct 1084 TGTCATGTTAATGATCCAACCGAAAGTTCCTTAAACGGATCT-CCTTTGTACCAAAAA-A 1141
Query 1125 TGTGTCTGATAGAACTAAAATTGAACCGATAAATGGATGAGCCGGTTCA 1173
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 C-TGTCTGGTAGAACTAAAATTGAACCGATAAATGGATGAGCCGGTTCA 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5