BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487228
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04470.1 | Symbols: SIM | cyclin-dependent protein kinase in... 1131 0.0
> AT5G04470.1 | Symbols: SIM | cyclin-dependent protein kinase
inhibitors | chr5:1266625-1267416 REVERSE LENGTH=792
Length=792
Score = 1131 bits (612), Expect = 0.0
Identities = 722/771 (94%), Gaps = 24/771 (3%)
Strand=Plus/Plus
Query 1 AAAGACAGAAGCACATATATATAAGAAACCCACAAGTCCACTTCTCTAAGAAGATTTGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGACAGAAGCACATATATATAAGAAACCCACAAGTCCACTTCTCTAAGAAGATTTGTT 60
Query 61 CAGGCACACGCTAAAACACACAAACAAAAATAAC--C-CTTCGAGAACATATAAATTTAA 117
|||||||||||||||||||||||||||||| ||| | |||| |||||||||| ||||||
Sbjct 61 CAGGCACACGCTAAAACACACAAACAAAAA-AACAACTCTTCAAGAACATATACATTTAA 119
Query 118 TATTTATATaaaaaagaaaaaaaGAATGGATCTTGATTTAATACAAGATCTGCCCATCTT 177
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 TATTTATATAAACAA-AAAA---GAATGGATCTTGATTTAATACAAGATCTGCCCATCTT 175
Query 178 GAATTTCCCACCAGCCATCAAGATCCGAACCAACACCAACAGAGATGATGACGGCGGCGG 237
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 GAATTTCCCACCAGCCATCAAGATCCGAGCCAACACCAACAGAGATGATGACGGCGGCGG 235
Query 238 CTGCACCACTCCTACTTCCTCCGACCACAAGATTCCTCCCACCACAGCCACCACTCCTCC 297
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTGCACCACTCCCACTTCTTCCGACCACAAGATTCCTCCCACCACAGCCACCACTCCTCC 295
Query 298 TCCTCCGCCGCAGAAACCCCGTCCACCTTCTACGCCGTCGTCTCTCGGCATCAGATCTTG 357
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 296 TCCTCCACCGCAGAAACCCCGTCCACCTTCCACACCGTCGTCTCTCGGCATCAGATCTTG 355
Query 358 CAAGAGGAAGCTTATGACGTCATTATCCAAGTCGTATGAGATCATCGTCAACAAAGATGA 417
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 356 CAAGAGAAAGCTTATGACGTCATTGTCCAAGT---ATGAGATCATCGTCAACAAAGATGA 412
Query 418 GATCGAGCGGTTCTTCTCCTCCGTTTATAACCAGACGACGACGTCATccaccaccaccac 477
||||||||||||||||||||| ||||| ||||| |||| | ||||||||||||| ||
Sbjct 413 GATCGAGCGGTTCTTCTCCTCTGTTTACAACCAAACGATGGCGTCATCCACCACGAC--- 469
Query 478 caccacGGCTATCACGGTGGCCAAGCGGCGGAGAAGTTTCCGTTCTTGTTCACGAAGGTG 537
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 470 ------GGCTATCACGGTGGCCAAGCGGCGAAGAAGTTTCCGTTCTTGTTCACGAAGATG 523
Query 538 ATCAATAATTGGAAGTTTCATTAAAGGTTCCATAATTTCGAATAGCtttttcgattttta 597
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 ATCAATAATTGGACGTTTCATTAAAGGTTCCATAATTTCGAATAGCTTTTTCGATTTTTA 583
Query 598 tttatttt-atgtaatgtttttatCAACTTTACACGTCGACCCACTCTATAAATATACAT 656
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TTTATTTTTATGTAATGTTTTTATCAACTTTACACGTCGACCCACTCTATAAATATACAT 643
Query 657 GTGCGATCGATCGATGGAATCtttttttCTTTACTAAATTTTGCTAGCTGTTTTGATAAC 716
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 644 GTGCGATCGATCGATGGAATCTTTTTTTCTTTACTAAAATTTGCTAGCTGTTTTGATAAC 703
Query 717 GAATGAACAATTTCTCTG--GTTTTATTGACATCGTAAATAAATTTCCAGC 765
|||||| ||| ||| | | ||||||||||||||||||||| |||||||||
Sbjct 704 GAATGACCAAATTC-CAGTAGTTTTATTGACATCGTAAATATATTTCCAGC 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5