BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487232
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04510.1 | Symbols: PDK1, ATPDK1 | 3'-phosphoinositide-depen... 2645 0.0
AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein ... 1539 0.0
> AT5G04510.1 | Symbols: PDK1, ATPDK1 | 3'-phosphoinositide-dependent
protein kinase 1 | chr5:1286866-1289908 FORWARD LENGTH=2072
Length=2072
Score = 2645 bits (1432), Expect = 0.0
Identities = 1654/1754 (94%), Gaps = 43/1754 (2%)
Strand=Plus/Plus
Query 18 tctctgctctctctTCCCAATATTCTTCCTTTTTCATCAATCGAGATTTTCTCGCttttt 77
||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 131 TCTCTGCTCTCTCTTCCCAATATTCTTCCTTTTTCTTCAATCGAGATTTTATCGC---TT 187
Query 78 tttAATTCGAGAATTTCGAAATCGGAACCCACCACCACCACCCTCAATCATCGCCAACAG 137
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 188 TTTGATTCGAGAATTTCGAAATCGGAACCCACCACCACCACCCTCCATCGTCGCCAACAG 247
Query 138 ATCCAACGGTTCTGTGAtt-ttttt-tttGAAAAAATTGTCTTC--T-TTCT---TCT-- 187
||||||||||||| ||||| ||||| |||| |||||||||||| | |||| |||
Sbjct 248 ATCCAACGGTTCTCTGATTATTTTTATTTG--AAAATTGTCTTCTTTGTTCTCCCTCTCG 305
Query 188 C----------TC------T-CTCAATCTAAATGGGTCGTATCGAGATGTAGAAGAAAAG 230
| || | | ||||||||||||||| |||||||| |||||||||||
Sbjct 306 CTGGGTTTGATTCTGAGATTGATTAATCTAAATGGGTCGCATCGAGATTTAGAAGAAAAG 365
Query 231 GGAAATGTTGGCAATGGAGAAAGATTTTGATTCAAAGCTTGTTCTTCAAGGG-------- 282
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 366 GGAAATGTTGGCAATGGAGAAAGAATTTGATTCAAAGCTTGTTCTTCAAGGGAACTCATC 425
Query 283 -AACGGTGCTAATGTTTCCAGAAGCAAGAGCTTCTCCTTTAAAGCTCCTCAAGAAAATTT 341
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 CAACGGTGCTAATGTTTCTAGAAGCAAAAGCTTCTCCTTTAAAGCTCCTCAAGAAAATTT 485
Query 342 CACCAGCCATGATTTCGAACTTGGCAAGATCTATGGTGTTGGTTCTTACTCAAAGGTTGT 401
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 486 CACCAGCCATGATTTCGAATTTGGCAAGATCTATGGTGTTGGTTCTTACTCTAAGGTTGT 545
Query 402 TAGGGCAAAGAAGAAGGAATCTGGAACTGTGTATGCTTTAAAGATTATGGACAAAAGGTT 461
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 546 TAGGGCAAAGAAGAAGGAAACTGGAACTGTGTATGCTTTAAAGATTATGGACAAAAAGTT 605
Query 462 TATTACCAAGGAGAATAAAACAT-CTTATGTGAAATTGGAAAGGATTGTTCTTGATCAAC 520
||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 606 TATCACCAAGGAGAATAAAAC-TGCTTATGTGAAATTGGAAAGGATTGTTCTTGATCAAC 664
Query 521 TTGAACATCCTGGGATCATTAAACTATACTTCACATTTCAAGATACATCCTCACTATATA 580
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 665 TTGAACATCCTGGGATCATTAAACTTTACTTCACGTTTCAAGACACATCCTCACTATATA 724
Query 581 TGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAAATAACCAGAAAAGGTCGTC 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 725 TGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAAATAACCAGAAAAGGTCGGC 784
Query 641 TATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATAC 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATAC 844
Query 701 ATAGTATGGGACTGATACATCGAGATATTAAGCCGGAGAATCTGTTGCTGACTTCGGATG 760
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 845 ATAGTATGGGACTGATTCATCGAGATATTAAGCCGGAGAATCTGTTGCTGACTTCAGATG 904
Query 761 GGCACATTAAGATTGCGGATTTTGGTAGTGTAAAGCCGATGCAGGATAGCCAGATCACAG 820
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 905 GACACATTAAGATTGCGGATTTTGGAAGTGTAAAGCCGATGCAGGATAGCCAGATCACAG 964
Query 821 TACTTCCTAATGCAGCTTCTGACGATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATG 880
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TTCTACCTAATGCAGCTTCTGACGATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATG 1024
Query 881 TTCCTCCAGAAGTTCTCAACTCCTCTCCTGCAACTGTCGGAAATGATCTCTGGGCTCTCG 940
|||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||
Sbjct 1025 TTCCTCCAGAAGTTCTCAACTCCTCTCCCGCAACTTTCGGGAATGATCTTTGGGCTCTCG 1084
Query 941 GCTGCACTCTCTATCAAATGCTTTCAGGGACTTCTCCATTCAAAGACGCAAGTGAATGGC 1000
|||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct 1085 GCTGCACTCTCTATCAGATGCTTTCGGGGACTTCCCCATTTAAAGATGCAAGTGAATGGC 1144
Query 1001 TGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGAAG 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1145 TGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAG 1204
Query 1061 CAAGAGACCTCATCGACCGCTTACTGGATACCGATCCAAGCAGAAGACCAGGTGCTGGTT 1120
||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |
Sbjct 1205 CAAGAGACCTCATCGACCGGTTGCTGGATACCGAGCCAAGCAGAAGGCCAGGTGCTGGCT 1264
Query 1121 CAGAAGGTTATGCTGCTCTTAAGAAACATCCTTTCTTTAATGGAGTTGACTGGAAGAATC 1180
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1265 CAGAAGGTTATGTTGCTCTTAAGAGACATCCTTTCTTTAATGGAGTTGACTGGAAGAATC 1324
Query 1181 TAAGGTCCCAGACTCCTCCAAAACTAGCTCCAGATCCTGCGTCTCAGACAGCATCTCCCG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TAAGGTCCCAGACTCCTCCAAAACTAGCTCCAGATCCTGCGTCTCAGACAGCATCTCCCG 1384
Query 1241 AGAGGGATGACGCGCATGGTTCACCATGGAACCTGTCACATATTGGAGATTCTTTACCCA 1300
||||||||||| | |||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1385 AGAGGGATGACACACATGGTTCTCCATGGAACCTGACACATATTGGAGATTCTTTAGCCA 1444
Query 1301 CACAGAACGAGGGGCATAGTGCTCCTTCTACATCTTCTGAATCATCGGGTTCCATAACTC 1360
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1445 CACAGAACGAGGGGCACAGTGCTCCTCCTACATCTTCTGAATCATCGGGTTCCATAACTC 1504
Query 1361 GACTTGCTTCAATAGACTCTTTTGATTCAAGATGGCAACAGTTTTTGGAGCCAGGAGAAT 1420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1505 GACTTGCTTCAATAGACTCTTTTGATTCAAGATGGCAACAGTTTTTAGAGCCAGGAGAAT 1564
Query 1421 CAGTTCTGATGATATCAGCCGTGAAGAAGCTTCAGAAAATAACGAGCAAGAAGGTGCAGC 1480
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CGGTTCTGATGATATCAGCGGTGAAGAAGCTTCAGAAAATAACGAGCAAGAAGGTGCAGC 1624
Query 1481 TAATACTCACCAACAAACCCAAGCTGATCTATGTCGACCCGTCAAAACTAGTTGTGAAAG 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 TAATACTCACCAACAAACCCAAGCTGATCTATGTCGACCCGTCAAAACTAGTTGTGAAAG 1684
Query 1541 GAAACATTATATGGTCTGATAACTCGAATGACCTCAACGTTCTAGTCACTAGCCCTTCAC 1600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1685 GAAACATTATATGGTCTGATAACTCGAATGACCTCAACGTTGTAGTCACTAGCCCTTCAC 1744
Query 1601 ATTTCAAGATTTGCACGCCAAAGAAGGTTTTATCATTTGAAGACGCAAAACAGAGAGCTT 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 ATTTCAAGATTTGCACGCCAAAGAAGGTTTTATCATTTGAAGACGCAAAACAGAGAGCTT 1804
Query 1661 CAGTGTGGAAAAAGGCAATCGAGACTCTTCAGAACCGCTGAGATAAACTCCACTGAAGAA 1720
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1805 CAGTGTGGAAAAAGGCAATCGAGACTCTTCAGAACCGCTGAGACAAACTCCACTGAAGAA 1864
Query 1721 TGGTTCTGTTAATT 1734
||||||||||||||
Sbjct 1865 TGGTTCTGTTAATT 1878
Score = 183 bits (99), Expect = 4e-45
Identities = 115/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1733 TTAAACTGACCAAACTCCATTCTTCATATGTTTTTTGTATTACACCCACCCTTGAAAAGA 1792
|||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||
Sbjct 1912 TTAAACTGACCAAACTCCATTCTTCATATGTTTTTTCTATTTCACGCATCCTTGAAAAGA 1971
Query 1793 CCACTTCGACACAAAACTGAAAAACTGCTTTTTGAATCCTTTATATAAGTCAAACAAAAG 1852
||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1972 CCAGTTGGACACAAAACTGAAAAACTGCTTTTTGAATCCTTTGTATAAGTCAAACAAATG 2031
Query 1853 TAT 1855
|||
Sbjct 2032 TAT 2034
> AT3G10540.1 | Symbols: | 3-phosphoinositide-dependent protein
kinase | chr3:3289695-3292702 FORWARD LENGTH=1955
Length=1955
Score = 1539 bits (833), Expect = 0.0
Identities = 1304/1526 (85%), Gaps = 53/1526 (3%)
Strand=Plus/Plus
Query 202 ATGGGTCGT-ATCGAGATGTAGAAGAA-AAGGGAAATGTTGGCAATGGAGAAAGATTTTG 259
||||||| | |||| |||||||| || ||| |||||| ||||||| || || ||||
Sbjct 188 ATGGGTC-TCGTCGAAATGTAGAACAAGTTTGGAGATGTTGACAATGGACAAGGAATTTG 246
Query 260 ATTCAAAGCTTGTTCTTCAAGGG-A---A----C----GGTGCTAA-TGTTTCCAGAAGC 306
||||||||||| |||||||||| | | | |||| || | |||||||||||
Sbjct 247 ATTCAAAGCTTACTCTTCAAGGGAATTCATCTTCAAATGGTG-AAACTATTTCCAGAAGC 305
Query 307 AAGAGCTTCTCCTTTAAAGCTCCTCAAGAAAATTTCAC-CAGCCATGATTTCGAACTTGG 365
|| |||||| ||||||| |||||||| || |||||||| | |||||||||||| || ||
Sbjct 306 AAAAGCTTCGCCTTTAAGGCTCCTCAGGAGAATTTCACTTA-CCATGATTTCGAGCTCGG 364
Query 366 CAAGATCTATGGTGTTGGTTCTTACTCAAAGGTTGTTAGGGCAAAGAAGAAGGAAT-CTG 424
|||||||||||| ||||| ||||| || |||||||||||||| |||||||||| || ||
Sbjct 365 CAAGATCTATGGCGTTGGCTCTTATTCTAAGGTTGTTAGGGCGAAGAAGAAGG-ATAATG 423
Query 425 GAACTGTGTATGCTTTAAAGATTATGGACAAAAGGTTTATTACCAAGGAGAATAAAACAT 484
||||||||||||| || ||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 424 GAACTGTGTATGCCTTGAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAG 483
Query 485 CTTATGTGAAATTGGAAAGGATTGTTCTTGATCAACTTGAACATCCTGGGATCATTAAAC 544
||||||| |||||||| |||||||||||||||||||| |||||||| ||||| | ||||
Sbjct 484 CTTATGTCAAATTGGAGAGGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAAC 543
Query 545 TATACTTCACATTTCAAGATACATC-CTCACTATATATGGCACTTGAATCTTGTGAGGGT 603
| | ||| || ||||| |||||| | |||||||| ||||| ||||| |||||||| |||
Sbjct 544 TCTTCTTTACGTTTCAGGATACA-CAATCACTATACATGGCGCTTGAGTCTTGTGAAGGT 602
Query 604 GGCGAGCTTTTCGACCAAATAACCAGAAAAGGTCGTCTATCGGAGGATGAAGCTCGGTTC 663
|| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 603 GGGGAACTTTTCGACCAAATCACCAGAAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTC 662
Query 664 TACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATACATCGA 723
|||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 663 TACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGA 722
Query 724 GATATTAAGCCGGAGAATCTGTTGCTGACTTCGGATGGGCACATTAAGATTGCGGATTTT 783
|||||||||||||||||||||||| | |||| ||||||||||| |||||||| ||||||
Sbjct 723 GATATTAAGCCGGAGAATCTGTTGTTAACTTTAGATGGGCACATAAAGATTGCTGATTTT 782
Query 784 GGTAGTGTAAAGCCGATGCAGGATAGCCAGATCACAGTACTTCCTAATGCAGCTTCTGAC 843
||||| |||||||| ||||| || ||||| |||||||| ||||||||||| ||||||||
Sbjct 783 GGTAGCGTAAAGCCAATGCAAGACAGCCAAATCACAGTGCTTCCTAATGCGGCTTCTGAT 842
Query 844 GATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATGTTCCTCCAGAAGTTCTCAACTCC 903
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 843 GATAAGGCGTGCACTTTTGTCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCC 902
Query 904 TCTCCTGCAACTGT-CGGAAATGATCTCTGGGCTCTCGGCTGCACTCTCTATCAAATGCT 962
||||| ||||| || |||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 903 TCTCCAGCAAC-GTTCGGAAATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCT 961
Query 963 TTCAGGGACTTCTCCATTCAAAGACGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGC 1022
|||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 962 TTCAGGAACTTCCCCATTCAAGGATGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGC 1021
Query 1023 CAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGAAGCAAGAGACCTCATCGACCGCTT 1082
|||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 1022 TAGAGATATAAAGTTTCCAAATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATT 1081
Query 1083 ACTGGATACCGATCCAAGCAGAAGACCAGGTGCTGGTTCAGAAGGTTATGCTGCTCTTAA 1142
|| ||||| ||||| || ||||||||||| ||||| ||||||||||||| | |||| ||
Sbjct 1082 GCTAGATACAGATCCTAGTAGAAGACCAGGAGCTGGATCAGAAGGTTATGATTCTCTCAA 1141
Query 1143 GAAACATCCTTTCTTTAATGGAGTTGACTGGAAGAATCTAAGGTCCCAGACTCCTCCAAA 1202
|| |||||||||||| || ||||||||||||||||| |||||||| || |||||||||||
Sbjct 1142 GAGACATCCTTTCTTCAAGGGAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAA 1201
Query 1203 ACTAGCTCCAGATCCTGCGTCTCAGA-CAGCATCTCCCGAGAGGGATGACGCGCATGGTT 1261
|||||||||||||||||||||||| | |||||||||| |||||||| || | | |
Sbjct 1202 ACTAGCTCCAGATCCTGCGTCTCA-ATCAGCATCTCCTGAGAGGGA---CG-G--T--T- 1251
Query 1262 CACCATGGAA-CCTGTCACATATTGGAGATTCTTTACCCACACAGAACGAGGGGCATAGT 1320
| |||||||| || ||||| |||||||| | | | | |||||||| || || | |
Sbjct 1252 CTCCATGGAATCCAA-CACATGTTGGAGATACCTCAGTCTTGCAGAACGATGGACACAAT 1310
Query 1321 GCTCCTTCTACATCTTCTGAATCATCGGGTTCCATAACTCGACTTGCTTCAATAGACTCT 1380
| || ||| ||||||| || |||||||||||||| ||||| || |||||||||
Sbjct 1311 GG-------AC-TCT-CTGAATCCTCAGGTTCCATAACTCGGCTTGCCTCCATAGACTCT 1361
Query 1381 TTTGATTCAAGATGGCAACAGTTTTTGGAGCCAGGAGAATCAGTTCTGATGATATCAGCC 1440
|| ||||||||||||||||||||| | || || |||||||| ||||| |||||||||||
Sbjct 1362 TTCGATTCAAGATGGCAACAGTTTCTAGAACCGGGAGAATCGGTTCTAATGATATCAGCA 1421
Query 1441 GTGAAGAAGCTTCAGAAAATAACGAGCAAGAAGGTGCAGCTAATACTCACCAACAAACCC 1500
||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1422 GTGAAGAAGCTACAGAAAATCACAAGTAAGAAGGTGCAGCTAATACTCACCAACAAACC- 1480
Query 1501 AAG-CTGATCTATGTCGACCCGTCAAAACTAGTTGTGAAAGGAAACATTATATGGTCTGA 1559
||| ||||| || || ||||| ||||| || || || ||||| || ||||| ||||||||
Sbjct 1481 AAGACTGATATACGTTGACCCATCAAAGCTTGTAGTAAAAGGGAATATTATCTGGTCTGA 1540
Query 1560 TAACTCGAATGACCTCAACGTTCTAGTCACTAGCCCTTCACATTTCAAGATTTGCACGCC 1619
|||||| || ||||||||||||| |||| | || ||||| ||||||||||||||||| ||
Sbjct 1541 TAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACACC 1600
Query 1620 AAAGAAGGTTTTATCATTTGAAGACGCAAAACAGAGAGCTT--CAGTGTGGAAAAAGGCA 1677
||||| |||||||| |||||||| || || || ||||||| ||||| | |||||||||
Sbjct 1601 GAAGAAAGTTTTATCGTTTGAAGATGCGAAGCAAAGAGCTTTGCAGTG-G-AAAAAGGCA 1658
Query 1678 ATCGAGACTCTTCAGAACCGCTGAGA 1703
||||| |||||||| ||||| |||||
Sbjct 1659 ATCGAAACTCTTCAAAACCGTTGAGA 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91816796805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5