BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487234
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04520.1 | Symbols: | Protein of unknown function DUF455 | ... 1402 0.0
> AT5G04520.1 | Symbols: | Protein of unknown function DUF455
| chr5:1290012-1291063 REVERSE LENGTH=876
Length=876
Score = 1402 bits (759), Expect = 0.0
Identities = 829/863 (96%), Gaps = 4/863 (0%)
Strand=Plus/Plus
Query 1 ATGGATTGCGAAACCCTAATTGAATCGGCGATTAGAATTCTGAACACATCGGACCCGCAC 60
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1 ATGGATTGCGAAACCCTAATTGAATCGGCGATCAGGATTCTGAACACATCAGACCCGCAC 60
Query 61 GAAAAAGCCCGACTTGGCGATTCGATAGCTGTGAAATGGCTCCAAGGTGCAATCGCCGAA 120
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 GAAAAAGCACGACTTGGCGATTCGATAGCCGTGAAATGGCTTCAAGGTGCAATCGCCGAA 120
Query 121 CCCTACGATCCCACCGTCGATC-TCTCCGTCCCAGACAGGCCGGCTCGACTTCCGGTGAA 179
|||||||||||||||||||| | || ||||||| ||||| ||||||||||||||||||||
Sbjct 121 CCCTACGATCCCACCGTCGA-CTTCCCCGTCCCGGACAGACCGGCTCGACTTCCGGTGAA 179
Query 180 ACTGGTGTCACCGAGTTTGATGCCGAAGCTGGGAAGAGCTGGTAGCTTACAGAGCAGGCA 239
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACTGGTGTCTCCAAGTTTGATGCCGAAGCTGGGAAGAGCTGGTAGCTTACAGAGCAGGCA 239
Query 240 AGCCATTGTTCATAGTCTTGCTCATACTGAAAGCTGGGCAATTGACTTATCTTGGGATAT 299
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 240 AGCAATTGTTCATAGTCTTGCTCATACTGAAAGTTGGGCTATTGACTTATCTTGGGATAT 299
Query 300 AATTGCTCGTTTTGGCAAGCAAGAGAAGATGCCGAGAGACTTCTTTACGGATTTTGTTCG 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 AATTGCTCGTTTTGGCAAGCAAGAGAAGATGCCAAGAGACTTCTTTACGGATTTTGTTCG 359
Query 360 TGTTGCTCAGGACGAAGGTCGCCACTTCACTTTGCTCGCAGCTCGGCTTGAGGAAATTGG 419
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 360 TGTTGCTCAGGACGAAGGTCGTCACTTCACTTTGCTTGCAGCTCGGCTTGAGGAAATTGG 419
Query 420 TTCTACTTACGGTGCATTGCCTGCTCATGATGGTCTTTGGGACTCTGCTACTGCCACATC 479
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TTCTAGTTACGGTGCATTGCCTGCTCATGACGGTCTTTGGGACTCTGCTACTGCCACATC 479
Query 480 TCACGATCTTTTAGCTCGGTTGGCTATTGAGCATTGCGTTCACGAGGCTAGAGGGCTTGA 539
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TCACGATCTTTTGGCTCGTTTGGCTATAGAGCATTGCGTTCACGAGGCTAGAGGGCTTGA 539
Query 540 TGTACTGCCCACGACGATATCCCGGTTTAGGAATGGAGGCGATAACGAGACAGCAGATTT 599
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTACTGCCCACAACGATATCTCGGTTTAGGAATGGAGGCGATAACGAGACAGCAGATTT 599
Query 600 ACTAGAGAAAGTTGTGTACCCTGAAGAAATCACTCACTGTGCAGCTGGTGTAAAATGGTT 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 ACTAGAGAAAGTTGTGTACCCTGAAGAAATCACTCACTGTGCAGCTGGAGTAAAATGGTT 659
Query 660 TAAGTATCTATGTGAACGGTCCAAGGATCCAGAATTCACCATCAGCAGCAAAGAATCAGA 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TAAGTATCTATGTGAACGGTCCAAGGATCCTGAATTCACCATCAGCAGCAAAGAATCAGA 719
Query 720 TGATAGCAATCAAGAGATAATCAACAAGTTTCATTCGGTAGTAAGGGAGCATTTCAGAGG 779
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TGATAGCAATGAAGAGATAATCAACAAGTTTCATTCGGTTGTAAGGGAGCATTTCAGAGG 779
Query 780 ACCGTTGAAACCGCCTTTCAATG-TAGAAGCAAGAAAAGCTGCTGGCTTTGGCCCTCAAT 838
|||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||
Sbjct 780 ACCGTTGAAACCGCCTTTTAATGCT-GAAGCAAGAAAAGCTGCTGGCTTTGGTCCTCAAT 838
Query 839 GGTATGAACCTCTTGCTGTCAAA 861
|||||||||||||||||||||||
Sbjct 839 GGTATGAACCTCTTGCTGTCAAA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5