BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487235
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04530.1 | Symbols: KCS19 | 3-ketoacyl-CoA synthase 19 | chr... 2495 0.0
> AT5G04530.1 | Symbols: KCS19 | 3-ketoacyl-CoA synthase 19 | chr5:1291822-1293688
REVERSE LENGTH=1867
Length=1867
Score = 2495 bits (1351), Expect = 0.0
Identities = 1723/1889 (91%), Gaps = 80/1889 (4%)
Strand=Plus/Plus
Query 1 ACACAATTCACTAAATTCTCACAT-Actctctttctttttctctgtgtttctttctcttt 59
|||||||||||| ||||||||| | |||||||||| ||||| | || ||| |||
Sbjct 12 ACACAATTCACTTAATTCTCAC-TCACTCTCTTTC--CTTCTC-----TACTCTCTGTTT 63
Query 60 ctttcttccatggagctcttctcactttcttctctgctcctactctccactctcttcctc 119
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 64 CTTTCTTCCATGGAGCTCTTCTCACTCTCTTCTCTTCTCCTACTCTCCACTCTCTTCGTT 123
Query 120 ttctacatctccAAATTTGTTCTCAAAAGAAGAAACCAGAGAAAATGCTACATGCTTCAC 179
|||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 124 TTCTACATCTTCAAGTTTGTTTTCAAAAGAAGAAACCAGAGAAACTGCTACATGCTTCAC 183
Query 180 TACGAGTGCTACAAGGGCATGGACA-AGAGAAAACTCGACACCGAGACTTGTGCTAAGGT 238
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 184 TACGAGTGCTACAAGGGCATGGA-AGAGAGAAAACTCGACACCGAGACTTGTGCTAAGGT 242
Query 239 CGTTCAACGAAACAAGAACTTGGGTCTTGAAGAGTACAGGTTTCTCCTTCGTACAATGGC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 243 CGTTCAACGAAACAAGAACTTGGGTCTTGAAGAGTACAGGTTTCTCCTTCGTACTATGGC 302
Query 299 TAGTTCCGGGATTGGAGAGGAAACGTACGGTCCAAGAAACGTGCTTGAAGGTAGAGAAGA 358
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 303 TAGTTCCGGGATAGGAGAGGAAACGTACGGCCCAAGAAATGTGCTTGAAGGTAGAGAAGA 362
Query 359 CTCTCCTACTCTCCTCGATGCTCACTCCGAAATGGACGAGATCATGTTCGACACTCTCGA 418
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTCTCCTACTCTCCTTGACGCTCACTCCGAAATGGACGAGATCATGTTCGACACTCTCGA 422
Query 419 CAATCTTTTCCACAAGACAAAAGGCTCAATCTCTCCTTCAGACATCGACATTCTCGTAGT 478
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 423 CAAGCTTTTCCACAAGACAAAAGGCTCAATCTCTCCTTCAGACATTGATATTCTCGTTGT 482
Query 479 CAACGTCTCACTCTTTGCTCCATCTCCTTCTCTAACCTCACGAGTCATCAACAGATACAA 538
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 483 CAACGTCTCACTCTTCGCTCCATCTCCTTCCCTAACCTCACGAGTCATCAACAGATACAA 542
Query 539 GATGAGAGAAGACATCAAATCCTTCAACCTCTCGGGCCTAGGGTGTAGCGCGAGCGTTAT 598
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 543 GATGAGAGAAGACATCAAATCCTACAATCTCTCGGGACTAGGGTGTAGCGCGAGCGTTAT 602
Query 599 ATCGATAGATATCGTGCAAAGGATATTCGAAACTAC-TGAAAATGCTATCGCACTCGTGG 657
|||||||||||||||||||||||| ||||||||| | |||||| ||| ||||||||||||
Sbjct 603 ATCGATAGATATCGTGCAAAGGATGTTCGAAACT-CGTGAAAACGCTCTCGCACTCGTGG 661
Query 658 TTAGCACCGAGACAATGGGTCCTCACTGGTACTGCGGTAAAGATAGGTCAATGATGCTCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTAGCACCGAGACAATGGGTCCTCACTGGTACTGCGGTAAAGATAGGTCAATGATGCTCT 721
Query 718 CAAACTGTCTCTTCCGTGCCGGAGGAAGCTCTGTTCTGTTAACCAACGCAGCTCGGTTCA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 CAAACTGTCTCTTCCGTGCCGGAGGAAGCTCTGTTCTGTTAACCAACGCAGCTAGGTTCA 781
Query 778 AGAACCGGGCTTTGATGAAGCTCGTGACTGTGGTCCGGGCCCATGTGGGTTCAGACGACG 837
|||||| ||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 782 AGAACCAGGCTTTGATGAAGCTCGTGACAGTGGTCCGGGCTCATGTTGGCTCAGACGACG 841
Query 838 AGGCCTACTCGTGCTGTATGCAAATGGAGGACAGAGATGGTCATCCAGGTTTTCTCTTAA 897
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 842 AGGCCTACTCGTGCTGCATACAAATGGAGGACAGAGATGGTCATCCAGGCTTTCTCTTAA 901
Query 898 CCAAATACCTaaaaaaaGCCGCAGCTCGAGCCCTAACCAAAAACCTCCAAGTTCTCCTCC 957
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 902 CCAAATACCTAAAAAAAGCCGCAGCTCGAGCCCTAACCAAGAACCTCCAAGTTCTCCTCC 961
Query 958 CTAGAGTCTTGCCTGTCAAGGAACTGATTCGCTATGCGATAGTTCGTGCGCTTAAACGAA 1017
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 962 CTAGAGTCTTGCCTGTCAAGGAACTGATCCGCTATGCAATAGTTCGCGCGCTTAAACGAA 1021
Query 1018 GAACCACCGCGAAAAGAGAGCCTGCAAGCTCGGGGATAGGTCTAAACCTAAAAACAGGGT 1077
||||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1022 GAACCTCCGCGAAAAGAGAGCCCGCGAGCTCAGGGATAGGTCTAAACCTAAAAACAGGGT 1081
Query 1078 TGCAACATTTCTGTATTCACCCCGGAGGAAGAGCGATTATCGAAGGAGTCGGAAAAAGTT 1137
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 1082 TGCAACATTTCTGTATTCACCCGGGAGGAAGAGCGATTATCGAAGGAGTTGGGAAAAGCT 1141
Query 1138 TAGGGCTCACGGAATTCGACATCGAGCCAGCGAGAATGGCGCTTCATAGGTTCGGGAACA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TAGGGCTCACGGAATTCGACATCGAGCCAGCGAGAATGGCGCTTCATAGGTTCGGGAACA 1201
Query 1198 CGTCTTCTGGTGGTTTATGGTATGTTCTTGGTTACATGGAAGCTAAGAATAGATTAAAGA 1257
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1202 CATCTTCTGGTGGTTTATGGTATGTTCTTGGCTACATGGAAGCTAAGAACAGACTAAAGA 1261
Query 1258 AAGGTGAGAAGATACTAATGATGAGTATGGGAGCTGGATTCGAGTCTAACAATTGTGTTT 1317
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1262 AAGGTGAGAAGATACTAATGATGAGTATGGGAGCTGGATTCGAGTCTAATAATTGTGTTT 1321
Query 1318 GGGAGGTTCTTAAGGATCTTGATGATAAGAATGTTTGGGATGATTCCGTTGATCGATATC 1377
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1322 GGGAGGTTCTAAAGGATCTTGATGATAAGAATGTTTGGGAAGATTCAGTTGATCGATATC 1381
Query 1378 CGGAATTGTCGAGAATCCCTAATCCATTCGTTGAGAAGTATGATTGGATCAACGACGATA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CGGAATTGTCGAGAATCCCTAATCCATTCGTTGAGAAGTATGATTGGATCAACGACGATA 1441
Query 1438 CCATGAGCTTTGTTCGTGTTGATTGATCACAAGTAAGCA-AAGAAAAACAAGATCGAAAC 1496
|||||||||| |||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1442 CCATGAGCTTCGTTCGTGTTGATTGATCACAAGTAAGCAGAA-AATAACAAGATCG---- 1496
Query 1497 atttttatttatttttaaatatatttatCAATCAATTGGTTATAAGAAATGTTTCTTTAT 1556
| || ||||| ||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 1497 ------A-TTCTTTTT-AATATATTTGTCAATCAATT-ATTATATGAAATGTTTCTTTAT 1547
Query 1557 TAGGCGATATTTCGAAGTTTGGATTATTTGGAATGTTTAGACCAACAAGTTGCTATAGTC 1616
|||| |||||||||| ||||||||||||||||||||||| || | |||||||||
Sbjct 1548 CAGGCAATATTTCGAACTTTGGATTATTTGGAATGTTTAG----AC--G--GCTATAGTC 1599
Query 1617 GACGATTGA--ttt-tttttt--AATTTCAATTTAAAT--TTGAA--ATAAATAA--AGC 1665
||||||||| ||| |||||| ||||| || ||||| || || || ||| ||
Sbjct 1600 GACGATTGATTTTTATTTTTTAAAATTTGAA-ATAAATAATTAAAGCATGTTTAATTGGC 1658
Query 1666 ----------A---T-GTTTA--TTTTACAAATTGATTGTAGATTTTGACTAGT-AACGA 1708
| | |||| |||||||| ||||||||||| ||||||||| |||||
Sbjct 1659 GTTGTTTTGTATTTTATTTTATTTTTTACAATTTGATTGTAGA-ATTGACTAGTAAACGA 1717
Query 1709 CCAA-T--TG-CT----G-TG---TTTTAGAACAGTAACAAAAAGATTGTGTATTCAAGT 1756
|||| | || | | || ||||||||||||||| |||||| |||||||||||||
Sbjct 1718 CCAATTGGTGTGTAGAGGTTGATATTTTAGAACAGTAAC-AAAAGAGTGTGTATTCAAGT 1776
Query 1757 TGGTGCATTTATTTTGTCAGATTTGCATTATTGTGGCATACCTATTTATGAGTAAGAC-C 1815
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |
Sbjct 1777 TGGTGCATTTATTTTGTCAGAATTACATTATTGTGGCATACCCATTTATGAGTAAGACTC 1836
Query 1816 AACAATAAATCTCATGTGTGTTCACAGAT 1844
|||||||||| |||||||||||| |||||
Sbjct 1837 AACAATAAATTTCATGTGTGTTCGCAGAT 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5