BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487242
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04610.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1799 0.0
> AT5G04610.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:1325588-1326928
REVERSE LENGTH=1341
Length=1341
Score = 1799 bits (974), Expect = 0.0
Identities = 1213/1327 (91%), Gaps = 21/1327 (2%)
Strand=Plus/Plus
Query 1 AAATGGCGCTTGATGTGAAAATCTTCGAGAAAATCTCTCCTTCTCGTTTCATCTCTTTCA 60
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 11 AAATGGCGCTTGATGTGAGAATCTTCGAGAAAACCTCTCCTTCTCGTTTCATCTCTTTCA 70
Query 61 CTATCCCTAATCCGATTTCTTCGATACATCTCCTCCGCGTCGCCGTCCTCGACACGCCTG 120
|||||||||| || | |||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct 71 CTATCCCTAACCCTAATTCTCCGATTCATCTCCTCCGCGTCGCCGTCCTCGACTCGCCTG 130
Query 121 TCCATTGCACTGAGTCTTCTCCTCCCCGAGTCGCCGCCATTCTCGTCCCCAAGCACCGAG 180
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TTCATTCCACTGAGTCTTCTCCTCCCCGAGTCGCCGCCATTCTCGTCCCCAAGCACCGAG 190
Query 181 AATCCGATTGGATCTTCTCCACTGAGTCCGGCCA-TCTACAGCTCCTCCTTAATC-TCCC 238
||||||||||||||||||||||||||||||| || | ||||||| |||||||| | | ||
Sbjct 191 AATCCGATTGGATCTTCTCCACTGAGTCCGGTCAAT-TACAGCTTCTCCTTAA-CATGCC 248
Query 239 AGACATCTCTCGGTTGATCTTAATCGGTGATGATCACGACGGTGGCTCTGATTTACCCGC 298
||| |||||||| |||||||| ||||||||||||||||| || |||||||||||| ||
Sbjct 249 AGAAATCTCTCGATTGATCTTGATCGGTGATGATCACGATACTGACTCTGATTTACCTGC 308
Query 299 GGTTTACCACCGACCGA-CTGGTGAAGACGACGAATCTGAGAGTCTCGAGATGAGATTGA 357
|||||| |||||||||| | || ||||||||||||||||||| |||||||| |||||||
Sbjct 309 GGTTTATCACCGACCGAAC-GGCGAAGACGACGAATCTGAGAAACTCGAGATAAGATTGA 367
Query 358 AACCTCTTGTGGTAGCTCTGTCACCTAAAACCCTAATC-CGAGAGGAAATCGACGATGTT 416
||||||||||||||||| ||| |||||||||||||| | ||||| ||||||||||||||
Sbjct 368 AACCTCTTGTGGTAGCTTTGTTACCTAAAACCCTAA-CACGAGAAGAAATCGACGATGTG 426
Query 417 CCTTTTCTGATTTACGATGATAATGTTGTCTCTAGCGTAGTGCTGGAGAAATCCGTCGGA 476
|||||||||||||||||||||||||||||||| || |||| | | || |||| ||||||
Sbjct 427 CCTTTTCTGATTTACGATGATAATGTTGTCTCCAGTGTAGAGATTGAAAAATGCGTCGGG 486
Query 477 CCTTTCGTTGGTGAAATGCTGATTGAagatgtagagattgagattgaagacggagtaaga 536
|||||||||||||||||| | ||||||||||||||||||||||| || || ||||| |||
Sbjct 487 CCTTTCGTTGGTGAAATGTTAATTGAAGATGTAGAGATTGAGATCGATGATGGAGTTAGA 546
Query 537 gaattcaggaagagattgagatttaagagaATGCCTAATTTAGTTCAATCTGACATCAAA 596
||||| |||| ||||||||| |||||||||||||| |||||||||||||||| ||| |||
Sbjct 547 GAATTTAGGAGGAGATTGAGGTTTAAGAGAATGCCAAATTTAGTTCAATCTGCCATTAAA 606
Query 597 ATCATCCCCAGTAGTTGTTCGAATTCTTCTCTGCCATTAACGGGAACAGAGTTCAAGCTT 656
||||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 607 ATCATTCCCAGAAGTTGTTCGAATCCTTCTCTGCCATTAATGGGAACAGAGTTCAAGCTT 666
Query 657 CATCTTACGGAACTTGTGCATCCTTACTTGGCACCAATGGTGGCAAGTCTTAGCTTGATT 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GATCTTACGGAACTTGTGCATCCTTACTTGGCACCAATGGTGGCAAGTCTTAGCTTGATT 726
Query 717 GGTTCTGACATATATGAGC-TC--AAATCTAGACCAAAGGCATTGTGCATTGGAGTTGGA 773
|||||||| ||||||| | || ||||||| ||||||||||||||||||||| ||||||
Sbjct 727 GGTTCTGATGTATATGATCATCTCAAATCTAAACCAAAGGCATTGTGCATTGGGGTTGGA 786
Query 774 GGTGGTGGATTGCTTAGTTTCTTGAGGCTACAGTTAGGGTTTGAAGTTACAGGCGTAGAG 833
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 787 GGTGGTGGATTGCTAAGTTTCTTAAGGCTACAGTTAGGGTTCGAAGTTACAGGCGTAGAG 846
Query 834 ATAGATCCTGAAGTCTTGAGGATTGCGAGACAATACTTCGGGTTGGAGGAAAGCTTAGCT 893
|||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 847 ATAGATCCTGAAGTCTTGAGGATTGCAAGGCAATACTTCGGGTTAGAGGAAAGCTTAGCT 906
Query 894 CGTGTTCACGTTGAAGATGGTATTGAGTTCTTAAAGAGACTCTCTACTAGCTGTGATGAT 953
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 907 CGTGTTCACGTTGAAGATGGTATTGAGTTCTTAAAGAGACTTTCTAAAAGCTGTGATGAT 966
Query 954 GATGCCA-AGTTTGATGTCTTGATGGTTGATCTCGACTCTACTGATCCGATTCACGGCAT 1012
||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 967 GATGCCAGA-TTTGATGTCTTGATGGTTGATCTGGACTCTACTGATCCAATTCACGGCAT 1025
Query 1013 GACTGCTCCTCCTGTTGAGTTTGTGGCTAAAGATGT-TCTGCAAGCTGCAAGAAAAGTTC 1071
|||||||||||| ||||||||||||||||||||||| | ||| ||||||||||| ||||
Sbjct 1026 GACTGCTCCTCCGGTTGAGTTTGTGGCTAAAGATGTGT-TGCTAGCTGCAAGAACTGTTC 1084
Query 1072 TTGTTCCTTCTGGGGTTTTCATCATCAATGTCATTCCTCCAAACAAGACATTCTACCATG 1131
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct 1085 TTGTTCCTTCTGGGGTTTTCATTATCAATGTCATTCCTCCGAACAAGACATTTTACCAAG 1144
Query 1132 AACTTCAAGACCAATTTAGACATGTCTTTGATGAGTTGCATGAGATCGATGTAGGAAATG 1191
| ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1145 AGCTTCAAGACCAGTTTAGACATGTCTTTGCCGAGTTGTATGAGATCGATGTAGGAAATG 1204
Query 1192 GTGAGAACTTTGTTCTCATTGCGACAGTTACTCCTAGAGATAGCAAGAGCAGTTTCAACA 1251
||||||| ||||||||||| || || ||| | |||||| | || | | | |||||||||
Sbjct 1205 GTGAGAATTTTGTTCTCATCGCAACCGTTGCACCTAGA-A-AG-A-GCG--GTTTCAACA 1258
Query 1252 GAGAGAATCTAACACCCGCTGTCTCGGAAAAATATCTTGATGCTATACAGAAAATCTGAA 1311
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1259 GAGAGAATCTAACACCCGCTGTCTCGGGAAAGTATCTTGATGCTATACAGAAAATCTGAA 1318
Query 1312 TCATTGA 1318
|||||||
Sbjct 1319 TCATTGA 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64859104140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5