BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487244
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04620.2 | Symbols: ATBIOF, BIOF | biotin F | chr5:1327213-1... 2534 0.0
> AT5G04620.2 | Symbols: ATBIOF, BIOF | biotin F | chr5:1327213-1330091
FORWARD LENGTH=1667
Length=1667
Score = 2534 bits (1372), Expect = 0.0
Identities = 1483/1537 (96%), Gaps = 5/1537 (0%)
Strand=Plus/Plus
Query 1 CACTTACAATGGCGGATCATTCGTGGGATAAATGTGTGGAAGAAGCAGTGAATGTGCTTG 60
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 72 CACTTAGAATGGCGGATCATTCGTGGGATAAAACTGTGGAAGAAGCAGTGAATGTGCTTG 131
Query 61 AATCCAGGCAAATTCTTCGATCTTTGAGACCCATTTGTATGTCTAGGCGAAACGAAGAAG 120
|||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 132 AATCCAGGCAAATTCTTCGATCTTTGAGGCCCATTTGCATGTCTAGGCAAAACGAAGAAG 191
Query 121 AAATAGTGAAAATCATAGGCAATGGTGGAGACGAGTACGAGGTGTTCGACGGTTTGTGTC 180
|||||||||||| || || |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 192 AAATAGTGAAAAGCAGAGCCAATGGAGGAGACGGGTACGAGGTGTTCGACGGTTTGTGTC 251
Query 181 AATGGGATCGGACTTCCGTTGAGGTTTCTGTCTCGATTCCTACATTTCAGAAATGGCTTC 240
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 252 AATGGGATCGGACTTCAGTTGAGGTGTCTGTCTCGATTCCTACATTTCAGAAATGGCTTC 311
Query 241 ACGATGAACCCAGCAACGGAGAAGAGATTTTTAGTGGAGATGCAATAGCTGAGAGTAGAA 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 312 ACGATGAACCCAGCAACGGAGAAGAGATTTTTAGTGGAGATGCATTAGCTGAGTGTAGAA 371
Query 301 AAGGGAGATTCAAGAAGCTGCTTTTGTTCTCTGGGAATGATTATTTGGGTTTGAGCTCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AAGGGAGATTCAAGAAGCTGCTTTTGTTCTCTGGGAATGATTATTTGGGTTTGAGCTCAC 431
Query 361 ATCCTACAATATCAAATGCTGCTGCAAACGCAGCCAAAGAATATGGTATGGGACCTAAGG 420
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 432 ATCCTACAATATCAAACGCTGCTGCAAACGCAGTCAAAGAATATGGTATGGGACCTAAGG 491
Query 421 GTTCTGCGTTAATATGTGGCTATACCACTTATCATCGTTTGCTTGAGTCTAGTTTGGCCG 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 492 GTTCTGCTTTAATATGTGGCTATACCACTTATCATCGTTTGCTTGAGTCTAGTTTGG-CG 550
Query 481 -AACTGAAGAAAAAAGAGGATTGTCTTGTTTGTCCTACTGGGTTTGCTGCCAATATGGCT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CAACTGAAGAAAAAAGAGGATTGTCTTGTTTGTCCTACTGGGTTTGCTGCCAATATGGCT 610
Query 540 GCAATGGTTGCAATTGGAAGTGTTGCTTCTCTTTTGGCTGCTAGCGGGAAACCTCTGAAG 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 611 GCAATGGTTGCAATTGGAAGTGTTGCTTCTCTTTTGGCCGCTAGCGGGAAACCTCTGAAG 670
Query 600 AATGAAAAAGTGGCCATTTTTTCTGATGCACTGAATCATGCATCAATTATTGATGGTGTC 659
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 671 AATGAAAAAGTTGCCATCTTTTCTGATGCGCTGAATCATGCATCAATTATTGATGGTGTC 730
Query 660 CGTCTTGCTGAACGACAAGGAAATGTTGAAGTTTTTGTTTATCGACACTGTGACATGTAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CGTCTTGCTGAACGACAAGGAAATGTTGAAGTTTTTGTTTATCGACACTGTGACATGTAT 790
Query 720 CATCTTAATTCGTTACTATCAAGTTGCAAAATGAAGAGGAAGGTCGTGGTGACTGATAGC 779
|| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 791 CACCTTAATTCGTTATTATCAAATTGCAAAATGAAGAGGAAGGTCGTGGTGACTGATAGC 850
Query 780 TTATTTAGTATGGACGGTGACTTTGCACCAATGGAAGAGCTCTCTCAGCTTCGGAAGAAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTATTTAGTATGGACGGTGACTTTGCACCAATGGAAGAGCTCTCTCAGCTTCGGAAGAAG 910
Query 840 TATGGCTTCCTACTAATTATTGATGATGCTCATGGAACATTTGTTTGTGGAG-AAACTGG 898
||||||||||| ||| |||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 911 TATGGCTTCCTTCTAGTTATTGATGATGCTCATGGAACATTTGTCTGTGGAGAAAAC-GG 969
Query 899 TGGTGGTGTGGCCGAGGAATTTAACTGCGAAGCCGACGTAGATTTATGTGTGGGCACTTT 958
|||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 970 TGGTGGCGTGGCTGAGGAATTTAACTGTGAAGCTGATGTAGATTTATGTGTGGGCACTTT 1029
Query 959 GAGTAAGGCAGCAGGGTGTCATGGCGGATTCATAGCTTGCAGCAAAAAATGGAAGCAACT 1018
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1030 GAGTAAGGCAGCAGGGTGTCATGGCGGTTTCATAGCTTGCAGCAAAAAATGGAAGCAACT 1089
Query 1019 GATACAGTCGAGAGGTCGTTCATTCATATTTTCAACAGCAATCCCTGTCCCAATGGCTGC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GATACAGTCGAGAGGTCGTTCATTCATATTTTCAACAGCAATCCCTGTCCCAATGGCTGC 1149
Query 1079 AGCTGCTTACGCAGCAGTTGTAGTGGCGAGGAAGGAGAGATGGAGAAGAAAGGCAATATG 1138
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1150 AGCTGCTTATGCAGCAGTTGTAGTGGCGAGGAAGGAGATATGGAGAAGAAAGGCAATATG 1209
Query 1139 GGAGAGGGTAAAAGAGTTCAAGGCATTATCTGGAGTTGACATCTCAAGCCCCATTATCTC 1198
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1210 GGAGAGGGTAAAAGAGTTCAAGGAATTATCTGGAGTTGACATCTCAAGCCCCATTATCTC 1269
Query 1199 ACTTGTTGTAGGCAATCAAGAGAAAGCCCTCAAAGCGAGCCGGTATCTGTTAAAATCAGG 1258
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1270 ACTTGTTGTAGGGAATCAAGAGAAAGCCCTCAAAGCGAGCCGGTATCTATTAAAATCAGG 1329
Query 1259 CTTCCATGTAATGGCAATACGACCACCCACAGTGCCACCCAATTCTTGCAGGCTAAGGGT 1318
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1330 CTTCCATGTAATGGCAATACGACCGCCCACAGTGCCACCCAATTCTTGCAGGCTAAGGGT 1389
Query 1319 GACACTGAGTGCAGCACATACCACAGAAGATGTGAAGAAACTCATCACTGCGCTTTCTTC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GACACTGAGTGCAGCACATACCACAGAAGATGTGAAGAAACTCATCACTGCGCTTTCTTC 1449
Query 1379 TTGTTTGGACTTTGACAACACCGCCACTCACATTCCTTCCTTTCTCTTTCCCAAATTATA 1438
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1450 TTGTTTGGACTTTGACAACACAGCCACTCACATTCCTTCCTTTCTATTTCCCAAATTATA 1509
Query 1439 AAACCT-TTTCTGTTGTCTCAATTATTCCAAAACTCTAATTCTTAAATTGTTTGTGATAT 1497
|||| | ||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1510 AAACTTCTTTCTGTTGTCGCAATTATTCCAAAGCTCTAATTCTAAAATTGTTTCTGATAT 1569
Query 1498 TGTCAGTGAAAGAATCACTTGAACTAGAGAGTTCATT 1534
||||||||||||||||||||||| || ||||||||||
Sbjct 1570 TGTCAGTGAAAGAATCACTTGAAGTACAGAGTTCATT 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5