BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487246
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04640.1 | Symbols: AGL99 | AGAMOUS-like 99 | chr5:1332825-1... 372 4e-102
> AT5G04640.1 | Symbols: AGL99 | AGAMOUS-like 99 | chr5:1332825-1333793
FORWARD LENGTH=969
Length=969
Score = 372 bits (201), Expect = 4e-102
Identities = 291/331 (88%), Gaps = 20/331 (6%)
Strand=Plus/Plus
Query 550 GTTCTCATAAATTTGGATGAGGACAATATCCACTTGTCTGATTTGGACGAC---GAT--- 603
|||| || |||| |||||||||||||||||||| |||||||| |||||||| |||
Sbjct 637 GTTCACAAAAATATGGATGAGGACAATATCCACGTGTCTGATATGGACGACAAGGATACG 696
Query 604 ATGCTAATGATTTCTGACAACAACAATGTTTTACCTGAAAACTT-GAGTGAATTCGATCA 662
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 697 ATGCTAATGATTTCTGACAAGAACAATGTTTTACCTGAAAACTTGGA-TGAATTCGATCA 755
Query 663 AGAGCTAGATCTTGATCAGCTCA-TTGATTTTGAGACGAATTGTGAAAGTCTTTTGAAGA 721
||||||||||||||||||||| | ||||||||||||| || | |||||| ||||||||||
Sbjct 756 AGAGCTAGATCTTGATCAGCT-ACTTGATTTTGAGACAAACTATGAAAGCCTTTTGAAGA 814
Query 722 GTTTTGAGAT---GGATTATGCCACGATGGTGACTACAAAGCAAAATTTGAGCTCTAATT 778
||| |||||| |||||||||| ||||||||||||||||||||||| || |||| || |
Sbjct 815 GTTGTGAGATGGAGGATTATGCCTCGATGGTGACTACAAAGCAAAATCTGTGCTC-AAAT 873
Query 779 CC-GAAGCTGTGGAAGATGGAGGATTAATAATGATTCAAAAAGATTTGAATGG-GGATAA 836
|| |||||||| |||||||||||| | ||||||||||||||||||| | || ||||||
Sbjct 874 CCTGAAGCTGTTGAAGATGGAGGA-T--TAATGATTCAAAAAGATTT-ACCGGAGGATAA 929
Query 837 TCTCTGCTTTTCTGATTATTTCAATGAGTTA 867
||||||||||||||||||||||| ||| |||
Sbjct 930 TCTCTGCTTTTCTGATTATTTCAGTGACTTA 960
Score = 329 bits (178), Expect = 2e-89
Identities = 286/335 (85%), Gaps = 19/335 (6%)
Strand=Plus/Plus
Query 5 TAGCCACTCCGGTTTCTTCCAACTCCAACGTTTCTTTCTACACCTTTGGCCATTCCTCTG 64
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 143 TAGCCACTCCGGTCTCTTCCAAATCAAACGTTTCTTTCTACACCTTTGGCCATTCCTCTG 202
Query 65 TCGATAACGTTGTTGCTGCTTTCCTCGCGAATCAGCAGCGTCCTCGGGAGGGTCTAGGGT 124
| ||||||||||| || ||||||||| ||||||||| | ||||||||| ||||||||||
Sbjct 203 TTGATAACGTTGTAGCCGCTTTCCTCACGAATCAGC-G--TCCTCGGGAAGGTCTAGGGT 259
Query 125 TAGGGTTTTGGTGGGAAGATGAGAAGCTTGCAAAATCAGAGGATCC-GGAGGAACTGAGA 183
||| | ||||||||||||||||| |||| ||||||||||||| || |||||||||||||
Sbjct 260 TAGACTATTGGTGGGAAGATGAGAGGCTTTCAAAATCAGAGGA-CCTGGAGGAACTGAGA 318
Query 184 GACGCGATGGACTCAATGTCAAAGATGTTGAAAGATCTGAAGGAGTTGC-GTTTCAATGC 242
||||| |||||||| ||||| ||||||||||||||||||||||| |||| | |||| |
Sbjct 319 GACGCAATGGACTCGATGTCGAAGATGTTGAAAGATCTGAAGGATTTGCAGAATCAA--C 376
Query 243 CTTGGAAAATAGACGAGATTGTGTGGACGTGAAGAAGAAGGGTGTTTTACACGCAACTCA 302
| | | | | ||| | | | ||||||||||||||||||||||||||| ||||||
Sbjct 377 ---G-AGATT-GT-GAG---GAG-G-ACGTGAAGAAGAAGGGTGTTTTACACGGAACTCA 425
Query 303 TCAAGAGCAAACCCTTAGTCCTCAATCGTTTTCTG 337
|||| |||||||| ||| |||| |||| | |||||
Sbjct 426 TCAAAAGCAAACCTTTAATCCTGAATCATGTTCTG 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5