BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487250
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04710.1 | Symbols: | Zn-dependent exopeptidases superfamil... 2844 0.0
> AT5G04710.1 | Symbols: | Zn-dependent exopeptidases superfamily
protein | chr5:1356990-1360247 REVERSE LENGTH=1983
Length=1983
Score = 2844 bits (1540), Expect = 0.0
Identities = 1771/1877 (94%), Gaps = 37/1877 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGCCATAGCTCGTCTTCCACTAACTCATTCTCTTCCCTCCAAATTCAATCCTTCA 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 ATGGCGGCCATAGCTCGTCTTCCACTAACTCATTCTCTTCCCTCCATCTTCAATCCTTCA 179
Query 61 TTATTCCTCTCTCAATCTATTTCTTTTCCTACTTAtctccatcgctctccctttcgctcc 120
| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCTTCCTCTCTCAGTCTCTCTCTTTTCCTACTTATCTCCATCGCTCTCCCTTTCGCTCC 239
Query 121 ttct-ctccaatcctctgc--tcctc--ctcctctc-tGGGTGATTCGAGATCGCTGGGG 174
|||| |||| | |||| | ||||| | |||| | | | ||||||||||||| ||||
Sbjct 240 TTCTCCTCC-GT-CTCTCCAATCCTCTGCACCTCCCAT-CGCGATTCGAGATCGCCGGGG 296
Query 175 AGTGATTCTAATGCGTCGATTGTCGGGGATCTTCTGGATTATCTTAATGAATCCTGGACA 234
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 297 AGTGATTCTAATGCGTCGATTGTTGGGGATCTTCTGGATTATCTTAATGAATCCTGGACA 356
Query 235 CAGTTTCACGCCACTGCTGAGGCGAAGAGACAGCTTTTGGCTGCTGGGTTTGATCTCCTC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAGTTTCACGCCACTGCTGAGGCGAAGAGACAGCTTTTGGCTGCTGGGTTTGATCTCCTC 416
Query 295 AGTGAAAACGAGGACTGGAAGCTGAAACCTGGTGGCCGTTACTTCTTTACACGAAACATG 354
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGTGAAAACGAAGACTGGAATCTGAAACCTGGTGGCCGTTACTTCTTTACACGAAACATG 476
Query 355 TCCTGTTTGGTTGCTTTTGCTGTCGGCGAAAAGTATGTTCCTGGTAATGGTTTTCATGCC 414
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 477 TCCTGTTTGGTTGCTTTTGCTGTCGGAGAAAAGTATGTGCCTGGTAATGGTTTTCATGCC 536
Query 415 ATAGCTGCTCACACCGATAGCCCGTGTCTTAAACTTAAGCCCAAGTCTGCTTCATCTAAG 474
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 537 ATAGCTGCTCACACCGATAGCCCGTGTCTTAAACTTAAACCGAAGTCTGCTTCATCCAAG 596
Query 475 TCTGGCTATCTCATGGTGAATGTTCAGACTTATGGAGGTGGTTTGTGGCACACATGGTTT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCTGGCTATCTCATGGTGAATGTTCAGACTTATGGAGGTGGTTTGTGGCACACATGGTTT 656
Query 535 GATCGAGACTTGAGTGTTGCGGGGCGAGCAATTGTGAGAGCCAGTGATGGCTCGTTTGTT 594
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATCGAGACTTAAGTGTTGCGGGGCGAGCAATTGTGAGAGCCAGTGATGGCTCGTTTGTT 716
Query 595 CACAAGCTCGTCAAAGTGAAGAGGCCATTACTAAGAGTACCCACTTTGGCCATTCATCTT 654
|| | ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 717 CATAGGCTTGTCAAAGTGAAAAGGCCATTACTAAGGGTACCCACTTTGGCCATTCATCTT 776
Query 655 GATCGCACAGTGAACAGTGATGGATTTAAACCGAATTTGGAGACCCAACTTGTTCCGCTA 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 GATCGCACAGTGAACAGTGATGGATTTAAACCAAATTTGGAGACCCAACTTGTTCCGCTA 836
Query 715 CTGGCAACGAAATCAGATGAATCCTCAGCAGAGTCCAAGGACAAAAATGTATCCTCCAAA 774
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTGGCAACAAAATCAGATGAATCCTCAGCAGAGTCCAAGGACAAAAATGTATCCTCCAAA 896
Query 775 GATGCCCATCATCCATTACTCATGCAGATTTTGTCAGATGACCTGGACTGTAAGGTCGAG 834
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GATGCTCATCATCCATTACTCATGCAGATTTTGTCAGATGACCTGGACTGTAAGGTCGAG 956
Query 835 GATATAGTGAGTCTTGAGTTAAATATCTGTGACACCCAACCTAGCTGCCTAGGAGGAGCA 894
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 GATATAGTGAGTCTTGAGTTAAATATCTGTGACACCCAACCTAGCTGCCTTGGAGGAGCA 1016
Query 895 AACAATGAATTCATATTCTCTGGAAGACTAGATAATCTTGCATCAAGTTTCTGTGCTTTG 954
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1017 AATAATGAATTCATATTCTCTGGAAGACTTGATAATCTTGCATCAAGTTTCTGTGCTTTG 1076
Query 955 AGAGCTCTCATTGATTCATGTGAATCATCGGAAAGCCTGTCGACTGAACATGATATCCGG 1014
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1077 AGAGCTCTCATTGATTCATGTGAATCATCAGAAAATCTGTCGACTGAACATGATATCCGG 1136
Query 1015 ATGATAGCTTTATTTGACAACGAGGAGGTTGGTTCAGATTCATGTCAAGGTGCAGGGGCG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1137 ATGATAGCTTTATTTGACAACGAGGAGGTTGGTTCAGATTCATGTCAAGGTGCTGGGGCG 1196
Query 1075 CCCACTATGTTTCAAGCAATGAGACGGATTGTAAGTTCCCTAGGCAATAAGCAGGTCACT 1134
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1197 CCCACTATGTTTCAAGCAATGAGACGGATTGTGAGTTCCCTAGGAAATAAGCAGGTCACT 1256
Query 1135 GAATGTACATTTGACCGTGCTATCCGGAAATCTTTTCTTGTGTCTGCAGACATGGCTCAT 1194
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 GAGTGTACATTTGACCGTGCTATCCGGAAATCGTTTCTTGTGTCTGCAGACATGGCTCAT 1316
Query 1195 GGAGTGCACCCCAACTTTGCAGACAAGCATGAAGAGAACCACCGTCCTCAACTACGCAAG 1254
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1317 GGAGTCCACCCCAACTTTGCAGACAAGCATGAAGAGAACCACCGTCCCCAACTACACAAG 1376
Query 1255 GGTCTGGTTATCAAACATAACGCAAACCAACGCTATGCAACCAGTGGAATCACTTCTTTT 1314
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1377 GGTCTTGTAATCAAACATAACGCAAATCAACGCTATGCAACCAGTGGAATCACTTCTTTT 1436
Query 1315 CTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGGAGTTTGTGGTGAGAAAT 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTTTTCAAAGAAGTAGCAAAGCTCCATGATCTTCCAATTCAGGAGTTTGTGGTGAGAAAC 1496
Query 1375 GATATGGGATGTGGCTCAACAATAGGACCTATATTGGCTTCAGGAGTGGGGATCCGAACT 1434
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1497 GATATGGGATGTGGTTCAACAATAGGACCTATATTGGCTTCAGGAGTAGGGATCCGAACC 1556
Query 1435 GTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGTGTGAGAGAGATTTGTGGAACAGAC 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GTTGATTGTGGCATAGCTCAGCTTTCTATGCATAGTGTGAGAGAGATTTGTGGAACAGAC 1616
Query 1495 GATATAGACATCGCGTACAGACATTTCAAGGCGTTTTATCGATCTTTCTCAAGCGTAGAC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GATATAGACATCGCGTACAGACATTTCAAGGCGTTTTATCGATCTTTCTCAAGCGTAGAC 1676
Query 1555 AAGAAGCTCGTTGTGGATGATTAACTCCCCTGGATATTAATCTCGAG-CT-CAAAGATCT 1612
|||||||||||||||||||||||||||||| ||||||| |||| || | |||||||||
Sbjct 1677 AAGAAGCTCGTTGTGGATGATTAACTCCCC-GGATATTC-TCTCTAGGCAACAAAGATCT 1734
Query 1613 TAAGACATGGTGAGAA-TGTTCAGCTAGTTACTTCTGTTCGTGGCTGGTCCTCAGTCTCA 1671
|||||||||||||||| |||| |||||||| ||||||||||||| |||||||||||||||
Sbjct 1735 TAAGACATGGTGAGAAATGTTAAGCTAGTTGCTTCTGTTCGTGGATGGTCCTCAGTCTCA 1794
Query 1672 CAACAAGAACAGAACCTAAAATTTGATTCTCTTGTTTAGGAAA--AT----------T-G 1718
||||||||||||||||||||||| |||| |||||||||||||| || | |
Sbjct 1795 CAACAAGAACAGAACCTAAAATT-GATTTTCTTGTTTAGGAAATTATAGAAACCAAATTG 1853
Query 1719 GAATATAATCTTCAAGGTTAAGGTTCCGGTTTGTAATACCGCCTATTGTTAT-C-TTGAC 1776
|||| |||||||| |||||||||||||||||||||| || || ||||||| | | |||||
Sbjct 1854 GAATGTAATCTTCTAGGTTAAGGTTCCGGTTTGTAACACTGCATATTGTTTTACCTTGAC 1913
Query 1777 AAATAAGATTCtttttaatttgtcgaatttttatattttttcatatacagaagaaccttt 1836
||||||| |||||| ||||||||||||| ||||||||||| || |||||||||||
Sbjct 1914 AAATAAGCTTCTTTCTAATTTGTCGAATATTTATATTTTT-CA------GAAGAACCTTT 1966
Query 1837 aattttatttCCAACAG 1853
|||||| ||||||||||
Sbjct 1967 AATTTTCTTTCCAACAG 1983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5