BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487252
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04740.1 | Symbols: | ACT domain-containing protein | chr5:... 1845 0.0
> AT5G04740.1 | Symbols: | ACT domain-containing protein | chr5:1368542-1371480
REVERSE LENGTH=1166
Length=1166
Score = 1845 bits (999), Expect = 0.0
Identities = 1106/1156 (96%), Gaps = 13/1156 (1%)
Strand=Plus/Plus
Query 1 GCCATTTTATAGA-TATCGGTGTTCTCTCTGACTTCGAAGGAGAAAGAAAGAAGaaaaaa 59
||||||||||||| || ||||||||||||||||||| ||||||||||||| | ||||||
Sbjct 12 GCCATTTTATAGATTA-AGGTGTTCTCTCTGACTTCGGAGGAGAAAGAAAG-A-AAAAAA 68
Query 60 aTAATCTTGTTTCAAACTTCGATGGCGTTCTCGAGTTCTATCTTCTCTGTTACTCAGTTT 119
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 69 ATATTCTTGTTTCAAACTTCAATGGCGTTCTCGAGTTCCATCTTCTCTGTTACTCAGTTT 128
Query 120 TCTTCTTCGATTA-CCTCGCGACCTTCTTCTGCGATCAGTAGGCAGACTCGTTTTCCCGC 178
||||||||| ||| | ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 129 TCTTCTTCG-TTAGCTTCGCGTCCTTCTTCTGCAATCAGTAGGCAGACTCGTTTTCCCGC 187
Query 179 TCAAATTACTTCTCCAGATCTATCGCCTGCTTTGTTCGATGATCGCCGTAAGTTCTTCGG 238
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 188 TCAAATTGCTTCTCCAGATCTATCGCCTGCTTTGTTCGATGATCGCCGGAAGTTCGTCGG 247
Query 239 AGGTGTAATGTCTCTCTTGACGAAGAGTATAAAAAACCGTGTATATGCTTCGATTAACAG 298
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 248 AGGTGTAATGTCTCTCTTGACGAAGAGTATTAAAAACCGTGTATATGCTTCGATTAACAG 307
Query 299 CATTGATTCGGCCGCTACTCCATCTTATCCGAAATCGGAAGACGATGACGATGTTGTTCC 358
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 308 CATTGATTCGGCCGCTACTCCATCGTATCCGAAATCGGAAGACGATGACGACGTTGTTCC 367
Query 359 AATGCCAATGGTTATGATAGACCAGGATGCTGACCCTGAAGCTACTATTGTACAACTCAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AATGCCAATGGTTATGATAGACCAGGATGCTGACCCTGAAGCTACTATTGTACAACTCAG 427
Query 419 TTTTGGAAATCGTCTTGGGGCTCTCATTGACACAATGAGGGCGCTGAAAGATTTGGGATT 478
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 428 TTTTGGAAATCGTCTTGGGGCTCTTATTGACACAATGCGGGCGCTGAAAGATTTGGGATT 487
Query 479 GGATGTAATAAAAGGAACTGTCTCAACTGAAGGAGATATTAAGCAGACCAAATTTTCTAT 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 488 GGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTAT 547
Query 539 AACAAAACGAGACACTGGTCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGTTT 598
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 548 AACGAAACGAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATT 607
Query 599 AACAATCATCAACAATCTCTTGAAATACCATCCGGAATGCAGTGAGCAACTTGCAATGGG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 AACAATCATCAACAATCTCTTGAAATACCATCCGGAATGCAGTGAGCAACTTGCAATGGG 667
Query 659 TGAGACTTTTGGAATAAAGGCTCCAGAAAAGAAGATTGATGTCGATATCGCAACTCATAT 718
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 668 TGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGATTGATGTCGATATCGCAACTCATAT 727
Query 719 AAATGTGAAAGAAGATGGACCAAAGAGGAGCCTGCTTGTCATAGAGACAGCGGACAGGCC 778
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ACATGTGAAAGAAGATGGACCAAAGAGGAGCCTGCTTGTCATAGAGACAGCGGACAGGCC 787
Query 779 AGGTCTTGTCGTAGAGATGATCAAAGTGATGGCTGATATCAACGTAGACGTGGAGTCTGC 838
||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 788 AGGTCTTGTCGTAGAGATGATCAAAGTGATGGCTGATGTCAACATAGACGTGGAATCCGC 847
Query 839 AGAGATAGACACAGAGGGACTGGTTGCGAAAGATAAGTTTCACGTAAGCTACCAAGGGCA 898
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 848 AGAGATAGATACAGAGGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCA 907
Query 899 AGCACTAAACAGATCTTTGTCACAGGTTTTGGTGAACTGTCTGCGTTACTTCCTGAGAAG 958
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGCTCTAAACAGATCTTTGTCACAGGTTTTGGTGAACTGTCTGCGTTACTTCCTGAGAAG 967
Query 959 GCCTGAAACTGACATTGACAGCTACTAAATGAGCTTTTGTTTGCTCTAAAACAAAACTGG 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GCCTGAAACTGACATTGACAGCTACTAAATGAGCTTTTGTTTGCTCTAAAACAAAACTGC 1027
Query 1019 TTTTTATCCTTTAAAGCAAAATCATGTATCTGTGCTA-CGAAACTTTCAAGTCTTCTGTT 1077
| ||||||||||||||||| |||| ||||||||| ||||||||||| | |||||||
Sbjct 1028 TCTTTATCCTTTAAAGCAA--TCAT--ATCTGTGCTTGCGAAACTTTCA-GACTTCTGTA 1082
Query 1078 TAGAAGATTATGTGGGAAATTCGTGATACTATAATTGAACCACTGTGGCTAAAAAATAAA 1137
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TGGAAGATTATGTGG-AAATTCGTGATACTATAATTGAACCACTGTGGCTAAAAAATAAA 1141
Query 1138 TGGGTTCTTGACACTT 1153
||||||||||||||||
Sbjct 1142 TGGGTTCTTGACACTT 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5