BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487263
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04390.1 | Symbols: | Ribosomal S17 family protein | chr2:1... 806 0.0
AT2G05220.1 | Symbols: | Ribosomal S17 family protein | chr2:1... 706 0.0
AT5G04800.1 | Symbols: | Ribosomal S17 family protein | chr5:1... 680 0.0
> AT2G04390.1 | Symbols: | Ribosomal S17 family protein | chr2:1527016-1528493
FORWARD LENGTH=684
Length=684
Score = 806 bits (436), Expect = 0.0
Identities = 494/519 (95%), Gaps = 15/519 (3%)
Strand=Plus/Plus
Query 1 GTAACTGAAAGATGGGGCGTGTAAGAACCAAGACCGTGAAGAAATCTTCTCGTCAAGTCA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 91 GTAACTGAAAGATGGGGCGTGTTAGAACCAAGACCGTGAAGAAATCTTCTCGTCAAGTCA 150
Query 61 TTGAGAAGTACTACTCTCGCATGACTCTTGACTTTCACACTAACAAGAAGATCCTTGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 TTGAGAAGTACTACTCTCGCATGACTCTTGACTTTCACACTAACAAGAAGATCCTTGAAG 210
Query 121 AGGTTGCCATCATCCCTTCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACT 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 AGGTTGCCATCATCCCATCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACT 270
Query 181 TGATGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAAGAAGAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TGATGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAAGAAGAAG 330
Query 241 AGCGTGAACGCCGCATGGACTTTGTTCCCGATGAGTCTGCTATCAGGACCGATGAGATCA 300
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 331 AGCGTGAACGCCGTATGGACTTTGTTCCCGATGAGTCTGCTATCAAGACTGATGAGATCA 390
Query 301 AGGTCGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACTCCCGGCA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 391 AGGTCGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACTCTCGGCA 450
Query 361 TCTCTGCAGTCGAGCCACAA-A--CTATGGCACCAATCCCTGCTTTCGGCAG----AG-- 411
||||||||||||| |||||| | |||||||||||||||||||||||||| | ||
Sbjct 451 TCTCTGCAGTCGACCCACAACAAGCTATGGCACCAATCCCTGCTTTCGGCGGCGGCAGGG 510
Query 412 CACCCAGAAGATACTAAGATGGACGATTGGCTCTCTTTTTTCACAGTTAGGGACAACAAA 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 511 CACCCAGAAGATACTAAGATGGACGATTGGCTCTCTTTTTTCACAGTTAGGGACAAGAAA 570
Query 472 GACTTGTGGTTCTTGGAATGTTTATTGTTTCTTTTGATT 510
|||||||| | || |||||||||||||||||||||
Sbjct 571 GACTTGTG-T----GGT-TGTTTATTGTTTCTTTTGATT 603
> AT2G05220.1 | Symbols: | Ribosomal S17 family protein | chr2:1894574-1896036
REVERSE LENGTH=720
Length=720
Score = 706 bits (382), Expect = 0.0
Identities = 420/437 (96%), Gaps = 8/437 (2%)
Strand=Plus/Plus
Query 4 ACTGAAAGATGGGGCGTGTAAGAACCAAGACCGTGAAGAAATCTTCTCGTCAAGTCATTG 63
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 107 ACTGAAAGATGGGGCGTGTTAGAACCAAGACGGTGAAGAAATCTTCACGTCAAGTCATTG 166
Query 64 AGAAGTACTACTCTCGCATGACTCTTGACTTTCACACTAACAAGAAGATCCTTGAAGAGG 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 AGAAGTACTACTCTCGCATGACTCTTGACTTTCACACTAACAAGAAGATCCTTGAAGAGG 226
Query 124 TTGCCATCATCCCTTCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACTTGA 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTGCCATCATCCCATCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACTTGA 286
Query 184 TGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAAGAAGAAGAGC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAAGAAGAAGAGC 346
Query 244 GTGAACGCCGCATGGACTTTGTTCCCGATGAGTCTGCTATCAGGACCGATGAGATCAAGG 303
|||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 347 GTGAACGCCGTATGGACTTTGTTCCCGATGAGTCTGCTATCAAGACTGATGAGATCAAGG 406
Query 304 TCGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACAC-TCCCGGCATC 362
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 407 TCGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACATCC-GGCATC 465
Query 363 TCTGCAGTCGAGCCACAA-A--CTATGGCACCAATCCCTGCTTTCGGCAG-AG--CACCC 416
|||||||||||||||||| | |||||||||||||| ||||||||||| | || |||||
Sbjct 466 TCTGCAGTCGAGCCACAACAAGCTATGGCACCAATCGCTGCTTTCGGCGGCAGGGCACCC 525
Query 417 AGAAGATACTAAGATGG 433
|||||||||||||||||
Sbjct 526 AGAAGATACTAAGATGG 542
> AT5G04800.1 | Symbols: | Ribosomal S17 family protein | chr5:1388484-1389848
FORWARD LENGTH=749
Length=749
Score = 680 bits (368), Expect = 0.0
Identities = 419/442 (95%), Gaps = 9/442 (2%)
Strand=Plus/Plus
Query 1 GTAACTGAAAGATGGGGCGTGTAAGAACCAAGACCGTGAAGAAATCTTCTCGTCAAGTCA 60
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 107 GTAACTGAAAGATGGGGCGTGTTAGAACCAAGACTGTGAAGAAATCTTCTCGTCAAGTCA 166
Query 61 TTGAGAAGTACTACTCTCGCATGACTCTTGACTTTCACACTAACAAGAAGATCCTTGAAG 120
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 167 TCGAGAAGTACTACTCTCGCATGACTCTTGACTTCCACACTAACAAGAAAATCCTTGAAG 226
Query 121 AGGTTGCCATCATCCCTTCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AGGTTGCCATCATCCCTTCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACT 286
Query 181 TGATGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAAGAAGAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 287 TGATGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAGGAAGAGG 346
Query 241 AGCGTGAACGCCGCATGGACTTTGTTCCCGATGAGTCTGCTATCAGGACCGATGAGATCA 300
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 347 AGCGTGAACGCCGCATGGACTTTGTTCCCGATGAGTCTGCCATCAAGACTGATGAGATCA 406
Query 301 AGGTCGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACTCCCGGCA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGGTGGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACTCCCGGCA 466
Query 361 TCTCTGCAGTCGAGCCACAA-A--CTATGGCACCAATCCCTGCTTTCGG------CAGAG 411
|||||||||||||||||||| | |||||||||||||| |||||||||| ||| |
Sbjct 467 TCTCTGCAGTCGAGCCACAACAAGCTATGGCACCAATCGCTGCTTTCGGTGGTGGCAGGG 526
Query 412 CACCCAGAAGATACTAAGATGG 433
||||||||||||||| ||||||
Sbjct 527 CACCCAGAAGATACTGAGATGG 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5