BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487264
Length=2884
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 4453 0.0
> AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390034-1393930 FORWARD LENGTH=3044
Length=3044
Score = 4453 bits (2411), Expect = 0.0
Identities = 2689/2824 (95%), Gaps = 15/2824 (1%)
Strand=Plus/Plus
Query 1 ATGGATAATGGAGGGAGCGTGTTGTCCCTCTCTGCTCCACACTTTCCTTACTCCGCCACC 60
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 16 ATGGATAATGGAGGGAGCGTGTTGTCGCTCTCTGCTCCACACTTCCCTTACTCCGCCACC 75
Query 61 ATTCTCCGCCGTTACTCTCCGGTGGCTTCCATATCGTTCTCCCTCAAACCACCGCCGCAA 120
|||||||| ||| |||||||||||||||||||||| |||||||| || || | | |
Sbjct 76 ATTCTCCGACGTCACTCTCCGGTGGCTTCCATATCTTTCTCCCT-TAAGCA---AC-C-A 129
Query 121 CCACCACAACCTCCGCCTGAACCTCCTGAGAGTCCTCCTGACCTCCGTCGCCCGGAGAAA 180
||||| ||| || || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 130 CCACCGCAA---CCACCAGAACCTCCTGAGAGTCCTCCTGACCTCCGCCGCCCGGAGAAA 186
Query 181 tctcttggtttttcttcttcttcttcctctccttcccctatcccttctcctaaaacccct 240
||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCTATTGGTTCTTCTTCATCTTCTTCCTCTCCTTCCCCTATCCCTTCTCCTAAAACCCCT 246
Query 241 cttAAGATTAATCCACTCAAGGATTTAACGAATCGTTCTTCTGTGTCTCCTCTTGTTCAA 300
|||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct 247 CTTAAGATTAATCCACTCAAGGGTTTAACCAATCGCTCTTCTGTGTCTCCTCTTGTTCAA 306
Query 301 TCAGAGGTTTCGAGTAAAGTTTCTTCCTTTGGCTCTTCTCTCGCATCCAAACTACGTTTG 360
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 307 TCAGAGGTTTCGAGTAAAGTTTCTTCCTTTGGCTCCTCTCTAGCATCCAAGCTACGTTTG 366
Query 361 TCCAGCAAG--CTAT-CTCCGCCTCCTCCTCCACCTCCGCCTCCTGTTGAGG-AA--ACC 414
||||||||| || | |||| ||||||||||||||||||||||||||||||| || |||
Sbjct 367 TCCAGCAAGCTCTCTCCTCCTCCTCCTCCTCCACCTCCGCCTCCTGTTGAGGAAACCACC 426
Query 415 CAATTCCGAGATGACCTGCGTAATGACACGAAACCTCCGGAAGAAGAAACTCGGAAGCCG 474
|||||||||||||| | || | |||||||||||| ||||||||||||||||| || |||
Sbjct 427 CAATTCCGAGATGAGTTTCGGAGTGACACGAAACCACCGGAAGAAGAAACTCGAAACCCG 486
Query 475 CAACAGGACTTCCGACAAGAAGGGAAGATATTCGTCGGTAATTTACCGACATGGATAAAG 534
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 487 CAACAGGAATTCCGACAAGAAGGGAAGATATTCGTTGGTAATTTACCGACATGGATAAAG 546
Query 535 AAACCAGAGTTTGAGGAGTTTTTCCGACAGTTCGGACCGATAGAGAATGTGATTCTAATC 594
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 547 AAACCAGAGTTTGAAGAGTTCTTCCGACAGTTCGGACCGATAGAGAATGTGATTCTAATC 606
Query 595 AAAGGACATCACGAAGTCGAGAAAAACGCGGGATTTGGGTTCATTATTTACGCGGCAGAG 654
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AAAGGACATCACGAGGTCGAGAAAAACGCGGGATTTGGGTTCATTATTTACGCGGCAGAG 666
Query 655 AAGTCTGCAATGAAAGCTGTGGAGTTCGACGGCGTTGAGTTTCACGGCAGGATATTGACG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGTCTGCAATGAAAGCTGTGGAGTTCGACGGCGTTGAGTTTCACGGCAGGATATTGACG 726
Query 715 GTGAAGCTAGACGATGGAAAGAGGCTGAAAACAAAGGCTGAGCAGAGAGTGAGGTGGGTA 774
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 727 GTGAAGCTAGACGACGGAAAGAGGCTGAAAACAAAGGCTGAACAGAGAGTGAGGTGGGTA 786
Query 775 CAGGAGGGAGAAGAAGACGCGAAAATGTCGAATAAGTCAACATGGCATCAGGAGAGAGAA 834
|||| |||||||||||| |||||||||| |||||||| | |||||||| |||||||||
Sbjct 787 GAGGAAGGAGAAGAAGACACGAAAATGTCTAATAAGTCGTCGTGGCATCAAGAGAGAGAA 846
Query 835 GGGTCACGAAAGTCACTTCAGAGGATTCTAGATACTAATGGAGATAACTGGCAAGCTGTT 894
||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 847 GGGTCTCGAAAGTCACTACAGAGGATTTTAGATACCAATGGAGATAACTGGCAAGCTGTT 906
Query 895 ATTTCAGCTTTCGAGAAGATCAACAAGCCTTCTAGGACAGAGTTTGGTTTGATGGTGAAG 954
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 907 ATTTCAGCTTTCGAGAAGATCAGCAAGCCTTCGAGGACAGAGTTTGGTTTGATGGTGAAG 966
Query 955 TTCTATGGAAGAAGAGGAGATATGCATCGTGCACGTGAAACTTTCGAGAGGATGCGTGCG 1014
||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||
Sbjct 967 TTCTATGGAAGAAGAGGGGATATGCATCGTGCACGTGAGACTTTTGAGAGAATGCGCGCG 1026
Query 1015 AGGGGTATCACACCAACATCACGTATATACACAAGCCTTATTCACGCTTATGCAGTTGGT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGGGGTATCACACCAACATCACGTATATACACAAGCCTTATTCACGCTTATGCAGTTGGT 1086
Query 1075 AGAGACATGGATGAAGCACTGTCTTGTGTTCGTAAAATGAAGGAAGAAGGGATTGAGATG 1134
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1087 AGAGACATGGACGAAGCACTGTCTTGTGTTCGTAAAATGAAGGAAGAAGGAATTGAGATG 1146
Query 1135 AGTTTGGTGACTTATAGTGTAATCGTTGGAGGATTCTCCAAAGCGGGAAATGCCGAAGCT 1194
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1147 AGTTTGGTGACTTATAGTGTAATCGTTGGAGGATTCTCTAAAGCGGGACATGCCGAAGCT 1206
Query 1195 GCAGATCACTGGTTTGACGAGGCCAAACGGATACACAAAACCCTTAATGCTAGTATATAT 1254
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1207 GCAGATTACTGGTTTGACGAGGCCAAACGGATACACAAAACCCTTAATGCCAGTATATAT 1266
Query 1255 GGAAAAATCATATACGCACACTGTCAGACGTGCAATATGGAGCGGGCAGAGGCATTGGTG 1314
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GGAAAAATCATATATGCACACTGTCAGACGTGCAATATGGAGCGGGCAGAGGCATTGGTG 1326
Query 1315 AGGGAGATGGAAGAAGAAGGTATTGATGCTCCTATTGCTATCTACCACACCATGATGGAT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 AGGGAGATGGAAGAAGAAGGTATTGATGCTCCTATTGCTATCTACCACACCATGATGGAT 1386
Query 1375 GGCTATACAATGGTCGCCGATGAGAAGAAAGGCTTAGTTGTTTTCAAAAGACTTAAGGAA 1434
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GGTTATACAATGGTCGCTGATGAGAAGAAAGGCTTAGTTGTTTTCAAAAGACTTAAGGAA 1446
Query 1435 TGTGGATTTACTCCAACAGTTGTTACTTATGGATGCCTCATTAATCTTTATACTAAGGTT 1494
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1447 TGTGGATTTACTCCAACAGTTGTTACTTATGGGTGCCTCATTAATCTTTATACTAAGGTT 1506
Query 1495 AGAAAGATTTCAAAAGCCTTGGAAGTTAGCAGAGTGATGAAGGAAGAGGGCGTAAAACAT 1554
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1507 GGAAAGATTTCAAAAGCCTTGGAAGTTAGTAGAGTGATGAAGGAAGAGGGCGTAAAGCAT 1566
Query 1555 AATTTAAAGACTTATTCGATGATGATCAATGGGTTTGTAAAACTAAAAGATTGGGCCAAT 1614
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1567 AATTTAAAGACTTATTCGATGATGATTAACGGATTTGTAAAACTAAAAGATTGGGCCAAT 1626
Query 1615 GCGTTTGCTGTATTTGAAGATATGGTAAATGAAGGCATGAAACCGGATGTTATACTATAT 1674
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1627 GCGTTTGCTGTATTTGAAGATATGGTAAAAGAAGGCATGAAACCAGATGTTATACTATAC 1686
Query 1675 AACAACATCATCGCAGCATTCTGTGGAATGGGTAACATGGATCGAGCGATCCAGACTGTT 1734
|||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1687 AACAACATCATCTCAGCATTCTGCGGGATGGGTAACATGGATCGAGCGATCCAGACTGTT 1746
Query 1735 AAGGAGATGCAAAAGCTGAGGCATAGACCAACCACACGGACATTTATGCCTATCATAAAT 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1747 AAGGAGATGCAAAAGCTGAGGCATAGACCAACCACACGGACATTTATGCCTATCATACAT 1806
Query 1795 GGATTTGCGAAATCCGGGGACATGAGGAGATCCCTAGAAGTTTTCGATATGATGAGGCGA 1854
|||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1807 GGATATGCGAAATCCGGAGACATGAGGAGATCACTAGAAGTTTTTGATATGATGAGACGA 1866
Query 1855 TGTGGGTGTGTTCCAACCGTTCACACTTTCAATGCTTTGATTAATGGTTTAGTTGAGAAA 1914
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1867 TGTGGGTGTGTTCCAACCGTTCATACTTTCAATGGTTTGATTAATGGTTTAGTTGAGAAA 1926
Query 1915 CGTCAGATGGAAAAGGCCGTTGAGATATTAGACGAGATGACATTGGCGGGTGTTAGTGCA 1974
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1927 CGTCAGATGGAAAAGGCGGTTGAGATATTAGACGAGATGACATTGGCGGGTGTAAGTGCA 1986
Query 1975 AACGAACACACTTACACAAAGATCATGCAAGGCTATGCATCAGTTGGTGATACTGGAAAA 2034
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1987 AACGAACATACTTACACAAAGATCATGCAAGGCTATGCATCAGTCGGTGATACCGGAAAA 2046
Query 2035 GCCTTTGAGTATTTTACAAGACTTCAAAACGAAGGTTTGGAGGTTGACATTTTCACTTAC 2094
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2047 GCCTTTGAGTATTTTACAAGGCTTCAAAACGAAGGTTTGGATGTTGACATTTTCACTTAC 2106
Query 2095 GAGGCGTTACTTAAAGCTTGCTGCAAATCAGGACGAATGCAGAGCGCATTAGCTGTCACG 2154
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2107 GAGGCGTTACTTAAAGCTTGCTGCAAATCAGGAAGAATGCAGAGCGCATTAGCTGTCACG 2166
Query 2155 AAAGAAATGAGCGCACGGAATATCCCGCGCAATTCCTTCGTCTATAACATATTAATTGAC 2214
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2167 AAAGAAATGAGTGCACGGAATATCCCGCGCAATTCCTTCGTCTATAACATATTAATCGAC 2226
Query 2215 GGATGGGCACGAAGAGGCGATGTATGGGAAGCCGCGGATTTGATACAGCAGATGAAAAAA 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 GGATGGGCACGAAGAGGCGATGTATGGGAAGCCGCGGATTTGATACAGCAGATGAAAAAA 2286
Query 2275 GAAGGTGTTAAACCAGACATTCATACTTACACATCCTTCATTAGCGCTTGTTCTAAGGCC 2334
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 GAAGGTGTTAAACCCGACATTCATACTTACACATCCTTCATTAGCGCTTGTTCTAAGGCC 2346
Query 2335 GGCGACATGAATAGAGCTACACAAACAATCGAAGAAATGGAAGCAATAGGGGTGAAACCT 2394
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 2347 GGCGACATGAATAGAGCTACACAAACAATCGAAGAAATGGAAGCACTAGGTGTGAAACCT 2406
Query 2395 AACATCAAGACATATACGACCTTGATAAAAGGATGGGCGCGAGCATCTCTTCCCGAGAAA 2454
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 2407 AACATCAAGACATACACGACCTTAATAAAAGGATGGGCGAGAGCATCTCTTCCAGAGAAA 2466
Query 2455 GCCTTAAGTTGCTACGAGGAAATGAAGGCGATGGGGCTAAAACCCGACAAAGCTGTGTAT 2514
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2467 GCCTTAAGTTGCTACGAGGAAATGAAGGCGATGGGGATAAAACCCGACAAAGCTGTGTAT 2526
Query 2515 CATTGCCTTCTGACTTCGCTTCTGTCGCGTGCTTCAATTGCAGAAGCTTACATCTACTCA 2574
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2527 CATTGCCTTCTGACTTCGCTTCTGTCGCGTGCTTCAATCGCAGAAGCTTACATTTACTCA 2586
Query 2575 GGAGTTATGACTATCTGCAAGGAAATGGTGGAGGCAGGCTTGATCGTTGATATGGGAACT 2634
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2587 GGAGTGATGACTATCTGCAAGGAAATGGTGGAGGCAGGCTTGATTGTTGATATGGGAACT 2646
Query 2635 GCGGTTCACTGGTCTAAATGTCTGTGTAAGATCGAAGGTTCTGGTGGTGAGCTCACTGAG 2694
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct 2647 GCGGTTCACTGGTCTAAATGTCTGTGTAAGATTGAAGCTTCAGGTGGTGAGCTCACTGAG 2706
Query 2695 ACGTTGCAGAAGACATTCCCACCTGATTGGAGCTCGCATCATCATCACCATGGCTTCTTG 2754
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2707 ACGTTGCAGAAGACTTTCCCACCTGATTGGAGCTCGCATCATCATCACCATGGCTTCTTA 2766
Query 2755 GATCAAATTTCtgatgttgactctgatgaagatgatgttgatggtgaggatgatgatgat 2814
|||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||| ||
Sbjct 2767 GATCAAGTTTCTGATGTTGACTCCGATGAAGATGATGTTGATGGTGAAGATGGTGAGGAC 2826
Query 2815 gatg 2818
||||
Sbjct 2827 GATG 2830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143326956151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5