BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487267
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04830.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 972 0.0
> AT5G04830.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein | chr5:1402045-1403845 REVERSE LENGTH=960
Length=960
Score = 972 bits (526), Expect = 0.0
Identities = 652/710 (92%), Gaps = 20/710 (3%)
Strand=Plus/Plus
Query 164 CAGCGATGGATCC-GTCACGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAAT 222
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 170 CAGCGATGGATCCAG-CGCGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAA- 227
Query 223 C-AGCGATTTGCTGATAATATCATGCCTCATCTTCTCAACTTGTACGGGTCTTGTGCAAA 281
| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 228 CAAGCGATTTGCTGATAAAATCATGCCTCATCTTCTCAACTTGTACGGGTCTAGTGCAAA 287
Query 282 AGCCAACGACTTTGACATGTATGCACCAAATGCCTCGTTTGAAGACCCTTTGACGCATGC 341
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 288 AGCCAACGATTTTGACATGTATGCACCAAATGCTTCATTTGAAGACCCTTTGACGCATGC 347
Query 342 TCAGGGAGTGAAGCAAATCAAATCAGCATTTTATTCACTCGCTAAGGTGTTTGGTGAGTC 401
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 348 TCAGGGAGTGAAGCAGATCAAATCAGCATTTTATTCACTCCCTAAGGTGTTTGGTGAGTC 407
Query 402 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAATCTCGCCTGGGAAGAAAGAGATACT 461
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 408 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAACCTCGCCGGGGAAGAAAGAGATACT 467
Query 462 AATTGACAACAAACAACATTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 521
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AATTGACAACAAACAACACTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 527
Query 522 CAAACTCTATGTCGAGAACGGGAAGATTGTCCGTCACGAAGACTGGTGGGACAAGAAACC 581
|| |||||||||||| |||||||||| || || || |||||||||||||||||||||||
Sbjct 528 TAAGCTCTATGTCGAGGACGGGAAGATCGTTCGACATGAAGACTGGTGGGACAAGAAACC 587
Query 582 TCTGAGGAACAGAGACACGGTTAGCTTCCCGTTGGTCGGGCGGGTAATGGAGATGGGTCG 641
||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 588 TCTGAGGAACAGAGACACGGTTAGCTTTCCATTAGTCGGACGGGTAATGGAGATGGGTCG 647
Query 642 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCACA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 648 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCCCA 707
Query 702 ATGAGCAAA-GGAAATACGCAACAAAACACACCGCATATTCTAGTGC-CTAGATTTCT-C 758
|||| |||| ||||| | | |||||||||| ||| || ||||| | || ||||| |
Sbjct 708 ATGAACAAATGGAAA-AT--A-CAAAACACACATCATGTTATAGTGTTC-AG-TTTCTTC 761
Query 759 AAAACAGTACTTGAATTTGAGGAACTCCTTAAATCCG-TTTGGTTTCGAATTTAGTTTAA 817
|||||| ||||||||||| || |||||||| |||| | ||||||||||||||||||||||
Sbjct 762 AAAACACTACTTGAATTTAAGAAACTCCTTTAATC-GATTTGGTTTCGAATTTAGTTTAA 820
Query 818 AAATCTGTAATA---T--GTTAATCTTCAGTTGGATTTTAGTCTGGTACG 862
|||| ||||||| | ||||||| || ||||| |||||||||||||||
Sbjct 821 AAATATGTAATACAGTATGTTAATCGTCTGTTGGTTTTTAGTCTGGTACG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5