BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487268
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04840.1 | Symbols: | bZIP protein | chr5:1405294-1407934 F... 1507 0.0
> AT5G04840.1 | Symbols: | bZIP protein | chr5:1405294-1407934
FORWARD LENGTH=1431
Length=1431
Score = 1507 bits (816), Expect = 0.0
Identities = 943/1001 (94%), Gaps = 22/1001 (2%)
Strand=Plus/Plus
Query 132 AAATT-GAATCATGTCAAGGCCTGCTCAGCTTCCTCCTCGTTGCCCCATCCCAAAGAAAC 190
||||| ||||||||||||||||||||| |||||| ||||||||||| || ||||||||||
Sbjct 211 AAATTCGAATCATGTCAAGGCCTGCTCCGCTTCCACCTCGTTGCCCGATTCCAAAGAAAC 270
Query 191 TGTCTTTGAGTCCGGTTGCAGATACATTCTATTCTTCTTCCTCTCCCATTGAATCATACA 250
| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 271 TTTCTTTGAGTCCAGTTGCAGATACATTCTACTCTTCTTCCTCACCCATTGAATCATACA 330
Query 251 TTGGTCAATACAAGTCTTCTACTCAAGATTCCAGGCTCGAGGATCAACCTGCTTGGCTTG 310
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 331 TTGGTCAATACAAGTCTTCTACTCAAGATTCCAGGCTCGAAGATCAACCTGCTTGGCTTG 390
Query 311 ATGAGTTGCTCTGTGAGAAAACAGATGGGATGCTCACTGGAGGAGGTCCTTTGCGCCGCT 370
|||||||||||||||| ||||| |||||| |||||||| ||||||||||| |||||||||
Sbjct 391 ATGAGTTGCTCTGTGACAAAACTGATGGGTTGCTCACTAGAGGAGGTCCTCTGCGCCGCT 450
Query 371 CAGCTAGCGACTCAGTTGTGCTTTTGGGAGACATCTCTGCTCA-TTTTTCTGGTTTTAAT 429
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||
Sbjct 451 CAGCTAGCGACTCAGTTGTGCTTTTGGGAGACATTTCTGCT-ACTTTTTCTGGTTTTGAT 509
Query 430 CAAAGTGAAGATGAAGAAAGTTTGAGTTCTGAAGCTTGTGGGGACTTGGAGTCAGCTTGT 489
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 510 CAAAGTGAGGATGAAGAAAGTTTGAGTTCTGAAGCTTGTGGGGACTTGGAGTCTGCTTGT 569
Query 490 GTATATGGTCCCAACTCGCCGAGAGCAAAGAACAACTCTAGCTTCTCTAACAACCCTATT 549
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 570 GTATATGGTCCCAACTCGCCAAGAGCAAAGAACAACTCTAGCTTCTCTAACAACCCTATT 629
Query 550 GCTTCTGCCTTTTCGGATTATGG-T-T----------CTCAGAACTTGGATGATACGGTG 597
||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 630 GCTTCTGCCTTTTCGGATTATGGTTCTCAGACACCGCCTCAGAACTTGGATGATACGGTG 689
Query 598 AAAGGGATCAACTGTACACCTGTTGCTGAAAATGCCTGTGGTTCAATGGGAATACCAAAT 657
|||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 690 AAAGGGATCAACCGTTCACCTGTTGCTGAAAATGCGTGTGGTTCAATGGGCATACCAAAT 749
Query 658 GCCAAAAGGAACCCGGGACAGCGTTCAAGAGTTCGTAAGCTCCAGTACATTGCTGAACTT 717
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 750 GCAAAAAGGAACCCGGGACAGCGTTCAAGGGTTCGTAAGCTCCAGTACATTGCTGAACTT 809
Query 718 GAGAGGACGGTAGGCATGTTGCAGACGGTGGAAGCGGATTTATCAGTGAGAGTGGCTTCA 777
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 810 GAGAGAACAGTAGGCATGTTGCAGACGGTGGAAGCAGATTTATCAGTGAGAGTGGCTTCA 869
Query 778 CTTCTACAGACACGTGCAACACTGTCCCTGGAGAATAGCCAGTTGAAGCAGCAGATGGCG 837
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 CTTCTTCAGACACGAGCAACACTGTCCCTGGAGAATAGCCAGTTGAAGCAGCAGATGGCG 929
Query 838 ATACTAAAGCAGGACAAGCTCATAAGAGAAGGTGAGTATCAGTTACTGAAGAAGGAAGCT 897
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 930 ATACTAAAGCAGGACAAGCTCATAAGGGAAGGTGAGTATCAGTTACTGAAGAAGGAAGCT 989
Query 898 CAGAGATTGAAATCTGGATTGGGATACTTAGGGAGCAATAACAACAATAACAGGCTGGTG 957
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 990 CAGAGATTGAAATCTGGATTGGGATACTTAGGGAGCACTAACAACAGTAACAGGCTGGTG 1049
Query 958 AGGTCATATTCTGCTGGTTCAAATGTAGCTCCAAGGACAGCTTCGTCCCACTTGGACTGG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AGGTCATATTCTGCTGGTTCAAATGTAGCTCCAAGGACAGCTTCGTCCCACTTGGACTGG 1109
Query 1018 AATTTGCTAGATCTGACCAAACTCAATCTCAACTAAAGTCTAAAGACAAAACCCTCCATA 1077
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1110 AATTTGCTAGATCTGACCAAACTCAATCTCAACTAAAG---A----CAAAACCCTCCATA 1162
Query 1078 AGAATAAGTAGCTTAAGTAATTCAGGAGTTAACAATTCTAT 1118
||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 1163 AGAATAAGTAGCTTAAGGAATTCAAGAGTTAACAGTTCTAT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5