BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487270
Length=2711
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 4030 0.0
AT2G10560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1142 0.0
AT2G10589.1 | Symbols: | unknown pseudogene | chr2:4115711-411... 346 7e-94
> AT5G04860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G11760.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:1411565-1414677 REVERSE LENGTH=2762
Length=2762
Score = 4030 bits (2182), Expect = 0.0
Identities = 2582/2765 (93%), Gaps = 68/2765 (2%)
Strand=Plus/Plus
Query 1 TCcttctctctactcttctctctcttttctcactttctttcttcAAATTTCAAATATTTT 60
||||||||||||||||| |||||| | | || || ||||||||||||||||||||||||
Sbjct 11 TCCTTCTCTCTACTCTTTTCTCTC-TCTGTCTCTCACTTTCTTCAAATTTCAAATATTTT 69
Query 61 GCGTCTGAATCACACCGCGTCCACCAAATCCTCCATGC-CCATCTCTTAAAATCCGATTC 119
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 70 GCGTCTGAATCACACCGCGTCCACCAAATCCTCCAT-CTCCATCTCTTAAAATCCGATTC 128
Query 120 TTTCCTCCGCAAATCTCGATTACTCCAATACCCTTTT-CTCTAAGATTC-AG-CC----A 172
|||||||||||||||||||||||||||| |||||||| ||||||||||| | || |
Sbjct 129 TTTCCTCCGCAAATCTCGATTACTCCAACACCCTTTTTCTCTAAGATTCCAAACCTTTTA 188
Query 173 C-TT----GT-G-A---A-TTGT-A-T-G---G-TGGTCAAAATGAAACAGATCATGCGT 214
|| || | | | |||| | | | | ||||||||||||||||||||||||||
Sbjct 189 GGTTTTTTGTTGCAGCCACTTGTGAATTGTATGGTGGTCAAAATGAAACAGATCATGCGT 248
Query 215 TGGCCACCGTGGCCTCCGCTCTTCGCCGTCAAATTCGACGTGATCGTCGTTGTTCACAAG 274
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 249 TGGCCACCGTGGCCTCCGCTCTTCGCCGTTAAATTCGACGTGATCGTCGTTGTTCACCAG 308
Query 275 ATGGATGGTTTGTTGGATTCCGATTGTGATGGCGATGATAGTACTGATCAGAGTCAGCGA 334
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 309 ATGGATGGTTTGTTGGATTCCGATGGTGGTGGCGATGATAGTACTGATCAGAGTCAGCGA 368
Query 335 GGAGG-GC--CTATAA-G-G-AAGAGACCTGTTGTTGAGATCAAATGGAAAGGACCTAAA 388
||||| | | | || | | |||||||||||||||||||||||||||||||||||||||
Sbjct 369 GGAGGAGGGACAACAACGAGGAAGAGACCTGTTGTTGAGATCAAATGGAAAGGACCTAAA 428
Query 389 TCGGTTACTCTTAAACGCTCCGTCGTACGGAATTTCACCGAAGAAGGAGGATTTCGTGGC 448
||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 429 TCGGTTACTCTCAAACGCTCCGTCGTACGGAATCTCACCGAAGAAGGTGGATTTCGCGGC 488
Query 449 GACGGCGTCGTTCAATGGAACGAAGAGTTCAAGAGGGTTTGTGAATTCTCTGTTTACAAG 508
|| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 489 GATGGCGTCGTTGAATGGAACGAAGAGTTTAAGAGGGTTTGCGAATTCTCTGTTTACAAG 548
Query 509 GAAGGATCGTTTCTTCCATGGATCGTTTCTTTAACCGTCTTGAGTGGACTGAATCAAGGA 568
||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 549 GAAGGATCGTTTCTTCCTTGGTTCGTTTCTTTAACCGTCTTCAGTGGACTGAATCAAGGA 608
Query 569 TCGAAGGAGAAAGTTCGTAGCTTTGGAAAGGCGTCACTGAACATTGCAGAACACTTTTCA 628
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 609 TCGAAGGAGAAAGTTCGTAGCTTTGGAAAGGCATCACTGAACATTGCAGAATACTTTTCA 668
Query 629 TTGATGAAAGAAGATGATGTTCAAGTCAAAGTGCCTCTGACGAATTGTGGCTCATCATCT 688
|||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||
Sbjct 669 TTGATGAAAGAAGATGATGTTCAAGTCAAAGTGCCTCTCAAGGATTGTGACTCATCATCT 728
Query 689 GTGCGAAGTCCATGTCTTCATATATCACTTCAGTTTTCTCCTAAAGAATCATTGCCTGAA 748
||| |||||||| | |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 729 GTGAGAAGTCCACATGTTCATATATCCCTTCAGTTTTCTCCTAAAGAATCGTTGCCTGAA 788
Query 749 AGACAGAGATCTGCTCTTCCTGTTCTATGGTCTCCTCTTTCCGCAGAGGCTGAGAAAGCT 808
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AGACAGAGGTCTGCTCTTCCTGTTCTATGGTCTCCTCTTTCCGCAGAGGCTGAGAAAGCT 848
Query 809 GAGTCTGTTGTTAAAGTAGGCCTGAGAAAGATGAAAACCTTCAACAGTTGCATGTCTAAT 868
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 849 GAGTCTGTTGTTAAAGTAGGCCTGAGAAAGATGAAGACCTTCAACAATTGCATGTCTAGT 908
Query 869 ACTCAGGCATCGGAAAAGGAGACTGAGAAAGATGGAAGCAGTGGAAGCGGAAGTGAAGGC 928
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 909 ACACAGGCATCGGAAAAGGAGAGTGAGAAAGATGGAAGCAGTGGAAGCGGAAGTGACGGC 968
Query 929 AAAAGCCCTGAGAGAAATCTTGATTCTGACTCCACTTATCCTTTTGATACAGATTCTCTA 988
||||| || ||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 969 AAAAGTCCGGAGAGAAATCTTGATTCTGACTCTAGTTATCCTTTTGATACAGATTCTTTA 1028
Query 989 GATGAAGGTGATGCTGCGGATGAATTAGAAGAGAACAAAGAGAATGAAAGTAGCTTAGCT 1048
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1029 GATGAAGGTGATGCTGCAGATGAATCAGAAGAGAACAAAGAGAATGAAAGTAGCTTAGCT 1088
Query 1049 GATCCAGTTAATTACAAAACACTTCGATCTGCTAATTGGGCTAGAGGCTCATTTCATACT 1108
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1089 GATCCAGTTAATTACAAAACACTTCGTTCTGCTAATTGGGCTAGAGGCTCATTTCATACT 1148
Query 1109 GATACAAACCCCGAATACGAGGATTTGATATATTACAGCCACCGCAGTCCATTAACAGAG 1168
| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1149 GTTACAAACCCCGAAGACGAGGATTTGATATATTACAGTCACCGCAGTCCATTAGCAGAG 1208
Query 1169 ACCGGACATTACGGTGATGAGGTTTCAAATGATGTAGTAAGCTTGGAGCAGGCTAAAGGA 1228
|| ||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1209 ACAGGACATTGCAGTGATGAGGTTTCCAATGATGTAGTAAGCTTGGAGCAGGCGAAAGGA 1268
Query 1229 CAAATGTCTAAGAAGAGAATGTTATCTTGGAAGAAGAGAAAACTCAGTTTTAGATCTCCT 1288
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1269 CAAATGTCTAAGAAGAGAATGTTATCTTGGAAGAAGAGAAAACTTAGTTTTAGATCTCCT 1328
Query 1289 AAACAGAAAGGCGAACCTCTTCTTAAAAAGGATTGTCTTGAAGAAGGAGGTGATGATATC 1348
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1329 AAACAGAAAGGCGAGCCTCTTCTTAAGAAGGATTGTCTTGAAGAAGGAGGTGATGATATC 1388
Query 1349 GATTTTGACCGCAGACAACTAAGTTCATCCGATGAGTCTAACTCTGATTGGTATAGGTCT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 GATTTTGACCGCAGACAACTAAGTTCATCCGATGAGTCTAACTCTGATTGGTATAGGTCT 1448
Query 1409 GATGATGCAATCATGAAACCATTATCCCAGTTTGGAGATGATGATTTCGTTGTTGGTAGT 1468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GATGATGCAATCATGAAACCATTATCCCAGTTTGGAGATGATGATTTCGTTGTTGGTAGC 1508
Query 1469 TGGGAAACCAAAGAAATTATAAGCCGTGATGGGCTGATGAAACTCACGGCTCGAGTATTT 1528
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 TGGGAGACCAAAGAGATTATAAGCCGTGATGGGCTGATGAAACTCACGGCTCGAGTATTT 1568
Query 1529 CTCGCATCAATCGATCAGAGAAGCGAGAGAGCTGCTGGAGAAAGCGCCTGCACAGCCCTA 1588
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1569 CTCGCATCAATTGATCAGAGAAGCGAGAGAGCTGCTGGAGAAAGCGCCTGCACAGCTCTA 1628
Query 1589 GTTGCAGTGATGGCAAATTGGTTAGGATCCAACCGAGACATAATCCCAACAAGGTCAGAG 1648
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1629 GTTGCAGTGATGGCACATTGGTTAGGATCCAACAGAGACATAATCCCAACAAGGTCAGAG 1688
Query 1649 TTTGACAGTCTTATCAGAGAAGGATCATCCGAGTGGAGAAATATGTGCGAAAACGAGGAA 1708
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1689 TTTGACAGTCTTATCAGAGAAGGATCATCCGAGTGGAGAAATATGTGTGAAAACGAGGAA 1748
Query 1709 TACCGGGAACGGTTTCCAGACAAACATTTCGATCTCGAGACGGTTCTCCAGGCAAAAGTC 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 TACCGGGAACGGTTTCCAGACAAACATTTCGATCTCGAGACGGTTCTCCAGGCAAAAGTC 1808
Query 1769 AGACCCATCTGTGTAGTCCCTGAGAA-ATCATTCATCGGGTTTTTCCATCCAGAGAAATC 1827
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1809 AGACCCATCTGTGTAGTCCCTGA-AAGATCATTCATCGGGTTTTTCCATCCAGAGAAATC 1867
Query 1828 AGAGGAAGAAGACG------------CTAGTCTAGATTTTCTCAAAGGTGTAATGTCCTT 1875
|||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1868 AGAGGAAGAAGAAGGAAAAGAAGATGCTAGTCTAGATTTTCTCAAAGGTGTAATGTCCTT 1927
Query 1876 TGACAGTATCTGGGAAGAGATCATGAAGCAAGAACCAGAAGAGTCGGCAAGTGAACCTGT 1935
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1928 TGACAGTATCTGGGAAGAGCTCATGAAACAAGAACCAGAAGAGTCGGCAAGCGAACCTGT 1987
Query 1936 GATCTACATTGTAAGCTGGAATGATCATTTCTTCGTACTCCTCGTGAACCATGATGCTTA 1995
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 1988 GATCTACATTGTAAGCTGGAATGATCATTTCTTTGTACTCCTTGTGAACCACGATGCTTA 2047
Query 1996 TTACATCATAGACACGCTTGGAGAGAGGCTCTATGAGGGTTGCAACCAAGCGTATGTCTT 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 TTACATCATAGACACGCTTGGAGAGAGGCTCTATGAGGGTTGCAACCAAGCGTATGTCTT 2107
Query 2056 GAAATTTGACAAAGATGCGGAGATCCAAAGATTACCATCTGTCGTCAAAGACAACAAAGC 2115
|||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 2108 GAAATTTGACAAAGATGCAGAGATCAAAAGATTACCATCCGTCATCAAAGACAACAAAGC 2167
Query 2116 CGACATGGGAAACCAGAAACAAGGTGGTAAGACCAAGTCTGAGCAACCCGAAAGATCAAA 2175
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2168 CGACATGGGAAACCAGAAACAAGGTGGTAAGAACAAGTCTGAGCAACCCGAAAGATCAAA 2227
Query 2176 AGAGTCAGATGAACAAGAAGTAG------TAGTGTGTAGAGGTAAAGAATCATGTAGAGA 2229
||| ||||| |||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 2228 AGAATCAGAAGAACAAGAAGAAGAAGAAGTAGTGTGTAGAGGTAAAGAGTCATGTAGAGA 2287
Query 2230 GTATATAAAGAGCTTTCTGGCCGCGATTCCGATACAGCAAGTTAAAGCTGATATGAAGAA 2289
|||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||
Sbjct 2288 GTATATAAAGAGCTTTCTCGCAGCGATTCCAATACAGCAAGTGAAAGCTGATATGAAGAA 2347
Query 2290 AGGACTAGTTTCGTCTTTGCATCACCGTCTTCAAATAGAGCTTCACTACACAAAACACCT 2349
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2348 AGGACTGGTTTCATCTTTGCATCACCGTCTTCAAATAGAGCTTCACTACACGAAACACCT 2407
Query 2350 TCATGACCACCAAGCC-AATCTGCTTGAATCCTGTGCAACCAAAGAAACTGTGTCTGAAG 2408
|||| |||||||| || ||| || ||||||||| ||||||| ||| ||||||||| ||||
Sbjct 2408 TCATCACCACCAA-CCTAATATGTTTGAATCCTCTGCAACCGAAGTAACTGTGTCAGAAG 2466
Query 2409 CTGCTGTGTCTGTGACAGTGGCTTGGTCATTGGCGAGCCAATTCAGCAATAGTGGTGGGT 2468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2467 CTGCTGTGTCTGTGACAGTGGCTTGGTCATTGGCGAGCCAATTCAGCAATAGTGGTGGGT 2526
Query 2469 TTGGTTGCGAAATGGCTGAGCTTTTGGGGGTAAAAGTTTAAGAGAATTGTATAGAGAAAA 2528
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2527 TTAGTTGCGAAATGGCTGAGCTTTTGGGGGTTAAAGTTTAAGAGAAGTGTATAGAGAAAA 2586
Query 2529 GGAGTTTCCCTT-TGTGTGAATTTTGATGTTTATAACATGATAACCGTCTT-GCTGTTTT 2586
||||||| |||| |||||||||||||||||||||||| |||||||| ||| | ||||||
Sbjct 2587 GGAGTTTTCCTTCTGTGTGAATTTTGATGTTTATAACTTGATAACCC-CTTTGGTGTTTT 2645
Query 2587 TCTGGCTAATTTGATGTTCATAATGTCTTCTTCTGTGGAGAGAGACTTTTCCTCCTCTCC 2646
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |
Sbjct 2646 TCTGGCTAATTTGATGTTCATAATGTCTTCT---GTGGAGATAGACTTTTACTCCTCAC- 2701
Query 2647 TAGACACCAATCATTTGTATTTAGGAAATTTACCAGAGTTATTATAAGTATTTAATAAAA 2706
| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2702 T---C-C-AATAATTTGTATTTAGGAAATTTACCAGAGTTATTATAAGTATTTAATAAAA 2756
Query 2707 TCGGT 2711
|||||
Sbjct 2757 TCGGT 2761
> AT2G10560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G04860.1);
Has 70 Blast hits to 70 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:4109862-4110698
REVERSE LENGTH=837
Length=837
Score = 1142 bits (618), Expect = 0.0
Identities = 768/838 (92%), Gaps = 20/838 (2%)
Strand=Plus/Plus
Query 1691 ATGTGCGAAAACGAGGAATACCGGGAACGGTTTCCAGACAAACATTTCGATCTCGAGACG 1750
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTGAAAACGAGGAATATCGGGAACGGTTTCCAGACAAACATTTCGATCTCGAGACG 60
Query 1751 GTTCTCCAGGCAAAAGTCAGACCCATCTGTGTAGTCCCTGAGAA-ATCATTCATCGGGTT 1809
|||||||| ||||||||||||||||||||||| |||||||| || | |||||||||||||
Sbjct 61 GTTCTCCAAGCAAAAGTCAGACCCATCTGTGTTGTCCCTGA-AAGAACATTCATCGGGTT 119
Query 1810 TTTCCATCCAGAGAAATC------AG-AG--G---AAGAAGACGCTAGTCTAGATTTTCT 1857
|||||||| ||||||||| || || | ||||||| | |||||||||||||||
Sbjct 120 TTTCCATCGAGAGAAATCAAAGGAAGAAGAAGAAAAAGAAGATGTTAGTCTAGATTTTCT 179
Query 1858 CAAAGGTGTAATGTCCTTTGACAGTATCTGGGAAGAGATCATGAAGCAAGAACCAGAAGA 1917
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TAAAGGTGTAATGTCCTTTGACAGTATCTGGGAAGAGATCATGAAACAAGAACCAGAAGA 239
Query 1918 GTCGGCAAGTGAACCTGTGATCTACATTGTAAGCTGGAATGATCATTTCTTCGTACTCCT 1977
||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 GTCGGCAAGCGAACATGTGATCTACATTGTAAGCTGGAATGATCATTACTTCGTACTCCT 299
Query 1978 CGTGAACCATGATGCTTATTACATCATAGACACGCTTGGAGAGAGGCTCTATGAGGGTTG 2037
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 TGTGAACCACGATGCTTATTACATCATAGACACGCTTGGAGAGAGGGTCTATGAGGGTTG 359
Query 2038 CAACCAAGCGTATGTCTTGAAATTTGACAAAGATGCGGAGATCCAAAGATTACCATCTGT 2097
|||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||
Sbjct 360 CAACCAAGCGTATGTCTTGAAATTTGACCAAGATGCAGAGATCAAAAGATTACCATCCGT 419
Query 2098 CGTCAAAGACAACAAAGCCGACATGGGAAACCAGAAACAAGGTGGTAAGACCAAGTCTGA 2157
| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 420 CATCAAAGACAACAAAGCCGACATGGGAAGCCAGAAACAAGGTGGTAAGAACAAGTATGA 479
Query 2158 GCAACCCGAAAGATCAAAAGAGTCAGATGAAC------AAGAAGTAGTAGTGTGTAGAGG 2211
||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 480 GCAACCCGAAAGATCAAAAGAATCAGAAGAACAAGGAGAAGAAGTAGTAGTGTGTAGAGG 539
Query 2212 TAAAGAATCATGTAGAGAGTATATAAAGAGCTTTCTGGCCGCGATTCCGATACAGCAAGT 2271
|||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 540 TAAAGAGTCATGTAGAGAGTATATAAAGAGCTTTCTCGCAGCGATTCCAATACAGCAAGT 599
Query 2272 TAAAGCTGATATGAAGAAAGGACTAGTTTCGTCTTTGCATCACCGTCTTCAAATAGAGCT 2331
||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 600 GAAAGCTGATATGAAGGAAGGACTGGTTTCATCTTTTCATCACCGTCTTCAAATAGAGCT 659
Query 2332 TCACTACACAAAACACCTTCATGACCACCAAGCCAATCTGCTTGAATCCTGTGCAACCAA 2391
| ||||||| |||||||||||| ||| |||| ||||| || ||||||||| | |||||||
Sbjct 660 TTACTACACCAAACACCTTCATCACCGCCAACCCAATATGTTTGAATCCTCTACAACCAA 719
Query 2392 AGAAACTGTGTCTGAAGCTGCTGTGTCTGTGACAGTGGCTTGGTCATTGGCGAGCCAATT 2451
|| ||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 720 AGTAACTGTGTCAGAAGCTACTGTGTCTATGACAGTGGCTTGGTTATTGGCGAGCCAATT 779
Query 2452 CAGCAATAGTGGTGGGTTTGGTTGCGAAATGGCTGAGCTTTTGGGGGTAAAAGTTTAA 2509
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 CAGCAATAGTGGTGGGTTTGGTTGCGAAATGGCTGAGCTTTTGGGGATAAAAGTTTAA 837
> AT2G10589.1 | Symbols: | unknown pseudogene | chr2:4115711-4115994
REVERSE LENGTH=201
Length=201
Score = 346 bits (187), Expect = 7e-94
Identities = 195/199 (98%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1232 ATGTCTAAGAAGAGAATGTTATCTTGGAAGAAGAGAAAACTCAGTTTTAGATCTCCTAAA 1291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTCTAAGAAGAGAATGTTATCTTGGAAGAAGAGAAAACTCAGTTTTAGATCTCCAAAA 60
Query 1292 CAGAAAGGCGAACCTCTTCTTAAAAAGGATTGTCTTGAAGAAGGAGGTGATGATATCGAT 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGAAAGGCGAACCTCTTCTTAAAAAGGATTGTCTTGAAGAAGGAGGTGATGATATCGAT 120
Query 1352 TTTGACCGCAGACAACTAAGTTCATCCGATGAGTCTAACTCTGATTGGTATAGGTCTGAT 1411
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TTTGACCGCAGACAACTAAGCTCATCCGATGAGTCTAACTCTAATTGGTATAGGTCTGAT 180
Query 1412 GATGCAATCATGAAACCAT 1430
|||||| ||||||||||||
Sbjct 181 GATGCAGTCATGAAACCAT 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134648075012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5