BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487275
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily... 1709 0.0
> AT5G04890.1 | Symbols: RTM2 | HSP20-like chaperones superfamily
protein | chr5:1427173-1428454 FORWARD LENGTH=1209
Length=1209
Score = 1709 bits (925), Expect = 0.0
Identities = 1059/1122 (94%), Gaps = 16/1122 (1%)
Strand=Plus/Plus
Query 1 TAATTGATAATGGCAGCGAGACAACAACAGAAAGGAACAGGCTTGGGGGTTCAGTACGAG 60
||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct 36 TAATTAATAATGGCAGCGAGACAGCAACAAAAAGGAACAGGCTTCGGGGTTCAATACGAG 95
Query 61 GACTTTGTCCCCAAATCCGAATGGAAAGATCAACCTGAAGCCACCATTCTCAACATTGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 GACTTTGTCCCCAAATCCGAATGGAAAGATCAACCTGAAGCCACCATTCTCAACATTGAC 155
Query 121 CTTCCAGGTTTTGCAAAGGAGCAAATGAAAGTAACGTATGTGCACAGCTCGAAGATGATA 180
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 156 CTAACAGGTTTTGCAAAGGAGCAAATGAAAGTGACGTATGTGCACAGCTCGAAGATGATA 215
Query 181 AAAATCACGGGAGAACGTCCCTTGGCTAATCGAAAATGGAGCCGTTTCAACGAGGTGTTC 240
| | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 216 AGAGTCACTGGAGAACGTCCCTTGGCTAATCGGAAATGGAGCCGTTTCAACGAGGTGTTC 275
Query 241 ACTGTTCCACAGAATTGTCTAGTGGATAAGATCCATGGAAGCTTCAAGAACAATGTCCTC 300
|||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 276 ACTGTTCCACAGAATTGTTTAGTGGATAAGATCCATGGGAGCTTTAAGAACAATGTCCTC 335
Query 301 ACCATCACCATGCCTAAGGAGACGATCACAAAGGTGGCTTATCTTCCAGAAGCTTCTAAA 360
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
Sbjct 336 ACCATCACCATGCCTAAGGAGACGATCACGAAGGTGGCTTATCTTCCAGAAACTTCTAGA 395
Query 361 ACTGAAGCTGCTGCTCTGGAGAAGGCGACgaagctagaggagaagaggttgttagaagaa 420
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 396 ACTGAAGCTGCTGCTCTGGAGAAGGCGGCGAAGCTAGAGGAGAAGAGATTGTTAGAAGAA 455
Query 421 tccagaaggaaagagatggaagaggaagaagctaagcagaagaagaagcagcttctggaa 480
|| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 456 TCTAGAAGGAAAGAGAAGGAAGAAGAAGAAGCTAAGCAGATGAAGAAGCAGCTTCTGGAA 515
Query 481 gagaaagagGCGCTAATTCGGAAGCTGCAAGAAGAAGCTAAAGCAAAGGAAGAGGCTGAA 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GAGAAAGAGGCGCTAATTAGGAAGCTGCAAGAAGAAGCTAAAGCAAAGGAAGAGGCTGAA 575
Query 541 ATGAGGAAGCTTCGAGAAGAAGCTAAAGCAAAGGA-GATGGCTGAGGC--A-AAGCTTCT 596
||||||||||||| ||||||||||||||||||||| || ||| | ||| | |||||||
Sbjct 576 ATGAGGAAGCTTCAAGAAGAAGCTAAAGCAAAGGAGGA-GGCCGCGGCAAAGAAGCTTCA 634
Query 597 AGAAGAAGCTAAGGAATCAAGAGAGAAACTTGAGGAGTGGAAGCTTAAGGAAAGGAAG-C 655
||||||| | ||| ||| |||||||||||||||| | ||||| |||||||| || |
Sbjct 635 AGAAGAA---ATTGAAGCAAAAGAGAAACTTGAGGAGAGAAAGCTCGAGGAAAGG-AGAC 690
Query 656 TTGAGGAGAGGAAGCTTGAGGATATGAAGCTTGCGGAAGAAGCTAAACTAAAGAAGATCC 715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TTGAGGAGAGGAAGCTCGAGGATATGAAGCTTGCGGAAGAAGCTAAACTAAAGAAGATCC 750
Query 716 AGGAGAGAAAGTCTGTTGATGAATCTGGAGGAAAAGAGAAGATACTAAAGCCAGAAGTGG 775
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 751 AGGAGAGAAAGTCTGTTGATGAATCTGGAGAAAAAGAGAAGATACTAAAGCCAGAAGTGG 810
Query 776 TCTATACAAAATCCGGGCCCGTGGCTACTCCCAAACCTGAGTCCGGGTCTGGTCTCAAGT 835
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 811 TCTATACAAAATCCGGGCACGTGGCTACTCCCAAACCTGAGTCGGGGTCTGGTCTCAAGT 870
Query 836 CCGGGTTTGGAG---TAGGCGAGGTGGTGAAGTCAGCggaagaaaaaataggaaacttgg 892
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 871 CCGGGTTTGGAGGAGTAGGCGAGGTGGTGAAGTCAGCGGAAGAAAAACTAGGAAACTTGG 930
Query 893 tggagaaggaaaagaaaatggggaaagggataatggagaaaatAAGGAGGAAAGAGATAA 952
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 931 TGGAAAAGGAAAAGAAAATGGGGAAAGGGATAATGGAGAAAATAAGAAGGAAAGAGATAA 990
Query 953 CAAGTGAAGAGAAGAAGTTGATGATCAATGTAGGAGTGGCTGCtcttgttatctttgctc 1012
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 991 CAAGTGAAGAGAAGAAGTTGATGATGAATGTAGGAGTGGCTGCTCTTGTTATCTTTGCTC 1050
Query 1013 ttggagcttatgtttcttataccttctgctcttcttctccttcttcttcctcttcgtctc 1072
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1051 TCGGAGCTTATGTTTCTTATACCTTCTGCTCTTCTTCTTCTTCTTCTTCCTCTTCGTCTC 1110
Query 1073 cttcttcatcatcatcttcttctACCAAACCAGAATGATATA 1114
|||||||||||||||||||| |||||||||||||||||||
Sbjct 1111 CTTCTTCATCATCATCTTCT---ACCAAACCAGAATGATATA 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54618192960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5