BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487277
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04910.1 | Symbols: | unknown protein; Has 71 Blast hits to... 1090 0.0
> AT5G04910.1 | Symbols: | unknown protein; Has 71 Blast hits
to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa
- 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes
- 14 (source: NCBI BLink). | chr5:1437614-1438770 FORWARD
LENGTH=750
Length=750
Score = 1090 bits (590), Expect = 0.0
Identities = 699/751 (93%), Gaps = 9/751 (1%)
Strand=Plus/Plus
Query 1 GCAACTTTCTCTTTG---CTTC-T-TCT-TCTCTCTGTCGTGTTTGAGAAGACG-GAAGA 53
||||||||||||||| |||| | ||| ||||||||||||||||||||||||| ||||
Sbjct 1 GCAACTTTCTCTTTGCTTCTTCGTCTCTCTCTCTCTGTCGTGTTTGAGAAGACGAAAAGA 60
Query 54 GTCGGAGAAAAAGATCGGAGGATGAGTGCCGAAGATTTCCAGAAGAAGGTCTCCATCAGA 113
|||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||||
Sbjct 61 GTCGGAGAGAAAGATCGGACGATGAGTGCCGAAGATTTCCAGAAGAAGGTTTCCCTCAGA 120
Query 114 GATTCCCTCGCCGGAGAAATCGA-AATCGAATGCGGCGTTTCCGGCGACGGGTCTACTAG 172
||||||||| |||| || || || || ||||||||||| |||||| | ||||||||||||
Sbjct 121 GATTCCCTCTCCGGCGATATTGAGAA-CGAATGCGGCGGTTCCGGTGTCGGGTCTACTAG 179
Query 173 TTCCACGGTAGGCTCCGGCGTCGCCTCGCAAACCCTGGTTCTGCTTCGGAGTCTGCTGGA 232
||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 180 TTCGACGGTGGGCTCCGGCGTCGCCTCTCAAACCCTGGTCCTGCTTCGGAGTCTGTTGGA 239
Query 233 GATTCAGCAGCGTCGAGCTCAGGCTTACGCTAAGCTCAAAAGTGGATTCTCAGAGTATGT 292
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 240 GATTCAGCAGCGCCGAGCTCAGGCTTACGCCAATCTCAAAAGTGGATTCTCAGAGTATGT 299
Query 293 GGAGTCTGGTGCTGAACCACTTTATCAGACGCTGTGCAGCGAGATTACAACGGAGTTCAG 352
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 GGAGTCTGGTGCTGAAGCACTTTATCAGAAGCTGTGCAGCGAGATTACAACGGAGTTCAG 359
Query 353 TGAATGTTCGAAACAAGTGCGCGAAATGGAATCTCAGTTTCTGAATCCACAAGTCGGTAG 412
||||||||||||||||||||||||||||||||||| |||||| |||||| |||| || ||
Sbjct 360 TGAATGTTCGAAACAAGTGCGCGAAATGGAATCTCTGTTTCTAAATCCAGAAGTTGGAAG 419
Query 413 AGCTGATCTTGCTCAACTTCTCAGCGACATTCAAACTCAAGAGAAGCAGAAATTGCATCT 472
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCTGATCTTGCTAAACTTCTCAGCGACATTCAAACTCAAGAGAAGCAGAAATTGCATCT 479
Query 473 GACCGTCACAATACAGGTGCTGAAGAAGGCAGGGAGACCGTCAGAACGAATGCTGACACA 532
||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 GACTGTTACAATACAGGTACTGAAGAAGGCAGGAAGACCGTCAGAACGAATGCTGACACA 539
Query 533 TGAGAACTGCAAATTCAAGAAACCGATGCAGCACGAGTGTGTGCATCTTCATGAGATTAC 592
||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 540 TGAGAACTGCAAATTCAAGAAGCCTATGCAACACGAGTGCGTGCATCTTCATGAGATTAC 599
Query 593 TGAAGCTGCAGGAACAGAGGAAGCAGAAGCGGATGCAGAGTTTGATAACGCCTTAAAGGA 652
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 600 TGAAGCTGCAGGAACAGAGGAAGCAGAAGCAGATGCAGAGTTTGATAACGCTTTGAAGGA 659
Query 653 GGCCATTAGAGGAGTGCAAGACGCTGTGACTAGCATCAATGAGTATTTGGAAGACATTCG 712
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCCATTAGAGGAGTGCAAGATGCTGTGACTAGCATCAATGAGTATTTGGAAGACATTCG 719
Query 713 GTACGAGATTGAAGCCCTTGAAGCTCATTAA 743
||| |||||||||||||| |||||| |||||
Sbjct 720 GTATGAGATTGAAGCCCTCGAAGCTGATTAA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5