BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487278
Length=1567
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04920.1 | Symbols: | EAP30/Vps36 family protein | chr5:143... 2261 0.0
> AT5G04920.1 | Symbols: | EAP30/Vps36 family protein | chr5:1438959-1441983
REVERSE LENGTH=1868
Length=1868
Score = 2261 bits (1224), Expect = 0.0
Identities = 1412/1498 (94%), Gaps = 31/1498 (2%)
Strand=Plus/Plus
Query 1 TTGGTCAACCGATCTATTGATTGGACTAGAGAGGAACGCAGCTGAAAAGCTGTATGATCT 60
|||||||||||||||||| ||| ||||||||||| | | | | ||||||||||| |
Sbjct 259 TTGGTCAACCGATCTATTAATTTGACTAGAGAGG-A---A-C-G---AGCTGTATGATAT 309
Query 61 ATCTGCTTCCGAATTGAGTCTCCATGGCTAGTGGAAGCAGCAGCATCGGAATCGATGGtt 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 310 ATCTGCTTCCGAATTGAGTCTCCATGGCTAGTGGAAGCAGCAGCATCGCAATCGGTGGTT 369
Query 121 tttttGAGAACGCGGAGGTGACTACGAGTGGAAGACCAGTGCTTCGTCGCAATGAGGTCG 180
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 370 TGTTTGAGAACGCGGAGGTGACTACGAGTGGTAGACCAGTGCTTCGTCGCAATGAGGTCG 429
Query 181 AATGTTTCCTCCTATCCTCCGTCGATATAGATTCCGAAGATGATCCGCCGCGATTCACCG 240
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 430 AATGTTTCCTCCTCTCCTCCATCGATATAGATTCCGAAGATGATCCGCCGCGATTCACAG 489
Query 241 CTTTGAGGTCTGGAAATCTAATTCTAACAACTCATCGTCTCATATGGATTCCTTCTCAAT 300
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 490 CTTTGAGGTCTGGAAATCTAATCCTTACCACTCATCGTCTCATATGGATTCCTTCTCAAT 549
Query 301 CAAACGGAGCTGTTCCTTCTTCAG-TTCCTCTCGCCGCCGTTACTCATATCT-TCTCCCA 358
|||||| | ||||||||||||| | |||| ||| ||||||||||||| |||| | |||||
Sbjct 550 CAAACGAATCTGTTCCTTCTTC-GATTCCGCTCTCCGCCGTTACTCACATCTAT-TCCCA 607
Query 359 TAAGAAATCAATCAAGTCTATGTTCCATTCGCCGAGAATCCGATTTCAAGC-GAACCCGG 417
||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |
Sbjct 608 TAAGAAATCAATCAAGTCTATGTTCCATTCGCCTAGAATCCGATTTCAAGCGGATCCC-G 666
Query 418 GTTCGATTGTTGTAACGATTGTCTTTAGGGGGAAAGGGGATTTTGATGAATTTTTGACGA 477
|||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||
Sbjct 667 GTTCGATTGTTGTAACGATTGTGTTTAGAGGGAAAGGGGATTTTGATGGCTTTTTGTCGA 726
Query 478 AATTGTGGGAATGTTGGAGAGGCAGAGCATGGGAAGAGGAGGAGAAGAGCGAGAGTGAGA 537
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 727 AATTGTGGGAATGTTGGAGAGGTAGGGCATGGGAAGAAGAGGAGAAGAGCGAGAGTGAGA 786
Query 538 CTTCAAGGTCAGGATCTGGAACTGTTGCGCAAGGTTTGTATGGAAACGATGGAACGGTGA 597
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 787 CTTCAAAGTCAGGATCTGGAACAGTTGCGCAAGGTTTGTATGGAAACGATGGAACGGTGA 846
Query 598 GGATGGTGGGATTGGCTGGGATTTTGAGGAAGGAGCAAGAACAGTGGGAGAGCACAGACA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 847 GGATGGTGGGATTGGCTGGGATTTTGAGGAAGGAGCAAGAACAGTGGGAGAGCACAGATA 906
Query 658 AGAGCTTGCAAGATGCTTTTCAGGATTTGAATGCTCTTATGAGTAAGGCTAAAGAGATGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AGAGCTTGCAAGATGCTTTTCAGGATTTGAATGCTCTTATGAGTAAGGCTAAAGAGATGG 966
Query 718 TGAGTCTGGCAGAAAAAATGCGGCAGAAGCTTTTGTCTGCTCCTAGTAGTCAGAACGGTT 777
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TGAGTCTGGCAGAGAAAATGCGGCAGAAGCTTTTGTCTGCTCCTAGTAGTCAGAACGGTT 1026
Query 778 CAACTGATGATGAAGAAATGGGGTCCAAAGAAGAAATGCAACAGTGGATGTTGAGCGTTG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CAACTGATGATGAAGAAATGGGGTCCAAAGAAGAAATGCAACAGTGGATGTTGAGCGTTG 1086
Query 838 GTATTATCTCCCCAGTTACAAAGGAATCTGCTGGTGCATTGTACCACCAAGAATTGTCCC 897
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GTATTATCTCACCAGTTACAAAGGAATCTGCTGGTGCATTGTACCACCAAGAATTGTCCC 1146
Query 898 GCCAGTTGGCAGATTTTGTCAGAATCCCATTAGAACAAGCTGGGGGGATGATCAGCCTTA 957
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1147 GCCAGTTGGCAGATTTTGTCAGAATCCCATTAGAAAAAGCTGGGGGAATGATCAGCCTTA 1206
Query 958 CTGATATGTATTACCACTTCAACCGAGCTCGTGGGACAGAGTTGATTTCTCCAGACGATT 1017
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1207 CTGATATGTATTACCACTTCAACCGAGCTCGTGGGACAGAGTTGATTTCCCCAGACGATT 1266
Query 1018 TGTGGCAAGCTTGTACCCTCTGGGAAAAATTTGATGTTCCAGTAATGCTGCGGAAGTTTG 1077
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1267 TGTGGCAAGCTTGTACCCTCTGGGAGAAATTTGATGTTCCAGTAATGCTGCGGAAGTTTG 1326
Query 1078 ATAGCGGTGTGATGGTCATCCAAAACAAGTCTCACAGCGACGAAGAGGTTATGAGTAGAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 ATAGCGGTGTGATGGTCATCCAAAACAAGTCTCACAGCGACGAAGAGGTTATGAGTAGAA 1386
Query 1138 TTAAAATGCTTGTGACAAAAACTGAAACTCTTAGAGTTGGAGTCACTGCTAGTGATGCAG 1197
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1387 TCAGAATGCTTGTGACAAAAACTGAAACTCTTAGAGTTGGAGTTACTGCTAGTGATGCAG 1446
Query 1198 CTTTGACGCTGAAGATCGCTCCTGCCATGGCTAAGGAACATCTACTAACTGCAGAGACCA 1257
|||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1447 CTTTGACGCTAAAGATTGCTCCTGCCATGGCTAAGGAACATCTACTATCTGCAGAGACCA 1506
Query 1258 AAGGTTTGCTATGTAGGGACATGAGCCCAGATGGGCTTCGATTCTATTTCAATCTGTTCC 1317
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1507 AAGGTTTGCTATGTAGAGACATGAGCCCAGATGGGCTTCGATTCTATTTCAACCTGTTTC 1566
Query 1318 CCGAGATCGATCCCACCAATATCCATATAGTCAAGGACTTTGGGACGTACGGTGAATGGA 1377
||||||| ||||| |||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 1567 CCGAGATTGATCCAACCAATCTCCATATAGTCAAGGAGTTTGGGACATACGGTGAATGGA 1626
Query 1378 TCAAAGCGACCAGTTTGTTGTCTGTATGACAAAGCTTTT--T--AA--TA-----AC-A- 1424
||||||||||||||||||||||||||||||||||||||| | || || | |
Sbjct 1627 TCAAAGCGACCAGTTTGTTGTCTGTATGACAAAGCTTTTGCTGTAAACTATTTGTAATAA 1686
Query 1425 --CATACAAAATATACAAACATAAATTTGGATTTTTGACTCAAAAATGCCAATAAttt 1480
||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||
Sbjct 1687 GACATACAAAATATACAAACACAAATTTGGATTTT-GAATCAAAATTGCCAATAATTT 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77359039845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5