BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487283
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase... 2639 0.0
AT3G10710.1 | Symbols: RHS12 | root hair specific 12 | chr3:335... 459 6e-128
> AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:1461907-1463969 FORWARD LENGTH=1933
Length=1933
Score = 2639 bits (1429), Expect = 0.0
Identities = 1713/1847 (93%), Gaps = 31/1847 (2%)
Strand=Plus/Plus
Query 25 TCACATACGAGAGGCCAGG-TAGGAGGAAATTACCAAAATGTCCTCCTATGGCAGACTTG 83
||||| |||||||||| || |||||||||||||| |||||||||||||| |||||||| |
Sbjct 42 TCACAAACGAGAGGCC-GGTTAGGAGGAAATTACAAAAATGTCCTCCTACGGCAGACTCG 100
Query 84 ACGAGCATGAGCAATCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATCGCCATTA 143
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 101 ACGAGCATGAGCAAGCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATTGCCATCA 160
Query 144 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCATCGTTGGAACCACAG 203
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 161 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCGTCGTTGGAACCACAG 220
Query 204 CTTACGATAACGGCAAGAAATCGCCAACGGAGAGTAACGGAGAGCCAATCTCCGTCTCGG 263
|| ||||||| |||||||| | || ||||||| ||||||||||||||| || ||||| |
Sbjct 221 CTCGCGATAACAGCAAGAAACCACCGACGGAGAATAACGGAGAGCCAATATCAGTCTCCG 280
Query 264 TGAAAGCCGTGTGCGACGTGACATTGCACAAAGACAAATGTTTTGAGACCATTGGAACGG 323
|||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||| |||
Sbjct 281 TGAAAGCCCTGTGCGACGTGACATTGCACAAAGAAAAATGTTTCGAGACCCTTGGATCGG 340
Query 324 CTCCAAACGCGAGCC-AACTAAACCCGGAGGAGCTTTTCAAGTACGCAGTCAAAATCACC 382
||||||||||||||| | | || ||| |||||||||||||||||||| |||||| |||||
Sbjct 341 CTCCAAACGCGAGCCGATC-AAGCCCAGAGGAGCTTTTCAAGTACGCCGTCAAAGTCACC 399
Query 383 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 459
Query 443 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATTGGACTAGCCGTTGACCAACTCAAC 502
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 460 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATCGGGCTAGCCGTTGATCAACTCAAC 519
Query 503 GAGACGATGACGTCAATGAAAGACAAAACGACGTCGCCCTTGAAGAGCGTCGACGATCTC 562
|| | | |||| ||||||| ||||||||| | | ||||||||
Sbjct 520 --GA--A--A---CAAT------------GACGTCGTCCTTGAAGAACTTTGACGATCTA 558
Query 563 AGGACGTGGCTTAGCTCCGTGGAAACGTACCAAGAAACATGTATGGACGCATTAGTGGAA 622
|||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||
Sbjct 559 AGGACGTGGCTTAGCTCCGTGGGAACGTACCAAGAAACGTGTATGGATGCGTTAGTGGAA 618
Query 623 GCGAACAAACCAGGTTTGACAACTTTCGGTGAAAACCATTTGAAAAACTCGACGGAGATG 682
|||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 619 GCGAACAAACCAAGTTTAACGACTTTCGGAGAAAACCATTTGAAAAACTCGACGGAGATG 678
Query 683 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATAGCTGACACCGTTAAGTTT 742
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 679 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATCGCTGACACCGTTAAGTTT 738
Query 743 AGACGACGTCGGTTGATGGCTACCGGTGACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 802
||||||||||| ||| ||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 739 AGACGACGTCGTTTGTTGGAGACTGGTAACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 798
Query 803 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTT-AAGGAAGAAAGCGACCATCGTGGT 861
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 799 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTTGAA-GAAGAAAGCGACTATCGTGGT 857
Query 862 GGCCAAAGACGGCTCAGGGAAGTATAGGACGATAGGTGAGGCTTTAGCGGAAGTGGAGGA 921
||| |||||||| || ||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 858 GGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGTGAGGCTTTAGCGGAAGTGGAGGA 917
Query 922 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTGGAGAATGTTAG 981
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 918 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTAGAGAATGTTAG 977
Query 982 GGTTGAGAAGAAGAAATGGAATGTTGTGATGGTTGGAGATGGACAGAGTAAGACTATCGT 1041
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 978 GGTTGAGAAGACGAAATGGAATGTTGTGATGGTTGGAGATGGACAAAGTAAGACTATCGT 1037
Query 1042 CTCTGCTGGACTCAACTTCATCGATGGAACACCCACGTTCGAAACCGCCACATTTGCTGT 1101
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1038 CTCTGCTGGACTCAACTTCATCGATGGAACCCCCACTTTCGAAACCGCCACATTTGCTGT 1097
Query 1102 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAATACAGCTGGTCCAACCAA 1161
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1098 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACACAGCTGGTCCAGCTAA 1157
Query 1162 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTGTCTGTGTTCTACAAGTGCACTAT 1221
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1158 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTATCTGTGTTCTACAAGTGCACCAT 1217
Query 1222 GGATGCTTTCCAAGACACGATGTACGCTCATGCCCAACGTCAGTTTTACCGTGATTGTGT 1281
||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1218 GGACGCTTTCCAAGATACAATGTACGCTCATGCACAACGTCAGTTTTACCGTGATTGTGT 1277
Query 1282 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAATTGTGA 1341
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1278 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAAGTGCGA 1337
Query 1342 GATCTTGCCTCGTCGTCCTATGGAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1401
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1338 GATCTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1397
Query 1402 AGATCCGAACCAAAACACCGGAATCTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1461
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1398 AGATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1457
Query 1462 CCTAACCGATATCCAAACGTTCCTAGGCCGGCCTTGGAAGGACTTCTCCACAACGGTGAT 1521
| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1458 CTTAACCGATATCCAAACATTCCTAGGCCGGCCTTGGAAGGATTTCTCTACAACGGTTAT 1517
Query 1522 CATGAAGTCGTACATGGACAAATTTATCAACCCGAAAGGGTGGTTACCGTGGACAGGATA 1581
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1518 CATGAAGTCGTTCATGGACAAATTCATCAACCCGAAAGGGTGGTTACCGTGGACAGGAGA 1577
Query 1582 TGCCGCACCATACACCATCTTTTACGCCGAATACTTAAATTCCGGGCCAGGAGCCTCGAC 1641
| |||| ||| |||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1578 TACCGCGCCAGACACGATCTTTTACGCCGAGTACTTAAATTCCGGGCCAGGAGCATCGAC 1637
Query 1642 CAAGAACCGGGTTAAGTGGAAAGGGTTGAAGACGTCTTTAACAAATAAGGAAGCAAATAA 1701
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1638 CAAGAACCGGGTTAAGTGGCAAGGGTTGAAGACGTCTTTAACAAAGAAGGAAGCAAATAA 1697
Query 1702 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCAACCAAAGTTCCGTT 1761
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1698 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCTACCAAAGTTCCCTT 1757
Query 1762 CAAATCTGATTTTTGATATTATTTGCCGGAAAAAGGCTGGTCTGAAAATTGATGGC-TAG 1820
||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| | | |
Sbjct 1758 CAACTCTGATTTTTGATATTTTTTGCTGGAAAA-GGCTGGTCTGAAAACTGATG-CATGG 1815
Query 1821 CTAGTCGTTCTTTAATTTGGTTTCTAACGAACATACAATATTTCCTT 1867
||||||||||||||||||| ||| |||||||||||||| ||| ||||
Sbjct 1816 CTAGTCGTTCTTTAATTTG-TTTATAACGAACATACAACATTCCCTT 1861
> AT3G10710.1 | Symbols: RHS12 | root hair specific 12 | chr3:3352289-3354237
FORWARD LENGTH=1686
Length=1686
Score = 459 bits (248), Expect = 6e-128
Identities = 712/931 (76%), Gaps = 51/931 (5%)
Strand=Plus/Plus
Query 857 GTGGTGGCCAAAGACGGCTCAGGGAAGTATAGGACGAT-AGGTGAGGCTTTAGC-GGAAG 914
|||||||| || || || |||||||||||||| ||||| | | | ||||||| | || |
Sbjct 769 GTGGTGGCGAAGGATGGTTCAGGGAAGTATAGAACGATAAAGAG-GGCTTTA-CAAGATG 826
Query 915 TG-GAGGAGAAGAATGAGAA-ACCTACGATTATATATGTGAAGAAAGGAGTTTATTTGGA 972
|| | ||||||| |||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 827 TGCCA-GAGAAGAGTGAGAAGA-GGACGATTATATATGTGAAGAAAGGAGTTTATTTTGA 884
Query 973 GAATGTTAGGGTTGAGAAGAAGAAATGGAATGTTGT-GATGGTTGGAGATGGAC-AGAGT 1030
|||||| | ||| |||||||||| ||||||||| | | ||||||||||||| | ||||
Sbjct 885 GAATGTGAAGGTGGAGAAGAAGATGTGGAATGTTATTG-TGGTTGGAGATGG-CGAGAGC 942
Query 1031 AAGACTATCGTCTCTGCTGGACTCAACT-TCATCGATGGAACACCCACGTTCGAA-ACCG 1088
|||| ||| ||||||| | |||| || | ||||||||||||| ||||| || || ||||
Sbjct 943 AAGAGTATTGTCTCTGGTAGACTTAA-TGTCATCGATGGAACTCCCACTTTT-AAGACCG 1000
Query 1089 CCACATTTGCTGTGTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAATACAG 1148
||||||| |||||||||||||| ||||| ||||| || |||||||||||||| || ||||
Sbjct 1001 CCACATTCGCTGTGTTTGGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAG 1060
Query 1149 CTGGTCCAACCAAGCATCAAGCCGTAGCTCTAATGGTAAGCGCAGA-CTTGTCTGTGTTC 1207
|||||||| |||| |||||||| || |||||||||||||||||||| || | | ||
Sbjct 1061 CTGGTCCATCCAAACATCAAGCTGTTGCTCTAATGGTAAGCGCAGATCTCA-CAGCATTT 1119
Query 1208 TACAAGT-GCACTATGGATGCTTTCCAAGACACGATGTACGCTCATGCCCAACGTCAGTT 1266
||| || |||| ||| | || | |||||||||| | |||| |||||| ||||| || ||
Sbjct 1120 TACC-GTTGCACGATGAACGCATACCAAGACACGCTTTACGTTCATGCACAACGCCAATT 1178
Query 1267 TTACCGTGATTGTGTTATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTT-- 1324
|||||||| || || ||||||| || ||||| || ||||| ||| | || ||
Sbjct 1179 CTACCGTGAATGCACCATTATCGGAACAGTAGATTTCATCTTTGGTAACTCAGC--TTCA 1236
Query 1325 GTAT-TCCAAAATTGT-GAGAT-CTTGCCTCGTCGTCCTATGGAAGGCCAGCAGAATACA 1381
|| | |||||| || | ||| || ||||| || || ||| |||| || || || |||
Sbjct 1237 GT-TCTCCAAAGCTGCCG-GATTCTC-CCTCGCCGACCAATGAAAGGACAACAAAACACA 1293
Query 1382 ATAACCGCTCAGGGCCGGAAAGATCCGAACCAA-AACACCGGAATCTCTATCCACAATTG 1440
|| || ||||| || || | ||||||||| | ||||| |||||||| || ||| |||
Sbjct 1294 ATCACGGCTCAAGGACGTACTGATCCGAAC-ATGAACACAGGAATCTCGATTCACCGTTG 1352
Query 1441 TA-CTATCAAGCCTTT-GGATAACCTAACCGATATCCAA-ACGTTCCTAGGCCGGCCTTG 1497
|| | ||| || | || | ||||||||||| | | ||||| ||||| || || ||
Sbjct 1353 TAAC-ATCTCTCCACTCGG-TGACCTAACCGATGTT-ATGACGTTTCTAGGTCGACCATG 1409
Query 1498 GAAGGACTTCTCCACAACGGTGATCATGAAGTCGTACATGGACAAATTTATCAACCCGAA 1557
|||| | ||||| || ||||| || ||| | ||||| || | ||||| ||| |||
Sbjct 1410 GAAGAATTTCTCGACGACGGTTATAATGGACTCGTATTTGCATGGTTTTATTGACCGGAA 1469
Query 1558 AGGGTGGTTACCGTGGACAGGATATGCCGCACCATACACCATCTTTTACGCCGAATACTT 1617
||| |||||||||||||| ||| || | || || | || || ||||||| || || |
Sbjct 1470 AGGCTGGTTACCGTGGACCGGAGATTCTGCGCCGGATACTATATTTTACGGTGAGTA-TA 1528
Query 1618 A-AATTCCGGGCCAGGAGCCTCGACCAAGAACCGGGTTAAGTGGAAAGGGTT-GAAGACG 1675
| ||| |||| || || || ||||| ||||| ||||||||||||| ||||| || |
Sbjct 1529 AGAATACCGGTCCTGGTGCATCGACGAAGAATAGGGTTAAGTGGAA-GGGTTTGAGGTT- 1586
Query 1676 TCTTTAACAAATAAGGAAGCAAATAAGTTTACGGTGAAACCTTTTATAGACGGC--AATA 1733
|||| | | |||||||| |||| |||||||||||||||||| || ||||| || |
Sbjct 1587 TCTT-AGTACG-AAGGAAGCGAATAGGTTTACGGTGAAACCTTTCATCGACGGTGGAAGA 1644
Query 1734 ACTGG-TTGCCGGCAACCAAAGTTCCGTTCA 1763
||| || ||||| || ||||| |||||||
Sbjct 1645 --TGGCTT-CCGGCGACGAAAGTGCCGTTCA 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5