BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487283 Length=1890 Score E Sequences producing significant alignments: (Bits) Value AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase... 2639 0.0 AT3G10710.1 | Symbols: RHS12 | root hair specific 12 | chr3:335... 459 6e-128 > AT5G04960.1 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1461907-1463969 FORWARD LENGTH=1933 Length=1933 Score = 2639 bits (1429), Expect = 0.0 Identities = 1713/1847 (93%), Gaps = 31/1847 (2%) Strand=Plus/Plus Query 25 TCACATACGAGAGGCCAGG-TAGGAGGAAATTACCAAAATGTCCTCCTATGGCAGACTTG 83 ||||| |||||||||| || |||||||||||||| |||||||||||||| |||||||| | Sbjct 42 TCACAAACGAGAGGCC-GGTTAGGAGGAAATTACAAAAATGTCCTCCTACGGCAGACTCG 100 Query 84 ACGAGCATGAGCAATCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATCGCCATTA 143 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 101 ACGAGCATGAGCAAGCGAAACTTGAGGCAAGTCGGAAGACAAAGAAGAGAATTGCCATCA 160 Query 144 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCATCGTTGGAACCACAG 203 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 161 TCGCTATATCTTCCATCGTTCTCGTCTGCATTGTCGTCGGAGCCGTCGTTGGAACCACAG 220 Query 204 CTTACGATAACGGCAAGAAATCGCCAACGGAGAGTAACGGAGAGCCAATCTCCGTCTCGG 263 || ||||||| |||||||| | || ||||||| ||||||||||||||| || ||||| | Sbjct 221 CTCGCGATAACAGCAAGAAACCACCGACGGAGAATAACGGAGAGCCAATATCAGTCTCCG 280 Query 264 TGAAAGCCGTGTGCGACGTGACATTGCACAAAGACAAATGTTTTGAGACCATTGGAACGG 323 |||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||| ||| Sbjct 281 TGAAAGCCCTGTGCGACGTGACATTGCACAAAGAAAAATGTTTCGAGACCCTTGGATCGG 340 Query 324 CTCCAAACGCGAGCC-AACTAAACCCGGAGGAGCTTTTCAAGTACGCAGTCAAAATCACC 382 ||||||||||||||| | | || ||| |||||||||||||||||||| |||||| ||||| Sbjct 341 CTCCAAACGCGAGCCGATC-AAGCCCAGAGGAGCTTTTCAAGTACGCCGTCAAAGTCACC 399 Query 383 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400 ATCACGGAGCTCTCGAAAGTTCTCGACGGATTCTCCAACGGCGAACACATGGATAACGCC 459 Query 443 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATTGGACTAGCCGTTGACCAACTCAAC 502 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 460 ACGTCAGCAGCAATGGGGGCTTGCGTGGAGCTTATCGGGCTAGCCGTTGATCAACTCAAC 519 Query 503 GAGACGATGACGTCAATGAAAGACAAAACGACGTCGCCCTTGAAGAGCGTCGACGATCTC 562 || | | |||| ||||||| ||||||||| | | |||||||| Sbjct 520 --GA--A--A---CAAT------------GACGTCGTCCTTGAAGAACTTTGACGATCTA 558 Query 563 AGGACGTGGCTTAGCTCCGTGGAAACGTACCAAGAAACATGTATGGACGCATTAGTGGAA 622 |||||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||| Sbjct 559 AGGACGTGGCTTAGCTCCGTGGGAACGTACCAAGAAACGTGTATGGATGCGTTAGTGGAA 618 Query 623 GCGAACAAACCAGGTTTGACAACTTTCGGTGAAAACCATTTGAAAAACTCGACGGAGATG 682 |||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 619 GCGAACAAACCAAGTTTAACGACTTTCGGAGAAAACCATTTGAAAAACTCGACGGAGATG 678 Query 683 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATAGCTGACACCGTTAAGTTT 742 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 679 ACTAGCAATGCGTTAGCGATCATAACGTGGCTAGGGAAAATCGCTGACACCGTTAAGTTT 738 Query 743 AGACGACGTCGGTTGATGGCTACCGGTGACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 802 ||||||||||| ||| ||| || ||| |||||||||||||||||||||||||||||||| Sbjct 739 AGACGACGTCGTTTGTTGGAGACTGGTAACGCCAAAGTCGTTGTAGCTGACTTGCCGATG 798 Query 803 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTT-AAGGAAGAAAGCGACCATCGTGGT 861 ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| Sbjct 799 ATGGAAGGTCGGAGACTTTTGGAGAGTGGTGATTTGAA-GAAGAAAGCGACTATCGTGGT 857 Query 862 GGCCAAAGACGGCTCAGGGAAGTATAGGACGATAGGTGAGGCTTTAGCGGAAGTGGAGGA 921 ||| |||||||| || ||||| ||| ||||||| |||||||||||||||||||||||||| Sbjct 858 GGCTAAAGACGGGTCGGGGAAATATCGGACGATTGGTGAGGCTTTAGCGGAAGTGGAGGA 917 Query 922 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTGGAGAATGTTAG 981 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 918 GAAGAATGAGAAACCTACGATTATATATGTGAAGAAAGGAGTTTATTTAGAGAATGTTAG 977 Query 982 GGTTGAGAAGAAGAAATGGAATGTTGTGATGGTTGGAGATGGACAGAGTAAGACTATCGT 1041 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 978 GGTTGAGAAGACGAAATGGAATGTTGTGATGGTTGGAGATGGACAAAGTAAGACTATCGT 1037 Query 1042 CTCTGCTGGACTCAACTTCATCGATGGAACACCCACGTTCGAAACCGCCACATTTGCTGT 1101 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1038 CTCTGCTGGACTCAACTTCATCGATGGAACCCCCACTTTCGAAACCGCCACATTTGCTGT 1097 Query 1102 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAATACAGCTGGTCCAACCAA 1161 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || Sbjct 1098 GTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAACACAGCTGGTCCAGCTAA 1157 Query 1162 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTGTCTGTGTTCTACAAGTGCACTAT 1221 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1158 GCATCAAGCCGTAGCTCTAATGGTAAGCGCAGACTTATCTGTGTTCTACAAGTGCACCAT 1217 Query 1222 GGATGCTTTCCAAGACACGATGTACGCTCATGCCCAACGTCAGTTTTACCGTGATTGTGT 1281 ||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 1218 GGACGCTTTCCAAGATACAATGTACGCTCATGCACAACGTCAGTTTTACCGTGATTGTGT 1277 Query 1282 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAATTGTGA 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1278 TATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTTGTATTCCAAAAGTGCGA 1337 Query 1342 GATCTTGCCTCGTCGTCCTATGGAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1401 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1338 GATCTTGCCTCGTCGTCCTATGAAAGGCCAGCAGAATACAATAACCGCTCAGGGCCGGAA 1397 Query 1402 AGATCCGAACCAAAACACCGGAATCTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1461 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1398 AGATCCGAACCAAAACACAGGAATTTCTATCCACAATTGTACTATCAAGCCTTTGGATAA 1457 Query 1462 CCTAACCGATATCCAAACGTTCCTAGGCCGGCCTTGGAAGGACTTCTCCACAACGGTGAT 1521 | |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || Sbjct 1458 CTTAACCGATATCCAAACATTCCTAGGCCGGCCTTGGAAGGATTTCTCTACAACGGTTAT 1517 Query 1522 CATGAAGTCGTACATGGACAAATTTATCAACCCGAAAGGGTGGTTACCGTGGACAGGATA 1581 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 1518 CATGAAGTCGTTCATGGACAAATTCATCAACCCGAAAGGGTGGTTACCGTGGACAGGAGA 1577 Query 1582 TGCCGCACCATACACCATCTTTTACGCCGAATACTTAAATTCCGGGCCAGGAGCCTCGAC 1641 | |||| ||| |||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1578 TACCGCGCCAGACACGATCTTTTACGCCGAGTACTTAAATTCCGGGCCAGGAGCATCGAC 1637 Query 1642 CAAGAACCGGGTTAAGTGGAAAGGGTTGAAGACGTCTTTAACAAATAAGGAAGCAAATAA 1701 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 1638 CAAGAACCGGGTTAAGTGGCAAGGGTTGAAGACGTCTTTAACAAAGAAGGAAGCAAATAA 1697 Query 1702 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCAACCAAAGTTCCGTT 1761 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1698 GTTTACGGTGAAACCTTTTATAGACGGCAATAACTGGTTGCCGGCTACCAAAGTTCCCTT 1757 Query 1762 CAAATCTGATTTTTGATATTATTTGCCGGAAAAAGGCTGGTCTGAAAATTGATGGC-TAG 1820 ||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||| | | | Sbjct 1758 CAACTCTGATTTTTGATATTTTTTGCTGGAAAA-GGCTGGTCTGAAAACTGATG-CATGG 1815 Query 1821 CTAGTCGTTCTTTAATTTGGTTTCTAACGAACATACAATATTTCCTT 1867 ||||||||||||||||||| ||| |||||||||||||| ||| |||| Sbjct 1816 CTAGTCGTTCTTTAATTTG-TTTATAACGAACATACAACATTCCCTT 1861 > AT3G10710.1 | Symbols: RHS12 | root hair specific 12 | chr3:3352289-3354237 FORWARD LENGTH=1686 Length=1686 Score = 459 bits (248), Expect = 6e-128 Identities = 712/931 (76%), Gaps = 51/931 (5%) Strand=Plus/Plus Query 857 GTGGTGGCCAAAGACGGCTCAGGGAAGTATAGGACGAT-AGGTGAGGCTTTAGC-GGAAG 914 |||||||| || || || |||||||||||||| ||||| | | | ||||||| | || | Sbjct 769 GTGGTGGCGAAGGATGGTTCAGGGAAGTATAGAACGATAAAGAG-GGCTTTA-CAAGATG 826 Query 915 TG-GAGGAGAAGAATGAGAA-ACCTACGATTATATATGTGAAGAAAGGAGTTTATTTGGA 972 || | ||||||| |||||| | |||||||||||||||||||||||||||||||| || Sbjct 827 TGCCA-GAGAAGAGTGAGAAGA-GGACGATTATATATGTGAAGAAAGGAGTTTATTTTGA 884 Query 973 GAATGTTAGGGTTGAGAAGAAGAAATGGAATGTTGT-GATGGTTGGAGATGGAC-AGAGT 1030 |||||| | ||| |||||||||| ||||||||| | | ||||||||||||| | |||| Sbjct 885 GAATGTGAAGGTGGAGAAGAAGATGTGGAATGTTATTG-TGGTTGGAGATGG-CGAGAGC 942 Query 1031 AAGACTATCGTCTCTGCTGGACTCAACT-TCATCGATGGAACACCCACGTTCGAA-ACCG 1088 |||| ||| ||||||| | |||| || | ||||||||||||| ||||| || || |||| Sbjct 943 AAGAGTATTGTCTCTGGTAGACTTAA-TGTCATCGATGGAACTCCCACTTTT-AAGACCG 1000 Query 1089 CCACATTTGCTGTGTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAATACAG 1148 ||||||| |||||||||||||| ||||| ||||| || |||||||||||||| || |||| Sbjct 1001 CCACATTCGCTGTGTTTGGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAG 1060 Query 1149 CTGGTCCAACCAAGCATCAAGCCGTAGCTCTAATGGTAAGCGCAGA-CTTGTCTGTGTTC 1207 |||||||| |||| |||||||| || |||||||||||||||||||| || | | || Sbjct 1061 CTGGTCCATCCAAACATCAAGCTGTTGCTCTAATGGTAAGCGCAGATCTCA-CAGCATTT 1119 Query 1208 TACAAGT-GCACTATGGATGCTTTCCAAGACACGATGTACGCTCATGCCCAACGTCAGTT 1266 ||| || |||| ||| | || | |||||||||| | |||| |||||| ||||| || || Sbjct 1120 TACC-GTTGCACGATGAACGCATACCAAGACACGCTTTACGTTCATGCACAACGCCAATT 1178 Query 1267 TTACCGTGATTGTGTTATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTT-- 1324 |||||||| || || ||||||| || ||||| || ||||| ||| | || || Sbjct 1179 CTACCGTGAATGCACCATTATCGGAACAGTAGATTTCATCTTTGGTAACTCAGC--TTCA 1236 Query 1325 GTAT-TCCAAAATTGT-GAGAT-CTTGCCTCGTCGTCCTATGGAAGGCCAGCAGAATACA 1381 || | |||||| || | ||| || ||||| || || ||| |||| || || || ||| Sbjct 1237 GT-TCTCCAAAGCTGCCG-GATTCTC-CCTCGCCGACCAATGAAAGGACAACAAAACACA 1293 Query 1382 ATAACCGCTCAGGGCCGGAAAGATCCGAACCAA-AACACCGGAATCTCTATCCACAATTG 1440 || || ||||| || || | ||||||||| | ||||| |||||||| || ||| ||| Sbjct 1294 ATCACGGCTCAAGGACGTACTGATCCGAAC-ATGAACACAGGAATCTCGATTCACCGTTG 1352 Query 1441 TA-CTATCAAGCCTTT-GGATAACCTAACCGATATCCAA-ACGTTCCTAGGCCGGCCTTG 1497 || | ||| || | || | ||||||||||| | | ||||| ||||| || || || Sbjct 1353 TAAC-ATCTCTCCACTCGG-TGACCTAACCGATGTT-ATGACGTTTCTAGGTCGACCATG 1409 Query 1498 GAAGGACTTCTCCACAACGGTGATCATGAAGTCGTACATGGACAAATTTATCAACCCGAA 1557 |||| | ||||| || ||||| || ||| | ||||| || | ||||| ||| ||| Sbjct 1410 GAAGAATTTCTCGACGACGGTTATAATGGACTCGTATTTGCATGGTTTTATTGACCGGAA 1469 Query 1558 AGGGTGGTTACCGTGGACAGGATATGCCGCACCATACACCATCTTTTACGCCGAATACTT 1617 ||| |||||||||||||| ||| || | || || | || || ||||||| || || | Sbjct 1470 AGGCTGGTTACCGTGGACCGGAGATTCTGCGCCGGATACTATATTTTACGGTGAGTA-TA 1528 Query 1618 A-AATTCCGGGCCAGGAGCCTCGACCAAGAACCGGGTTAAGTGGAAAGGGTT-GAAGACG 1675 | ||| |||| || || || ||||| ||||| ||||||||||||| ||||| || | Sbjct 1529 AGAATACCGGTCCTGGTGCATCGACGAAGAATAGGGTTAAGTGGAA-GGGTTTGAGGTT- 1586 Query 1676 TCTTTAACAAATAAGGAAGCAAATAAGTTTACGGTGAAACCTTTTATAGACGGC--AATA 1733 |||| | | |||||||| |||| |||||||||||||||||| || ||||| || | Sbjct 1587 TCTT-AGTACG-AAGGAAGCGAATAGGTTTACGGTGAAACCTTTCATCGACGGTGGAAGA 1644 Query 1734 ACTGG-TTGCCGGCAACCAAAGTTCCGTTCA 1763 ||| || ||||| || ||||| ||||||| Sbjct 1645 --TGGCTT-CCGGCGACGAAAGTGCCGTTCA 1672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93573815880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5