BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487289
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05000.2 | Symbols: TOC34, ATTOC34, OEP34 | translocon at th... 1561 0.0
> AT5G05000.2 | Symbols: TOC34, ATTOC34, OEP34 | translocon at
the outer envelope membrane of chloroplasts 34 | chr5:1474113-1476019
REVERSE LENGTH=1142
Length=1142
Score = 1561 bits (845), Expect = 0.0
Identities = 963/1020 (94%), Gaps = 8/1020 (1%)
Strand=Plus/Plus
Query 120 GTAAGGATTTGTGTCCATGGCAGCTTTGCAAACGCCTCGTGAATGGATCGGTATCCAGCA 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 36 GTAAGGATTTGTGTCCATGGCAGCTTTGCAAACGCTTCGTGAATGGATCGGTATCCAGCA 95
Query 180 GTTCCCACCTGCTACTCAATCTAAATTGCTCGAGATCCTTGGGAAGTTTAAAGAAGAGGA 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 96 GTTCCCACCTGCTACTCAATCTAAATTGCTCGAGATCCTTGGGAAGTATAAAGAAGAGGA 155
Query 240 TGTGAGCTCGCTAACGGTCCTTGTAATGGGCAAAGGCGGTGTTGGAAAGTCATCAACTGT 299
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 156 TGTGAGCTCGCTAACGGTCCTTGTAATGGGGAAAGGTGGTGTTGGAAAGTCATCAACTGT 215
Query 300 GAATTCAGTTATAGGCGAGAAAGCTGCTGCAGTTAGTACTTTCCAGTCTGAAGGACTGAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GAATTCAGTTATAGGCGAGAAAGCTGCTGCAGTTAGTACTTTCCAGTCTGAAGGACTGAG 275
Query 360 GCCTACCTTGGTCTCCCGCTCAAGATCGGGATTTACATTGAATATCATCGACACTCCTGG 419
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GCCTACCTTGGTCTCTCGCACAAGATCGGGATTTACATTGAATATCATCGACACTCCTGG 335
Query 420 TCTTATTGAGGGGGGATATGTGAATGATCAAGCCATCAACATTATAAAACGATTCCTCCT 479
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 336 TCTTATTGAGGGAGGATATGTGAATGATCAAGCCATCAACATTATAAAACGATTTCTCCT 395
Query 480 CAACATGACTATAGATGTGCTACTATATGTAGACCGTTTGGATGTATATAGGGTGGATGA 539
||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 396 CAACATGACTATAGATGTGCTACTATACGTAGACCGTTTGGATGTGTACCGGGTGGATGA 455
Query 540 CCTTGATAGGCAAGTTGTCAGTGCTATAACCGATGCATTTGGAAAAGAGATATGGAAAAA 599
||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||
Sbjct 456 CCTTGATAGGCAAGTTGTCGGTGCTATAACTGATGCATTTGGTAAAGAGATATGGAAGAA 515
Query 600 GTCTGCTCTTGTTCTCACACATGCTCAGTTCTCTCCGCCAGACGGGTTAAATTATAATCG 659
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 516 GTCTGCTCTTGTTCTCACCCATGCTCAGTTCTCTCCACCAGACGGGTTAAATTATAACCA 575
Query 660 CTTTGTCTCCAGAAGATCTGATGCTCTTCTAAAAGTTATCC-GTACAGGCGCCCAACTGA 718
||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||
Sbjct 576 CTTTGTCTCCAAAAGATCTAATGCTCTTCTAAAAGTTATCCAG-ACAGGCGCTCAACTGA 634
Query 719 AGAAACAGGATTTGCAGGGTTCATCTACACCCATCATTCTTGTTGAGAACAGCGGAAGAT 778
||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 635 AGAAACAGGATTTGCAGGGTTTTTCTATTCCTGTCATTCTTGTTGAGAACAGCGGAAGAT 694
Query 779 GTCATAAAAATGACAA-CGATGAAAAGATTCTTCCA-GACGGGACTAGCTGGATTCCCAA 836
| ||||| || || || ||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 695 GCCATAAGAACGA-AAGCGATGAAAAGATTCTTCCATG-CGGGACTAGTTGGATTCCCAA 752
Query 837 TCTACTCAACACAATCACAGAGATCTCTTTTAACGGCAACAAGGCGATTCACGTTGACAA 896
||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 753 TCTGTTCAACAAAATCACAGAGATCTCTTTTAATGGCAACAAGGCGATTCATGTTGACAA 812
Query 897 GAAACTGGTGGAAGGGCCAAACCCAAATC-AAAGAGGAAAGAGACTGATTCCTTTGATCT 955
||||||||| ||||||||||||||||| | |||||||||| | |||||||||||| || |
Sbjct 813 GAAACTGGTCGAAGGGCCAAACCCAAA-CGAAAGAGGAAAAAAACTGATTCCTTTAATGT 871
Query 956 TTGCATTCCAGTACTTGTTGGTGATGAAGCCATTGGTTCGAGCAATCAAGTCCGATGTTA 1015
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 872 TTGCATTCCAATACTTGCTGGTGATGAAGCCATTGGTTCGAGCAATCAAGTCCGATGTTT 931
Query 1016 CTAGAGAGAGTAAACCGGCGTGGGAGCTGCGGGACTCCGGTTTAGCAAGTCGAAGGTCTT 1075
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 932 CGAGAGAGAGTAAACCGGCGTGGGAGCTGCGAGACTCCGGTTTAGCAAGTCGAAGGTCTT 991
Query 1076 GAGTTGTTGACACGAGTTTTGTTTGGTTTGTTTGTCTATCTGAGAGATTGTTCTGTAGTT 1135
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GAGTTGTGGACACGAGTTTTGTTTGGTTTGTTTGTCTATCTGAGAGATTGTTCTGTAGTT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5