BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487292
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05030.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1784 0.0
AT5G11660.1 | Symbols: | Protein of Unknown Function (DUF239) ... 584 6e-166
> AT5G05030.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:1484177-1486065 REVERSE LENGTH=1213
Length=1213
Score = 1784 bits (966), Expect = 0.0
Identities = 1102/1167 (94%), Gaps = 11/1167 (1%)
Strand=Plus/Plus
Query 1 ACATCTCAAAA-CAACGAAATTATTAGGAAGCTTTCAAGAAAATATTGATCTGTAATCTA 59
|||||| |||| |||| |||||||| ||||||| |||||||||||||||||| ||||| |
Sbjct 1 ACATCT-AAAATCAACCAAATTATTTGGAAGCTCTCAAGAAAATATTGATCTCTAATCCA 59
Query 60 TGGATTTTGTTTTTAAACTCGTCGGATTCATCTTCATAGTTTCAATAGTTCAATCTAAAG 119
|||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 60 TGGACTTTGTTTTTAAACTCGTCGGATTCCTTTTCATAGTTTTAATAGTTCAATCTAAAG 119
Query 120 GAAATGTAAGAGATTTGATATCTGTAAAGTTAAATGAGAACACCATATATGATTGTGTGG 179
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAATGTAAAAGATTTGATGTCCGTAAAGTTAAATGAGAACACCATATATGATTGTGTGG 179
Query 180 ATATATATAAACAACCGTCGTTAAGTCATCCACTACTTAAAAATCATAAAATTCAGTTGG 239
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 180 ATATATATAAACAACCGTCGTTAAGTCATCCACTACTTCAAAATCATAAAGTTCAGCTGG 239
Query 240 AACCATCTTTCTCCATCTCCAAACCAAAAAATCAAGTTAAACGTGAAAGTGAAAGGGAAA 299
||||||| | | |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 240 AACCATC--T-T---TCTCCAAACCAAAAAATCAAGTTAAAGGTGAAAGTGAAAGAAAAA 293
Query 300 ATATCATCGAGTGTCCAAATGGAACAGTTCCTATACTGAGAAATACAAAAAGATATGTTG 359
|||||||||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||
Sbjct 294 ATATCATCGAGTGTCCTAATGGAACAGTTCCGATAATAAGAAATACAAAAAAATATGTTG 353
Query 360 CAAATGCTCAATATTGGACAGAAAAACACTTAAATCCGCTTACAGCCGATAGTCATGGGA 419
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 354 CAAATGCTCAATATTGGACAGAAAAACACTTAAATCCGCTTACAATCGATAGTCATGGGA 413
Query 420 CACATATTGCTGGAGTTAGAACAACAGATCAAGGTCCTTACCGTGGTGTGATAGCTTCGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CACATATTGCTGGAGTTAGAACAACAGATCAAGGTCCTTACCGTGGTGTGATAGCTTCGC 473
Query 480 TTAGTGTGCATGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTCACATATATATTG 539
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 474 TTAGTGTGCATGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTAATATATATATTG 533
Query 540 GCAGTGGAATCTACAATAAAGTTAATTTTATCCAAACCGGTTGGATGATAAATCCAAGTT 599
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 GCAGTGGAATCTACGACAAAGTTAATTTTATCCAAACCGGCTGGATGATAAATCCAAGTT 593
Query 600 TATTTGGTGACGGACGTGCATGGAGTTATGGGTTTTGGAAGGGAGCTAACGGAGCAGGTT 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TATTTGGTGACGGACGTACATGGAGTTATGGGTTTTGGAAGGGAGCTAACGGAGCAGGTT 653
Query 660 GTTATAATACAATATGTCGTGGTTTTGTTCAAGTATCAAAAACTGATCATTTAAGTGGGC 719
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 654 GTTATAATACAATATGTCGTGGTTTTGTTCAAGTATCAAAAACAGATCATTTAAGTGGAC 713
Query 720 CTTTACCTCAACTCCCCGCAGGAGGAGAAAGAGCTATTTCTGTTTCTATTCAACAGGACa 779
||||||||||||||||| ||||||| || |||| ||||||||||||||||| ||||||||
Sbjct 714 CTTTACCTCAACTCCCCTCAGGAGGGGACAGAGATATTTCTGTTTCTATTCGACAGGACA 773
Query 780 aaaaaaCAGGAAATTGGTGGACTACAGATATAAGAAGCAATGAACCAGATGTACATATAG 839
|| | |||||||||||||||||||||||||||||| |||||||| |||| | | ||||||
Sbjct 774 AAGAGACAGGAAATTGGTGGACTACAGATATAAGAGGCAATGAATCAGAAGAATATATAG 833
Query 840 GCTATTGGCCAAAAGAACTATTTGATCTTATTAGTAAGAGTGCAAACATAGTTGGAGTTA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GCTATTGGCCAAAAGAACTATTTGATCTTATTAGTAAGAGTGCAAACATAGTTGGAGTTA 893
Query 900 CAGGATCAGTCCAGGCTTCTCCTTCTGGTCAAAGCCCACCAATGGGTAATGGTCATTTCC 959
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 894 CAGGAACAGTCCAGGCTTCTCCTTCGGGTCAAAGCCCACCAATGGGTAATGGTCATTTAC 953
Query 960 CAACTGACGATGACGCAGGATCGGCACGTGTTGGAGAAGTTAAGTTCATAGATAATGATT 1019
||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 954 CAACTGACGATGAGGCAGGGTCGGCGCGTGTTGGAGAAGTTAAGTTTATAGATAATGATT 1013
Query 1020 TTGTGGTCAAGGGAAGTGACCAATATAAGTTAGAGAAACTT-TT-A-GACAGTAACAAAT 1076
||||||||||||||||||||||||||||||||||||||||| || | || ||||||||||
Sbjct 1014 TTGTGGTCAAGGGAAGTGACCAATATAAGTTAGAGAAACTTATTGATGATAGTAACAAAT 1073
Query 1077 GTTATGGTCTAAAAGATGGAAAGAAGTTAATTTTGTTCAAATATGGTGGACCTGGAGGAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GTTATGGTCTAAAAGATGGAAAGAAGTTAATTTTGTTCAAATATGGTGGACCTGGAGGAA 1133
Query 1137 ATTCTTGTGGGATCTAATATTTACTAA 1163
|||||||||||||||||||||| ||||
Sbjct 1134 ATTCTTGTGGGATCTAATATTTCCTAA 1160
> AT5G11660.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:3748880-3750317 FORWARD LENGTH=927
Length=927
Score = 584 bits (316), Expect = 6e-166
Identities = 618/757 (82%), Gaps = 48/757 (6%)
Strand=Plus/Plus
Query 240 AACCATCTTTCTCCATCTCCAAACCAAAAAATCAAGTTAAACGTGAAAGTGAAAGGG--A 297
|||||||||| || ||||| |||||||||| |||||||||| | ||| || |||| |
Sbjct 5 AACCATCTTTTTCGATCTCTAAACCAAAAAGTCAAGTTAAAAATAAAATTG--AGGGTAA 62
Query 298 AAATATCATCGAGTGTCCAAATGGAACAGTTCCTATACTGAGAAATACAAAAAG-ATATG 356
||| |||||||| |||||||||||||| ||||||||| | |||||||| ||||| |||||
Sbjct 63 AAAGATCATCGAATGTCCAAATGGAACGGTTCCTATATTAAGAAATAC-AAAAGAATATG 121
Query 357 TTGCAA-ATGCTCAATATTGGACAGAAAAA-CACTTAAATCCGCTTACAG-CCGATAGTC 413
| |||| | || ||||||||| ||||||| || || || |||| ||| | | || ||||
Sbjct 122 TCGCAAGA-GCCCAATATTGG-GAGAAAAAGCATTTCAACCCGCATACCGTCGGA-AGTC 178
Query 414 ATGGGACACA-TATTGCTGGAGTTAGAA-CAAC-AGATCAAGGTCCTTACCGT-GGTGTG 469
|||||||||| || ||||||||||| || | || || | | |||||||| | | ||| ||
Sbjct 179 ATGGGACACATTA-TGCTGGAGTTA-AATC-ACAAGGTGATGGTCCTTATCATGGGT-TG 234
Query 470 ATAGCTTCGCTTAGTGTGCATGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTCA- 528
||||| | ||||||||||| |||||||||||||| || ||| ||||||||||| |
Sbjct 235 GCAGCTTATATGAGTGTGCATGATTTGAATATTAGTAGGGACCAAACTTCATATGCT-AG 293
Query 529 CATATATATTGGCAGTGGA-ATCTACAATAAAGTTAATTTTATCCAAACCGGTTGGATGA 587
||| | | |||| |||||| | | |||| ||| |||||||||| |||||||||||||||
Sbjct 294 CATTTTTGTTGGTAGTGGAGA-CAACAAGAAAATTAATTTTATTCAAACCGGTTGGATGG 352
Query 588 TAAATCCAAGTTTATTTGGTGACGGACGTGCATGGAGTTATGGGTTTTGGAAGGGAGCTA 647
| |||||||||||||||||||| |||||| ||||||||| |||| |||||||||| || |
Sbjct 353 TGAATCCAAGTTTATTTGGTGATGGACGTACATGGAGTTTTGGGGTTTGGAAGGGTGCCA 412
Query 648 ACGGAGCAGGTTGTTATAATACAATATGT-CGTGGTTTTGTTCAAGTATCAAAAACTGAT 706
| ||| | ||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 413 ATGGAACTGGTTGTTATAATACAATATGTCCG-GGTTTTGTTCAAGTGTCAAAAACTGAT 471
Query 707 CATTTAAGTGGGCCTTTACCTCA-ACTCC-C-CGCAGGAGGAGAAAGAGCTATTTCTG-T 762
| |||||||| ||||| | || | ||| | | |||| |||||||||| ||| || |
Sbjct 472 CTTTTAAGTGCACCTTT-TC-CATA-TCCACACAAAGGACAAGAAAGAGCTGTTTATGCT 528
Query 763 TTCTATTCAACAGGACaaaa-aaaCAGGAAATTGGTGGACT-ACAGATATAAGA-A-GCA 818
| ||| |||||| |||| | | ||||||||||||| | || ||| ||||| | | |
Sbjct 529 AGC-ATTGTACAGGA-AAAAGATATAGGAAATTGGTGG-GTAACCGATGTAAGATATG-A 584
Query 819 -ATGAACCAGATGTACATATAGGCTATTGGCCAAAAGAACTATTTGATCTTATTAG-TAA 876
| | ||||||||| ||||| || ||||||||||||||||||||||||||||| || |||
Sbjct 585 CA-G-ACCAGATGTGCATATTGGTTATTGGCCAAAAGAACTATTTGATCTTAT-AGGTAA 641
Query 877 GAGTGCAAACATAGTTGGAGTTACAGGATCAGTCCAGGCTTCTCCTTCTGGTCA-AAGCC 935
|||| | |||| ||||||||| ||||| ||||||||||||||||||||||| | ||| |
Sbjct 642 TAGTGTAGACATGGTTGGAGTTGCAGGAGCAGTCCAGGCTTCTCCTTCTGGT-ATAAGTC 700
Query 936 CACCAATGGGTAATGGTCATTTCCCAACTGACGATGA 972
||||||||||||||||||| | |||| ||| |||||
Sbjct 701 CACCAATGGGTAATGGTCAACTACCAAGTGAAGATGA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5