BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487293 Length=415 Score E Sequences producing significant alignments: (Bits) Value AT5G05430.1 | Symbols: | RNA-binding protein | chr5:1605275-16... 699 0.0 AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 62.1 4e-09 > AT5G05430.1 | Symbols: | RNA-binding protein | chr5:1605275-1606703 REVERSE LENGTH=477 Length=477 Score = 699 bits (378), Expect = 0.0 Identities = 404/416 (97%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 1 GACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCTCTTGATGATGTCTAC 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 61 GACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCGCTTGATGATCTCTAC 120 Query 61 ACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTTA 180 Query 121 AAATTTGATGAGACTAAGACGATTCTCAACAGGTTTTGGTGGCTTCTTCCTCCTCCATTT 180 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAATTTGATGAGACTAATACGATTCTCAACAGGTTTTGGTGGCTTCTTCCTCCTCCATTT 240 Query 181 CTTTCCAATTCATCAGCTCAATCATGTAACGTGGGAGGATGGAATGTCTCTGTTGAGGCT 240 |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 241 CTTTCCAACTCATCAGCTCAA--GT-TAACGTGGGAGGATGGAATGTCTCTGTTGAGGCT 297 Query 241 TATCCGTATCCGGCAAACGCAAACGACTCAGTTACAGCTATTGTTCACGGAAAAGACGTA 300 ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| Sbjct 298 TATCCGTATCCGGCACACGCAAACGACTCAGTTAGAGCTGTTGTTCACGGAAAAGACGTA 357 Query 301 GCTGATACCGTGACTCAACTTAATGGGAGCTACATGCGAGGACGCAAATTAGCTGT-TTG 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 358 GCTGATACCGTGACTCAACTTAATGGGAGCTACATGCGAGGACGCAAATTAGCTGTATTG 417 Query 360 GGTGACTGCCAAACCGGAAATACCTATACGCCTCATTCGCCGCCGCGTCAATTTCA 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GGTGACTGCCAAACCGGAAATACCTATACGCCTCATTCGCCGCCGCGTCAATTTCA 473 > AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:869208-870855 REVERSE LENGTH=966 Length=966 Score = 62.1 bits (33), Expect = 4e-09 Identities = 71/88 (81%), Gaps = 8/88 (9%) Strand=Plus/Plus Query 19 GTTACGGGATATGACACTG-GTCTTCCTCTTGAT-GATGTCTACACGGCGT-TG-GCAGA 74 ||||||||||||||| || | |||||| ||| ||| || | | ||| | || | | | Sbjct 649 GTTACGGGATATGACGCTTCG-CTTCCTGA-GATTGATATCCAGATGGC-TCTGTGTA-A 704 Query 75 ACATTTCTCTTCATGTGGAGAGATCTGG 102 |||||||||||||||||||||||||||| Sbjct 705 ACATTTCTCTTCATGTGGAGAGATCTGG 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19654689859 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5