BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487293

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-16...   699    0.0  
  AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  62.1    4e-09


> AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-1606703 
REVERSE LENGTH=477
Length=477

 Score =  699 bits (378),  Expect = 0.0
 Identities = 404/416 (97%), Gaps = 4/416 (1%)
 Strand=Plus/Plus

Query  1    GACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCTCTTGATGATGTCTAC  60
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  61   GACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCGCTTGATGATCTCTAC  120

Query  61   ACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTTA  180

Query  121  AAATTTGATGAGACTAAGACGATTCTCAACAGGTTTTGGTGGCTTCTTCCTCCTCCATTT  180
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAATTTGATGAGACTAATACGATTCTCAACAGGTTTTGGTGGCTTCTTCCTCCTCCATTT  240

Query  181  CTTTCCAATTCATCAGCTCAATCATGTAACGTGGGAGGATGGAATGTCTCTGTTGAGGCT  240
            |||||||| ||||||||||||   | ||||||||||||||||||||||||||||||||||
Sbjct  241  CTTTCCAACTCATCAGCTCAA--GT-TAACGTGGGAGGATGGAATGTCTCTGTTGAGGCT  297

Query  241  TATCCGTATCCGGCAAACGCAAACGACTCAGTTACAGCTATTGTTCACGGAAAAGACGTA  300
            ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  298  TATCCGTATCCGGCACACGCAAACGACTCAGTTAGAGCTGTTGTTCACGGAAAAGACGTA  357

Query  301  GCTGATACCGTGACTCAACTTAATGGGAGCTACATGCGAGGACGCAAATTAGCTGT-TTG  359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  358  GCTGATACCGTGACTCAACTTAATGGGAGCTACATGCGAGGACGCAAATTAGCTGTATTG  417

Query  360  GGTGACTGCCAAACCGGAAATACCTATACGCCTCATTCGCCGCCGCGTCAATTTCA  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  GGTGACTGCCAAACCGGAAATACCTATACGCCTCATTCGCCGCCGCGTCAATTTCA  473


> AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966

 Score = 62.1 bits (33),  Expect = 4e-09
 Identities = 71/88 (81%), Gaps = 8/88 (9%)
 Strand=Plus/Plus

Query  19   GTTACGGGATATGACACTG-GTCTTCCTCTTGAT-GATGTCTACACGGCGT-TG-GCAGA  74
            ||||||||||||||| ||  | ||||||   ||| ||| || | | ||| | || | | |
Sbjct  649  GTTACGGGATATGACGCTTCG-CTTCCTGA-GATTGATATCCAGATGGC-TCTGTGTA-A  704

Query  75   ACATTTCTCTTCATGTGGAGAGATCTGG  102
            ||||||||||||||||||||||||||||
Sbjct  705  ACATTTCTCTTCATGTGGAGAGATCTGG  732



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19654689859


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5