BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487296 Length=603 Score E Sequences producing significant alignments: (Bits) Value AT5G05040.1 | Symbols: | Cystatin/monellin superfamily protein... 329 1e-89 AT5G05060.1 | Symbols: | Cystatin/monellin superfamily protein... 255 3e-67 AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:1... 145 6e-34 > AT5G05040.1 | Symbols: | Cystatin/monellin superfamily protein | chr5:1487260-1487968 REVERSE LENGTH=516 Length=516 Score = 329 bits (178), Expect = 1e-89 Identities = 186/190 (98%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 414 GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327 GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT 386 Query 474 CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACAAAACGTTA 533 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 387 CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACTAAACGTTA 446 Query 534 CCAAGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTATGCTCTTGCAAGCCTAAACC 593 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 447 CCAGGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTGTGCTCTTGCAAGCCTGAACC 506 Query 594 ATCTTCTTGA 603 |||||||||| Sbjct 507 ATCTTCTTGA 516 Score = 211 bits (114), Expect = 6e-54 Identities = 156/176 (89%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 1 ATGTTATCTCCGATTGAGAATGAGAGATCGGAACTTCCTTCCCCTAAGAAGCTGAAGTTA 60 ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| Sbjct 1 ATGTTATCTCCGATTGAGAATGAGAGATCCGAAATTCCTTCCCCTGAGAAGCTGAAGTTA 60 Query 61 G---AGGAGCCAGCCAACGATGAACCTCGGTTCCCTAATTATGATTCGGATGATTTGGAA 117 | |||||||| || |||||||| || |||| |||| ||||||||||| |||| |||| Sbjct 61 GTGGAGGAGCCATCCGACGATGAATCTAAGTTCTCTAACTATGATTCGGACGATTGGGAA 120 Query 118 ACTTTGTCAGATGATTTTCGACTGTTAGATGAAGAGTGGGGCAAGACCGGGG-TTT 172 |||||||| |||||| ||||||||||||| |||||||||||||||| ||||| ||| Sbjct 121 ACTTTGTCTGATGATCTTCGACTGTTAGACGAAGAGTGGGGCAAGAGCGGGGGTTT 176 Score = 134 bits (72), Expect = 1e-30 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 193 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCAAACATGGCTATCTCCT 252 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 251 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCCAACATGGCTATCTCCT 310 Query 253 TCTACAACGAAAAGACGG 270 |||||||||| ||||||| Sbjct 311 TCTACAACGACAAGACGG 328 > AT5G05060.1 | Symbols: | Cystatin/monellin superfamily protein | chr5:1493719-1495085 REVERSE LENGTH=976 Length=976 Score = 255 bits (138), Expect = 3e-67 Identities = 164/177 (93%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 425 TGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAATCACGCTCTACA 484 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 424 TGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAATCACACTCTACA 483 Query 485 TCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACAAAACGTTACCAAGCAGTGG 544 ||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||| Sbjct 484 TCACGTTTGAAGCCAATGACCCTTCAGATGGTAACCAGACTAAACGTTACCAAGCAGTGG 543 Query 545 TCCTCTACTTGTCCTTTGATATCCAAGTATGCTCTTGCAAGCCTAAACCATCTTCTT 601 | | |||||||||||||||||| |||| ||||||||||| ||| |||||||||||| Sbjct 544 TTCGATACTTGTCCTTTGATATCGAAGTTTGCTCTTGCAATCCTGAACCATCTTCTT 600 Score = 228 bits (123), Expect = 6e-59 Identities = 159/176 (90%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 1 ATGTTATCTCCGATTGAGAATGAGAGATCGGAACTTCCTTCCCCTAAGAAGCTGAAGTTA 60 ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| Sbjct 87 ATGTTATCTCCGATTGAGAATGAGAGATCCGAAATTCCTTCCCCTGAGAAGCTGAAGTTA 146 Query 61 ---GAGGAGCCAGCCAACGATGAACCTCGGTTCCCTAATTATGATTCGGATGATTTGGAA 117 ||||||||| || |||||||| || |||| |||||||||||||||| |||| |||| Sbjct 147 GTGGAGGAGCCATCCGACGATGAATCTAAGTTCTCTAATTATGATTCGGACGATTGGGAA 206 Query 118 ACTTTGTCAGATGATTTTCGACTGTTAGATGAAGAGTGGGGCAAGACCGGGG-TTT 172 ||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| Sbjct 207 ACTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGGGGTTT 262 Score = 130 bits (70), Expect = 2e-29 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 193 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCAAACATGGCTATCTCCT 252 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 337 GCGAGCCTCATGAGACCAACAGAGATTTGCTCAACAGGTTGTCCAACATGGCTATCTCCT 396 Query 253 TCTACAACGAAAAGACGGG 271 |||||||||| |||||||| Sbjct 397 TCTACAACGACAAGACGGG 415 > AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:10223266-10224727 REVERSE LENGTH=723 Length=723 Score = 145 bits (78), Expect = 6e-34 Identities = 109/123 (89%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 295 ATGGAAGAGATCAC-CAATGGAGTGAACAACATGAACTTGGCCGTTGATTCCCAGAAGAA 353 |||||||||||||| || ||||| ||||||||||||||||| |||||| |||||||||| Sbjct 136 ATGGAAGAGATCACGGAA-GGAGTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAA 194 Query 354 -AAGTCGTATTC-AGATTTCAAACACCAAGAAACGATTGTTCTTCTACGTCAATCTCGCC 411 || ||| |||| || |||| ||||| ||||||| ||||||||||||||||||||||||| Sbjct 195 GAA-TCGGATTCAAG-TTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCC 252 Query 412 AAG 414 ||| Sbjct 253 AAG 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29035336966 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5