BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487296
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05040.1 | Symbols: | Cystatin/monellin superfamily protein... 329 1e-89
AT5G05060.1 | Symbols: | Cystatin/monellin superfamily protein... 255 3e-67
AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:1... 145 6e-34
> AT5G05040.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:1487260-1487968 REVERSE LENGTH=516
Length=516
Score = 329 bits (178), Expect = 1e-89
Identities = 186/190 (98%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 414 GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GGATTCAAGTTTGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAAT 386
Query 474 CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACAAAACGTTA 533
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 387 CACGCTCTACATCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACTAAACGTTA 446
Query 534 CCAAGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTATGCTCTTGCAAGCCTAAACC 593
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 447 CCAGGCAGTGGTCCTCTACTTGTCCTTTGATATCCAAGTGTGCTCTTGCAAGCCTGAACC 506
Query 594 ATCTTCTTGA 603
||||||||||
Sbjct 507 ATCTTCTTGA 516
Score = 211 bits (114), Expect = 6e-54
Identities = 156/176 (89%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 1 ATGTTATCTCCGATTGAGAATGAGAGATCGGAACTTCCTTCCCCTAAGAAGCTGAAGTTA 60
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 1 ATGTTATCTCCGATTGAGAATGAGAGATCCGAAATTCCTTCCCCTGAGAAGCTGAAGTTA 60
Query 61 G---AGGAGCCAGCCAACGATGAACCTCGGTTCCCTAATTATGATTCGGATGATTTGGAA 117
| |||||||| || |||||||| || |||| |||| ||||||||||| |||| ||||
Sbjct 61 GTGGAGGAGCCATCCGACGATGAATCTAAGTTCTCTAACTATGATTCGGACGATTGGGAA 120
Query 118 ACTTTGTCAGATGATTTTCGACTGTTAGATGAAGAGTGGGGCAAGACCGGGG-TTT 172
|||||||| |||||| ||||||||||||| |||||||||||||||| ||||| |||
Sbjct 121 ACTTTGTCTGATGATCTTCGACTGTTAGACGAAGAGTGGGGCAAGAGCGGGGGTTT 176
Score = 134 bits (72), Expect = 1e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 193 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCAAACATGGCTATCTCCT 252
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 251 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCCAACATGGCTATCTCCT 310
Query 253 TCTACAACGAAAAGACGG 270
|||||||||| |||||||
Sbjct 311 TCTACAACGACAAGACGG 328
> AT5G05060.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:1493719-1495085 REVERSE LENGTH=976
Length=976
Score = 255 bits (138), Expect = 3e-67
Identities = 164/177 (93%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 425 TGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAATCACGCTCTACA 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 424 TGGAACTTGTCAAGGTTTTGAGAGCAAATTTTCACCCATCTGCTGCAATCACACTCTACA 483
Query 485 TCACGTTCGAAGCCAATGATCCTAAAGATGGTAACCAGACAAAACGTTACCAAGCAGTGG 544
||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 484 TCACGTTTGAAGCCAATGACCCTTCAGATGGTAACCAGACTAAACGTTACCAAGCAGTGG 543
Query 545 TCCTCTACTTGTCCTTTGATATCCAAGTATGCTCTTGCAAGCCTAAACCATCTTCTT 601
| | |||||||||||||||||| |||| ||||||||||| ||| ||||||||||||
Sbjct 544 TTCGATACTTGTCCTTTGATATCGAAGTTTGCTCTTGCAATCCTGAACCATCTTCTT 600
Score = 228 bits (123), Expect = 6e-59
Identities = 159/176 (90%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 1 ATGTTATCTCCGATTGAGAATGAGAGATCGGAACTTCCTTCCCCTAAGAAGCTGAAGTTA 60
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 87 ATGTTATCTCCGATTGAGAATGAGAGATCCGAAATTCCTTCCCCTGAGAAGCTGAAGTTA 146
Query 61 ---GAGGAGCCAGCCAACGATGAACCTCGGTTCCCTAATTATGATTCGGATGATTTGGAA 117
||||||||| || |||||||| || |||| |||||||||||||||| |||| ||||
Sbjct 147 GTGGAGGAGCCATCCGACGATGAATCTAAGTTCTCTAATTATGATTCGGACGATTGGGAA 206
Query 118 ACTTTGTCAGATGATTTTCGACTGTTAGATGAAGAGTGGGGCAAGACCGGGG-TTT 172
||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 207 ACTTTGTCAGATGATCTTCGACTGTTAGATGAAGAGTGGGGCAAGAGCGGGGGTTT 262
Score = 130 bits (70), Expect = 2e-29
Identities = 76/79 (96%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 193 GCGAGCCTCATGAAACCAACAGAGATTTGCTCAACAGGTTGTCAAACATGGCTATCTCCT 252
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 337 GCGAGCCTCATGAGACCAACAGAGATTTGCTCAACAGGTTGTCCAACATGGCTATCTCCT 396
Query 253 TCTACAACGAAAAGACGGG 271
|||||||||| ||||||||
Sbjct 397 TCTACAACGACAAGACGGG 415
> AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:10223266-10224727
REVERSE LENGTH=723
Length=723
Score = 145 bits (78), Expect = 6e-34
Identities = 109/123 (89%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 295 ATGGAAGAGATCAC-CAATGGAGTGAACAACATGAACTTGGCCGTTGATTCCCAGAAGAA 353
|||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 136 ATGGAAGAGATCACGGAA-GGAGTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAA 194
Query 354 -AAGTCGTATTC-AGATTTCAAACACCAAGAAACGATTGTTCTTCTACGTCAATCTCGCC 411
|| ||| |||| || |||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 195 GAA-TCGGATTCAAG-TTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCC 252
Query 412 AAG 414
|||
Sbjct 253 AAG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5