BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487299
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05080.1 | Symbols: UBC22, ATUBC22 | ubiquitin-conjugating e... 1860 0.0
> AT5G05080.1 | Symbols: UBC22, ATUBC22 | ubiquitin-conjugating
enzyme 22 | chr5:1498553-1500784 REVERSE LENGTH=1229
Length=1229
Score = 1860 bits (1007), Expect = 0.0
Identities = 1121/1173 (96%), Gaps = 20/1173 (2%)
Strand=Plus/Plus
Query 41 TCTCT-CTTTCTTCTTCTCCGATTTC-AAGTTGAATCATTACTTCGAGAGAGGTAGAGAG 98
||||| | |||||||||||||||||| | |||||||||| ||||||||||||||| |||
Sbjct 69 TCTCTCCCTTCTTCTTCTCCGATTTCGACTTTGAATCATTTCTTCGAGAGAGGTAGCGAG 128
Query 99 AAAGGGATCGCCTTTTCTCACTCTCTGCGTATTTTCAATTTTGGGCAAGAAGCCAAGAAC 158
||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 129 AAAGGGATCGCCTTTTCTCACTCTCTGCGGATTCTCAATTTTGGGCAAGAAGGCAAGAAC 188
Query 159 AG-TTTTATCGCAATTGAGTCTTGAAGACCAGTAAAGGATTTTATCACATTGGTGCTTCT 217
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 189 AGTTTTTATCGCAATTGAGTCTTGAAGACCA--CAAGGATTTGATCACATTGGTGCTTCT 246
Query 218 GCCTGTTTATCTGAGTCTGAGGACAAGAACTTCTGGGGCGTTTATAATTCT-CCATGGCT 276
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 247 GCCTGTTTATCTGAGTTTGAGGACAAGAACTTCTGGGGCGTTTATAATT-TGCCATGGCT 305
Query 277 AGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTA 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTT 365
Query 337 GACGAATCTCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATA 396
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATA 425
Query 397 TGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGAGTTTTCCGTATGAAA 456
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 426 TGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAG 485
Query 457 TTGGCTTTGTCACATGATTTTCCACATTCACCGCCTAAAGGCTACTTCATGACAAAGATT 516
||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 486 TTGGCCTTGTCACATGATTTTCCACATTCGCCTCCCAAAGGCTACTTCATGACAAAGATT 545
Query 517 TTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAGGATTGG 576
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 546 TTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAAGATTGG 605
Query 577 AACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCA 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCA 665
Query 637 TTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAG 725
Query 697 TATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCGAAGTTCAAG 756
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 726 TATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAG 785
Query 757 ACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACAAACAACGAGACG 816
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 786 ACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACG 845
Query 817 CCTAGTGCTGCTACTGCAATACCCTCTTCAGTGACAGACATAAAGAGAGTAACAACGAGT 876
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 846 CCTGGTGCTGCTACTGCAATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGT 905
Query 877 GCCCAAGACCAACAACACATGGCTAATGTCGTTGTAGCAGCCACAGCAGGATCTGCAAGT 936
|||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 906 GCCCAAGACCAACAACACGTAGCTAATGTCGTTGTAGCAGCC---------TCTGCAAGT 956
Query 937 GTGGTCACTACGACTCAGAAAAGGGAGGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAG 996
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 GTGGTCACTACGACGCAAAAAAGGGAAGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAG 1016
Query 997 AAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCTGATGTC 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1017 AAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGATGATGCTATCACTCAG-TGTC 1075
Query 1057 TTACGCTCTTCGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGA 1116
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTACGCTCTTTGAACCTAAACTGTTGTTTCCTTTTTACTTGTAAGAGATCTGTTGTTTGA 1135
Query 1117 GGATTTCTCATT-CTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTT 1175
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGATTTTTCATTTCTGGGAAATAATAATGTTTGCCAATGAAGCCGAATGTTAAACATTTT 1195
Query 1176 GGTGTTCTAATCTACATC-TGGTTTTGCTGAGT 1207
|||||||||||||||| | ||||||||||||||
Sbjct 1196 GGTGTTCTAATCTACA-CATGGTTTTGCTGAGT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5