BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487300
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding ... 1940 0.0
AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding ... 453 2e-126
AT2G40960.1 | Symbols: | Single-stranded nucleic acid binding ... 152 9e-36
> AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr5:1505122-1507224 REVERSE LENGTH=1598
Length=1598
Score = 1940 bits (1050), Expect = 0.0
Identities = 1334/1460 (91%), Gaps = 64/1460 (4%)
Strand=Plus/Plus
Query 24 gagagagagagagagagagagaTAAAGGGTCGATAAGGTC-TTTTCCGTTTCCTTGACC- 81
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 45 GAGAGAGAGAGAGAGAGAGAGATAAAGGGTCGATAAGGTCTTTTTCCGTTTCCTTGACCT 104
Query 82 CTC------TTGGATTTC------GATTTCGATTTCCTCATCTCATCGATTTGCTTCTCA 129
||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 105 CTCTGGGATTTGGATTTCGATTTGGATTTCGATTTCCTCATCTCATCGATTTGCTTCTCA 164
Query 130 ATCTCTCTAATTC-ATATCTCCTCGGGAAATTTCAATCCttttt-t-tttCTCCTTGGTG 186
||||||| ||||| || ||||||| ||||||||||||||||||| | ||| |||||||||
Sbjct 165 ATCTCTCCAATTCGAT-TCTCCTCTGGAAATTTCAATCCTTTTTATATTT-TCCTTGGTG 222
Query 187 ATTTCTAAGATAATT-A-AT-------------A---T---CGAG-AA-CATCCATCCAT 223
||||||||||||||| | || | | ||| || |||||||||||
Sbjct 223 ATTTCTAAGATAATTAAGATCGAGAAAAGGAGAATTTTGAGAGAGAAAGCATCCATCCAT 282
Query 224 CGATGGCCGCTATGAGCGAGAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTC 283
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CGATGGCCGCTATGAGCGACAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTC 342
Query 284 AGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTCGATATACAGAAGTTCTTTC 343
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 343 AGAACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTTGATATACAGAAGTTCTTTC 402
Query 344 AAAGTCCAGAGCAGCAACAATATGAGTTCCAGCCTTTGCCTACATCTTATCTTCGTCTTA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AAAGTCCAGAGCAGCAACAATATGAGTTCCAGCCTTTGCCTACATCTTATCTTCGTCTTA 462
Query 404 TTGCTCACCGTGTTGCTCAGCATTACGGGCTGTTTACAACGGCTTTAGACGGTGGTGGTG 463
||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 463 TTGCTCACCGTGTTGCTCAGCATTACGGGCTATTTACCACTGCTTTAGAAGGTGGTGGTG 522
Query 464 TTGATGGCTCAGGGAACAGAATCTTGGCGACCAAAACTGCGGAAAGTAGATACCCGTATG 523
||||||||||||||||||||||| ||||||||||||| | |||||||||||||| || |
Sbjct 523 TTGATGGCTCAGGGAACAGAATCCTGGCGACCAAAACGGTTGAAAGTAGATACCCTTACG 582
Query 524 TCTGTTTGTCTGAGATTCCTGTTAAGCAACCTGAGATTCATGGTAGGCCTGAGGGTTTCA 583
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 583 TCTGTTTGTCTGAGATTCCTGTAAAGCAACCTGAGATTCATGGTAGGCCTGAGGGTTTCA 642
Query 584 AAATCGCCATCAAGCCTAGACCTAACAGAGGATCTGGTGGGATTGGTAGTGGATCAGGAG 643
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 643 AAATCGCCATCAAGCCTAGGCCTAACAGAGGAGCTGGTGGGAGTGGTAGTGGATCAGGAG 702
Query 644 TTGAAAAGAATCTTTTGAGAAGCGTTGAGGAGAGGAAAGAAGAGTATGATAGAGCTCGGG 703
| || ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 703 TAGAGAAGAATCTTTTGAGAAGCGTTGAGGAGAGAAAAGAAGAGTATGATAAAGCTCGGG 762
Query 704 CTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTTCAACACGAGctcctc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTTCAACACGAGCTCCTC 822
Query 764 ctcctccccctcctcGTCTCGACTCAAAACATAATAATACATGTCCGAGTAGAAATGAGA 823
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 823 CTCCTCCCTATCCTCGTCTCGACTCAAAACATAATACTGCATGTCCGAGTAGAAATGAGA 882
Query 824 CCGAAGTGGTGATTAATCATATTAGTAATCCTGTTGATGTAGAGAGGAATGGTGTTATCA 883
| ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 883 CTGAAGTGGTGGTTAATTATAATAGTAATCCTGTTGATGTAGAGAGGAATGGTGTTATCA 942
Query 884 GAGACTCAGGACGGACTTCTCGGGTTGCCATTATTAGAGATAGAGAGAAGGATCGTTATG 943
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GAGACTCAGGGCGGACTTCTCGGGTTGCCATTATTAGAGATAGAGAGAAGGATCGTTATG 1002
Query 944 ATCCTGATTATGACCGTAACAGGTATGTGAGGGTTGCGCCACCGGTACAAAACTTCAATC 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 ATCCTGATTATGACCGTAACAGGTATGTGAGGGTTGCGCCACCGGTACAAAACTTCAATC 1062
Query 1004 CGATACCAATTCCGCTTCAGTTCCATGACGCAATTTTCCCACAGATGCCAAGAACTCAAG 1063
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CGATACCGATTCCGCTTCCGTTCCATGACGCAATTTTCCCACAGATGCCAAGAACTCAAG 1122
Query 1064 CCAGCATAAACTATGGACATCCCTTAAACCCAGCAATGACGGCACCTTCTTATACAGAGT 1123
||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1123 CCAGCCTAAACTATGGACACCCCTTAAACCCAGCTATGACGGCACCTTCTTATACAGAGT 1182
Query 1124 GGCCTAGTGCCACTATGACTTATGCACAAACATTGAATGCGTCAGACACACATCATTTCA 1183
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1183 GGCCTAGTGCCACTATGACTTATGCACAAACATTGAATGCGTCAGACGTACATCATTTCA 1242
Query 1184 GGCACCCGAATCCTTGACCTTTTG-TCGTGTTCAGCACAATGTCTTGTATCCAAACAGGT 1242
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1243 GGCACCCGAATCCTTGACCTTTTGGTCGTATTCAGCACAATGTCTTGTATCCAAACAGGT 1302
Query 1243 TTTATTGATGTAGCTTTAGATTTTCTGCTCTTGTTGCAAACATTGGCCACTTTTATCACA 1302
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |
Sbjct 1303 TTTATTGATGTAGCTTTAGATTTTCAGTTCTTGTTGCAAACATTGGCCTCTTTTATCGTA 1362
Query 1303 AGACAT-T--A---T------A-A-TAT-T-ATTATTATCAAGCTTTTGCAATGAAATCC 1346
|||||| | | | | | ||| | ||||||||||||||| | || |||||||
Sbjct 1363 AGACATCTCTAAGCTTTTGTTACAATATATTATTATTATCAAGCTTCTCCAC-GAAATCC 1421
Query 1347 AAAATCTGCAAGCACTAG-GTACTCTA-AATGGGTCTGCCTGTAAAGCTTATGGCCCATT 1404
||||||||||| | | || | || |||||| | |||||||||| || |||||| ||
Sbjct 1422 AAAATCTGCAAAAAAAATTGT--TGTACAATGGGCCGGCCTGTAAAGGTTGTGGCCCGTT 1479
Query 1405 TAGGGTAGATAGTTGTGGAA 1424
||| |||||||| ||||||
Sbjct 1480 TAGAGTAGATAGACGTGGAA 1499
Score = 84.2 bits (45), Expect = 3e-15
Identities = 50/52 (96%), Gaps = 1/52 (2%)
Strand=Plus/Plus
Query 1427 TTTTCTTGTTCGTATGGGTCAACATAGAAAACAGAGTCAACGTATTTCCAAA 1478
||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1529 TTTTCTTGTTCTTAT-GGTCAACATAGAAAACAGAGTCAACGTATTTCCAAA 1579
> AT3G10770.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr3:3372264-3374271 REVERSE LENGTH=1444
Length=1444
Score = 453 bits (245), Expect = 2e-126
Identities = 445/540 (82%), Gaps = 19/540 (4%)
Strand=Plus/Plus
Query 226 ATGGCCGCTATGAGCGAGAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTCAG 285
||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAGGCTCTTCAA 305
Query 286 AACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTCGATATACAGAAGTTCTTTCAA 345
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 306 AATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCAA 365
Query 346 AGTCCAGAGCAGCAACAATAT-GAGTTCCAGCCTTTGCCTACATCTTATCTTCGTCTTAT 404
| || ||||||| || | | || |||| |||||| || ||||| || || ||||||
Sbjct 366 AACCCTGAGCAGCTTCAGT-TCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGC 424
Query 405 TGCTCACCGTGTTGCTCAGCATTACGGGCT-GTTTACAACGGCTTTAGACGGTGGT---G 460
||| || || |||||||||||||| || || || || | |||||| ||| |||| |
Sbjct 425 TGCACATCGAGTTGCTCAGCATTATGGACTAGTA-ACCATGGCTTTGGACAATGGTACTG 483
Query 461 GTGTTG-A--TGGCTCAGGGAACAGAATCTTGGCGACCAAAACTGCGGAAAGTAGATACC 517
||| | | ||| || | ||||||||| | | ||| || || ||||||||||||| |
Sbjct 484 GTGCAGGAGATGGATCCGATAACAGAATCCTCGTGACGAAGACAGCGGAAAGTAGATTTC 543
Query 518 CGTATGTCTGTTTGTCTGAGATTCCTGTTAAGCAACCTGAGATTCATGGTAGGCCTGAGG 577
| |||||||| || || || || ||||| || |||||||||| ||||||| || ||||
Sbjct 544 CTTATGTCTGCTTATCCGAAATCCCTGTGAAACAACCTGAGA---ATGGTAGACCCGAGG 600
Query 578 GTTTCAAAATCGCCATCAAGCCTAGACCTAACAGAGGATCTGGT-G-GGATTGGTAGTGG 635
||||||||||||| |||||||||||||| || |||||||||||| | || ||||| ||
Sbjct 601 GTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTGGTTGTGGG--GGTAGCGG 658
Query 636 ATCAGGAGTTGAAAAGAATCTTTTGAGAAGCGTTGAGGAGAGGAAAG-AAGAGTATGATA 694
||||||||| | |||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct 659 ATCAGGAGTACAGCAGAATCTTTTGAGAAGTGTTGAGGAGAG-AAAGGAAGAGTATGATA 717
Query 695 GAGCTCGGGCTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTTCAACAC 754
|||||| ||||| ||||| || || ||||||||||| |||||||||||||||||| |||
Sbjct 718 AAGCTCGCGCTCGGATCTTTAATAGTCCTAGCAGTTCCGACTCTGAAGATTCTTCATCAC 777
> AT2G40960.1 | Symbols: | Single-stranded nucleic acid binding
R3H protein | chr2:17095522-17097454 FORWARD LENGTH=1257
Length=1257
Score = 152 bits (82), Expect = 9e-36
Identities = 166/207 (80%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 256 GTGGATCCTTTTTTGGTCGAGGCTCTTCAGAACCCTCGTCATCGTCTCACCATTTTGCGT 315
||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 176 GTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCTAACGATTTTGCGG 235
Query 316 ATGGAGCTCGATATACAGAAGTTCTTTCAAAGTCCAGAGCAGCAACAATAT-GAGTTCCA 374
||||| || ||| | |||| |||||| || || || || ||||| |||| | ||||||||
Sbjct 236 ATGGAACTTGATGTTCAGAGGTTCTTGCAGAGCCCTGATCAGCAGCAAT-TCGAGTTCCA 294
Query 375 GCCTTTGCCTACATCTTATCTTCGTCTTATTGCTCACCGTGTTGCTCAGCATTACGGGCT 434
|| ||| |||||||| || || ||| || ||||| ||||||||| | || || || ||
Sbjct 295 GCATTTCCCTACATCATACCTCCGTTTTGCGGCTCATCGTGTTGCTAATCACTATGGACT 354
Query 435 GTTTACAACGGCTTT-AGACGGTGGTG 460
||||| | | || ||| |||||||
Sbjct 355 AATTACATCAG-TTCGAGATGGTGGTG 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5