BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487302
Length=2799
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:15121... 4325 0.0
> AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:1512120-1515079
FORWARD LENGTH=2803
Length=2803
Score = 4325 bits (2342), Expect = 0.0
Identities = 2659/2810 (95%), Gaps = 30/2810 (1%)
Strand=Plus/Plus
Query 1 ACTTTCGAGCTCCTTCTTCTCTCCGTCATCGTTCCTCTCCCATCCCATGGCACAGTTTCT 60
||||||||||||||||||||||||||||||||| | || | ||||||||| ||||||||
Sbjct 13 ACTTTCGAGCTCCTTCTTCTCTCCGTCATCGTT-C-CT--C-TCCCATGGCTCAGTTTCT 67
Query 61 TCGACACTTCTCTTCCCCTCCCATGGCGAACGAAGACGAATTTCAATCTCCGGTAGAACC 120
||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 68 TCGACGCTTCTCTTCCTCTCCCATGGCGAACGAAGACGAATTCCAATCTCCGGTGGAACC 127
Query 121 AT--C-GCAGCAATCTCAGGACTGTGTTTCAGAGTCTTATTTGATAGGGTTTGTTATCGC 177
|| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 128 ATCACAGCAGCAATCTCAGGACTGTGTTTCGGAGTCTTATCTGATAGGGTTTGTTATCGC 187
Query 178 GAACATAGTAGGGTTAAAGTACTATTCCGGCCGAATCAACGGTCGAGAGATGGTAGGTCT 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 188 GAACATAGTAGGGTTAAAGTACTATTCCGGCCGAATCAACGGTCGAGAGATGGTGGGTCT 247
Query 238 GGTTCGAGAACCCTTGAACCCATATGACAATAACGCAATCAGAGTGCTCAACACACGATC 297
||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||
Sbjct 248 GGTTCGAGAACCCTTGAACGTATATGACAATAATGCAATCAGAGTACTCAACACGCGATC 307
Query 298 TGAGCAAGTGGGTCACATCGAGCGTACAGTAGCAGCCGTTCTCGCGCCGATGATTGATTC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TGAGCAAGTGGGTCACATCGAGCGTACAGTAGCAGCCGTTCTCGCGCCGATGATTGATTC 367
Query 358 TCACACGATCATCGTCGAAGGTATTGTACCCAATACTCGTTCTAACTCCAATAGGTTTAA 417
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 368 TCACACGATCGTCGTCGAGGGTATTGTACCCAATACTCGTTCTAACTCCAATAGGTACAG 427
Query 418 AATTCCTTGTCAAATTCATGTTTTTGCAAAGTTAGAAGCCTCCTCTACTGTCAAATCGAC 477
||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 428 AATCCCTTGTCAAATTCATGTATTTGCAAAGTTAGAAGCGTCCTCTACTGTGAAATCGAC 487
Query 478 GATTTCTAGAGGTGGGTTAGTGTTGATTTCGGATTCAGATACATCGTTTGGGTTATCTGA 537
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 488 GATTTCTAGAGGTGGGTTAGTATTGATTTCGGAGTCAGATACATCGTTTGGGTTATCTGA 547
Query 538 GGCTGCTGTCGTTAAGGAACAGATGGGTAATGGAGATAAGAAGAGTGTTGACAAGATTTT 597
||||| ||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 548 GGCTGTTGTGGTTAAGGAACAGATGGGAAATGGAGATAAGAGGAGTGTTGATAAGATTTT 607
Query 598 CAAA-TTGGTTGATAG-GAATGTGAAGTTAAAGGGGAAATTGGTAGCGGTTGAGCCGCCG 655
||| || |||||| | |||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 608 TAAACTT-GTTGAT-GAGAATGTGAAGTTAATGGGGAAATTGGTAGCGGCTGAGCCACCT 665
Query 656 AGGGAAGTGATAAAGTCTGAACTTTTTGCTCATCAGAAGGAAGGATTGGGCTGGTTACTC 715
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 666 AGGGAAGTGATAAAGTCTGAACTTTTTGCTCATCAGAAGGAAGGATTAGGCTGGTTACTC 725
Query 716 CACAGAGAGAAATCTGGAGAGTTGCCTCCGTTTTGGGAGGAGAAAGATGGAGAATTCTTG 775
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 726 CATAGAGAGAAATCTGGAGAATTGCCTCCGTTTTGGGAGGAGAAAGATGGAGAATTTTTG 785
Query 776 AATACTTTGACGAATTACCGCTCGGATAAGCGGCCTGAACCTTTGCGTGGAGGGGTGTTT 835
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 786 AATACTTTGACGAATTACCGCTCGGATAAGCGGCCTGATCCTTTGCGTGGAGGGGTGTTT 845
Query 836 GCTGATGATATGGGGTTGGGTAAGACCCTTACTTTGCTTTCCTTGATAGCTTTTGATAGA 895
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 846 GCTGATGATATGGGGTTGGGTAAGACCCTTACTTTGCTTTCCCTGATAGCTTTTGATAGA 905
Query 896 TATGGCAATGCATCGACGAGTACGCCAACCGAAGAACCTTTGGATGTTGAAGGAGACAAG 955
|||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 906 TATGGCAATGCATCCACCAGTACGCCAACCGAAGAGCCTTTGGATGGTGAAGGAGACAAG 965
Query 956 ATTGAAAAGAAGGGTAAAAAGAGAGGAAGAGGCAAGAGCAGTGAAAGTATAACTCGAAAG 1015
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 966 ATTGAAAAGAAGGGTAAAAAGAGAGGAAGAGGCAAGAGCAGTGAAAGTGTAACTCGAAAG 1025
Query 1016 AAGCTTAAACCTGATGATGTTGTTGGCATGAATGCGTCTCAAAAGACAACGTTGATCGTT 1075
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1026 AAGCTTAAAACTGATGATGTTGTTGGCATGAATGTGTCTCAAAAGACAACGTTGATCGTT 1085
Query 1076 TGTCCGCCTTCTGTGATTTCAGCATGGATTACGCAGTTAGAGGAGCATACTGTACAGGGA 1135
||||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 1086 TGTCCACCTTCTGTGATTTCAGCATGGATAACACAGTTAGAGGAGCATACTGTACCGGGA 1145
Query 1136 AGCTTGAAGGTGTATATGTATCATGGTGGCGAAAGGACAGACGATGTTAATGAGCTTATG 1195
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 ATCTTGAAGGTGTATATGTATCATGGTGGCGAAAGGACAGACGATGTTAATGAGCTTATG 1205
Query 1196 AAATATGATATAGTGCTGACTACTTACAGCACTTTAGCTGTTGAGGAATCGTGGGAAGAT 1255
|| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1206 AAGTATGACATAGTGTTGACTACTTACGGCACTTTAGCTGTTGAGGAATCGTGGGAAGAT 1265
Query 1256 TCTCCTGTCAAGAAGATGGAGTGGCTGAGAATAATTCTTGATGAGGCACACACCATTAAG 1315
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TCTCCTGTAAAGAAAATGGAGTGGCTGAGAATAATTCTTGATGAGGCACACACCATTAAG 1325
Query 1316 AATGCAAACGCTCAACAGAGCCGAGTAGTTAGTAAGTTAAAGGCTTCTCGCAGATGGGCT 1375
|||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 1326 AATGCAAATGCTCAACAGAGCCGAGTAGTTTGTAAGTTGAAGGCTTCCCGCAGATGGGCT 1385
Query 1376 GTCACAGGAACTCCTATTCAGAATGGTTCATTTGATTTGTACTCTTTGATGGCGTTTCTC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1386 GTCACAGGAACTCCTATTCAGAATGGTTCATTTGATTTGTACTCTTTGATGGCCTTTCTC 1445
Query 1436 CGGTTTGAGCCATTTTCGATTAAGAGTTATTGGCAAAGCTTGATACAACGCCCGCTTGGT 1495
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1446 CGGTTTGAGCCATTTTCGATTAAGAGTTATTGGCAAAGTTTGATACAACGCCCGCTTGGC 1505
Query 1496 CAAGGGAATAAAAAGGGTCTTTCACGTCTGCAGGTTTTAATGGCGACAATTTCATTAAGG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1506 CAAGGGAATAAAAAGGGTCTTTCACGTCTGCAGGTTTTAATGGCGACAATTTCGTTAAGA 1565
Query 1556 AGAACAAAAGAAAAGAGTTTGATTGGTTTACCGCCTAAGACTGTTGAAACTTGTTATGTT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 AGAACAAAAGAAAAGAGTTTGATTGGTTTACCGCCTAAGACTGTTGAAACTTGTTATGTT 1625
Query 1616 GAGCTTTCTCCAGAAGAACGTCAGTTATATGATCACATGGAAGGAGAAGCGAAAGGTGTT 1675
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 GAGCTTTCTCCGGAAGAACGTCAGTTATATGATCACATGGAAGGAGAAGCGAAAGGTGTT 1685
Query 1676 GTGCAGAATCTTATAAATAATGGAAGCTTGATGCGTAACTACTCAACAGTTTTAAGTATA 1735
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1686 GTGCAGAATCTTATAAATAATGGAAGCTTGATGCGCAACTACTCAACAGTTTTGAGTATA 1745
Query 1736 ATCTTACGGCTTAGACAACTTTGCGACGACATTTCTCTATGCCCTCCAGAATTAAGATCT 1795
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1746 ATCTTACGGCTTAGACAGCTTTGCGATGACATGTCTCTATGCCCTCCAGAATTAAGATCT 1805
Query 1796 TTTACCACTTCTACATCTGTCGAAGATGTAACAGATAAGCCAGAGCTTCTGCAAAAGCTG 1855
|||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct 1806 TTTACCACTTCTACATCTGTAGAAGATGTGACTGATAAGCCAGAGCTACTGCAAAAGCTG 1865
Query 1856 ATTGCAGTATTGCAAGATGGTGAAGATTTTGACTGTCCAATTTGCATATCACCACCAACA 1915
|||||| |||||||||||| |||||||||||||||||||| ||||| || |||||||||
Sbjct 1866 GTTGCAGCATTGCAAGATGGCGAAGATTTTGACTGTCCAATCTGCATTTCGCCACCAACA 1925
Query 1916 AACATCATCATCACTCGATGTGCTCACATCTTTTGCAGGGCTTGTATCCTTCAAACCCTT 1975
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1926 AACATCATCATCACTCGATGTGCCCACATCTTTTGCAGGGCTTGTATCCTTCAAACTCTT 1985
Query 1976 CAAAGAAGTAAACCATTGTGCCCTCTTTGCCGTGGCTCCCTTACCCAGTCGGATCTCTAC 2035
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1986 CAAAGAAGTAAACCATTGTGCCCTCTTTGCCGTGGCTCCCTTACCCAATCTGATCTCTAC 2045
Query 2036 AATGCTCCGCCGCCTCCTCCGGATGATTCCAACACCGACGGAGAAGACACCAAATCTTCA 2095
||||||||||| |||||||||||| |||||| ||||| ||||||||| | |||||||||
Sbjct 2046 AATGCTCCGCCTCCTCCTCCGGATTCTTCCAATACCGATGGAGAAGACGCTAAATCTTCA 2105
Query 2096 ACCAAATCCTCAAAGGTCTCAGCTTTACTATCACTGCTCATCGCATCGAGACAAGAAAGC 2155
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 2106 ACCAAATCCTCAAAGGTCTCAGCTTTACTATCCCTGCTCATGGCATCGAGACAAGAAAAC 2165
Query 2156 CCCAACACAAAGTCTGTTGTGTTCTCTCAATTCAGGAAGATGCTGCTTCTACTAGAAACT 2215
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2166 CCCAACACAAAGTCTGTTGTGTTCTCTCAATTCAGGAAGATGCTGCTTTTACTAGAAACT 2225
Query 2216 CCACTAAAAGCTGCGGGTTTCACCATCTTACGCTTGGATGGAGCAATGACTCTGAAGAAA 2275
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2226 CCACTAAAAGCTGCGGGTTTCACCATCTTGCGCTTGGATGGAGCAATGACTGTGAAGAAA 2285
Query 2276 CGCACCCAAGTCATTGGAGAATTTGGGAATCCGGAGTTAACCGGACCTGTGGTGTTGCTA 2335
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2286 CGGACCCAAGTCATTGGAGAATTTGGGAATCCAGAGTTAACCGGACCTGTGGTGTTGCTT 2345
Query 2336 GCGAGCCTCAAGGCCTCTGGTGCTGGAATAAACCTAACTGCAGCCTCAAGGGTTTACTTG 2395
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2346 GCGAGCCTCAAGGCCTCTGGTACTGGCATAAACCTAACTGCAGCCTCAAGGGTTTACTTG 2405
Query 2396 TTGGACCCGTGGTGGAACCCTGCAGTTGAAGAACAGGCCATGGACAGGATTCATAGGATT 2455
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2406 TTTGACCCGTGGTGGAACCCTGCAGTTGAAGAACAGGCCATGGACAGGATTCATAGGATC 2465
Query 2456 GGGCAGAAACAAGAGGTTAAAATGATAAGGATGATTGCGAGAAACAGTATCGAAGAGAGA 2515
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2466 GGGCAGAAACAAGAGGTTAAAATGATAAGGATGATTGCGAGAAACAGTATCGAAGAGAGG 2525
Query 2516 GTCCTTGAACTTCAGCagaagaagaagaatctagctaacgaagcttttaaaagaaggcaa 2575
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2526 GTCCTTGAGCTTCAGCAGAAGAAGAAGAATCTAGCAAACGAAGCTTTTAAAAGAAGGCAA 2585
Query 2576 aagaaagatgaaagagaGGTTAACGTTGAAGACGTGATTGCTCTCATGTCTCTCTGAAAC 2635
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2586 AAGAAAGATGAAAGAGAGGTTAACGTTGAAGACGTGGTTGCTCTCATGTCTCTCTGAAAC 2645
Query 2636 TCTCAATCAGTGCTTAGCTCCTTAACCGGAtttttttGTTCCCTCTAAGATTACAATAAC 2695
| ||||||| |||||||||||||||||| ||||||| ||||| ||| ||||
Sbjct 2646 TATCAATCATTGCTTAGCTCCTTAACCG--TTTTTTT---------AAGAT-ACATTAAC 2693
Query 2696 CGGTTATTTACTGCTTTTGGTACGTAACCTTAACCGATGTTTATGTTGCCTT-T-A--T- 2750
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | | |
Sbjct 2694 CGGTAATTTACTGCTTTTGGTACGTAACCTCAACCGATGTTTTTGTTGCCTTATCAAGTA 2753
Query 2751 -CAACTAGACTTCTGTCTCGGTTAGTTTAATTTAATTATGGGTTAGCTTG 2799
||||||||||||||||||| |||||||| |||||| | |||||||||||
Sbjct 2754 TCAACTAGACTTCTGTCTCGATTAGTTTAGTTTAATCAAGGGTTAGCTTG 2803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139062765996
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5