BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487310 Length=1892 Score E Sequences producing significant alignments: (Bits) Value AT5G05200.1 | Symbols: | Protein kinase superfamily protein | ... 3116 0.0 AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133)... 200 4e-50 > AT5G05200.1 | Symbols: | Protein kinase superfamily protein | chr5:1544007-1547164 REVERSE LENGTH=1904 Length=1904 Score = 3116 bits (1687), Expect = 0.0 Identities = 1811/1872 (97%), Gaps = 4/1872 (0%) Strand=Plus/Plus Query 23 AGCTTGACCGGAGTTTCTTGTCT-T-TTGCTCCAATCTCCGGCGACCGATGGCGGTCTCA 80 |||||||||||||| |||||||| | |||| ||||| ||||||| |||||||||||||| Sbjct 35 AGCTTGACCGGAGTGTCTTGTCTCTGCTGCTTCAATCGCCGGCGAACGATGGCGGTCTCA 94 Query 81 GCTTTCCGTGGCACGCGGTTACCGTTATTTCACCATTCTCAGTTTCCCGTCGCGAGAACT 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95 GCTTTCCGTGGCACGCGGTTACCGTTATTTCACCATTCTCAGTTTCCCGTCGCGAGAACT 154 Query 141 GTATCACGAACGTCTAAGAAGATGATCGGAGGCAGGAATTTGAAGGGTTTTGTTATTTCG 200 || ||| |||||||||||||||||||||||| ||||||||| |||||||||||| || | Sbjct 155 GTGTCAGGAACGTCTAAGAAGATGATCGGAGCCAGGAATTTCAAGGGTTTTGTTCTTACA 214 Query 201 GCTCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAGCCAGATAGAGAAG 260 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 215 GCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAGCCAGATAGAGAAA 274 Query 261 TTGCCCAAACTGGTTGAGGATATAGTTCAGACATCGATAAACACAGGTCCACGCGGTGTG 320 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 275 TTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGATAAACACAGGTCCACGAGGTGTG 334 Query 321 ACACGCCTTGTCCAAGGCGTTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGAT 380 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 335 ACACGCCTTGTCCAAGGTGTTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGAT 394 Query 381 TTATCTAAGTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTG 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 TTATCTAAGTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTG 454 Query 441 TCTCCTCTATATTTGAGGAAACTCTTTGAACGCATGGGAGCTACTTACATTAAGCTGGGC 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 TCTCCTCTATATTTGAGGAAACTCTTTGAACGCATGGGAGCTACTTACATTAAGCTGGGC 514 Query 501 CAGTTTATAGCATCTGCGCCAACTTTGTTCCCACCAGAATATGTCAAAGAATTTCAGAAC 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 CAGTTTATAGCATCTGCGCCAACTTTGTTCCCACCAGAATATGTCAAAGAATTTCAGAAC 574 Query 561 TGCTTTGACAAAGCTCCTCCTGTGCCGTTTGAAGAAATTCGTAAAATCTTGCAAGAGGAT 620 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 575 TGCTTTGACAAAGCTCCTCCTGTGCCATTTGAAGAAATTCGTAAAATCTTGCAAGAGGAG 634 Query 621 CTTGGGAGACCCATAGAAAGTGTATACGAATATGTTGACCCTACACCAATTGCATCAGCC 680 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 635 CTTGGGAGACCCATTGAAAGTGTATACGAATATGTTGACCCTACGCCAATTGCATCAGCC 694 Query 681 TCAATAGCACAGGTCCATGGTGCAAGGCTTAGAGGCTCCCAAGAGGATGTAGTGATTAAA 740 ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 695 TCAATAGCACAAGTCCATGGTGCAAGGCTTCGAGGCTCCCAAGAGGATGTTGTGATTAAA 754 Query 741 GTCTTGAAGCCTGGGATAGAAGATTTCTTAGTGGCAGATTTGAACTTTATCTACGTTGTT 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 GTCTTGAAGCCTGGGATAGAAGATTTCTTAGTGGCAGATTTGAACTTTATCTACGTTGTT 814 Query 801 GCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTGGTTGGTATTGTC 860 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 815 TCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTGGTTGGAATTGTC 874 Query 861 AAAGACATTCGTGAGTCAATGCTTGAGGAAGTAGATTTCAATAAGGAGGCTCAAAACATT 920 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 875 AAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCAATAAGGAGGCTCAAAACATT 934 Query 921 GAGTCATTTAAGAGATATCTTGAAACCATGGGGTTGACAGGGCAAGCTACTGCTCCAAGA 980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 935 GAGTCATTTAAGAGATATCTTGAAACCATGGGGTTGACAGGGCAAGCTACTGCTCCAAGA 994 Query 981 GTGTATAAGTACTGCAGCAGCCGGCGGGTACTTACAATGGAGAGGCTATATGGAGTTCCT 1040 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 995 GTATATAAGTACTGCAGCAGCCGGCGGGTACTTACAATGGAGAGGCTATATGGAGTTCCT 1054 Query 1041 CTGACTGATCTAGACTCTATAAGATCACTTGTTTCCAGTCCTGAAAACAGCCTTATTACT 1100 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1055 CTGACTGATCTGGACTCTATAAGATCACTTGTTTCCAGTCCCGAAAACAGCCTTATTACC 1114 Query 1101 GCGCTTAATGTGTGGTTTGGAAGTTTACTTGCTTGTGAAAGCTTCCATGCTGATGTACAT 1160 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1115 GCGCTTAATGTGTGGTTTGGAAGCTTACTTGCTTGTGAAAGCTTCCATGCTGATGTACAT 1174 Query 1161 GCAGGAAACTTATGGCTGTTGCGTGATGGGCGGATTGGGTTTCTTGATTTTGGCATTGTT 1220 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1175 GCAGGAAACTTATGGCTGTTGCGTGATGGCCGGATTGGGTTTCTTGATTTTGGCATTGTT 1234 Query 1221 GGTCGGATATCCCCCAAAACATGGGCTGCTATGGAAGTATTTTTAACGTCTATTGCAACA 1280 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1235 GGTCGGATATCCCCCAAAACATGGGCTGCTATGGAAGTATTTTTAGCGTCTATTGCAACT 1294 Query 1281 GAAGAATATGAATCCATGGCCTCAGCTTTGATTCAAATGGGCGCCACAAACAGAGATGTT 1340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295 GAAGAATATGAATCCATGGCCTCAGCTTTGATTCAAATGGGCGCCACAAACAGAGATGTT 1354 Query 1341 GATGCCAAAGCTTTTGCAAAAGACTTGGAAAAGATGTTCTCATCTATCCAGGAACTAGAT 1400 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1355 GATGGCAAAGCTTTTGCAAAAGACTTGGAAAAGATGTTCTCATCTATCCAGGAACTAGAT 1414 Query 1401 ACAGAGATAGTAGTGGCTACAGCTCGTGGAACAAATTCAGACACAACTGCTGTTGCTGCT 1460 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1415 ACAGAGATAGTAGTGGCTACAGCTCGTGGAACAAATTCAGACACTACTGCTGTTGCTGCT 1474 Query 1461 AACGTAGTTATGGATGAGAGACAGATGAATGCTCTTTTCCTCGACCTGGTGCGTGTTAGC 1520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1475 AACGTAGTTATGGATGAGAGACAGATGAATGCTCTTTTCCTCGACCTGGTGCGTGTTAGC 1534 Query 1521 GAATCATATGGGCTTAAGTTCCCGAGAGAGTTTGCACTTCTGTTGAAGCAACTTCTGTAT 1580 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1535 GAATCATATGGTCTTAAGTTCCCGAGAGAGTTTGCACTTCTGTTGAAGCAACTTCTGTAC 1594 Query 1581 TTCGATCGATACACGAGACTGTTAGCCCCAAACCTGAACATGCTGCAGGATCAGCGGATT 1640 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1595 TTCGATCGATACACAAGACTATTAGCCCCAAACCTGAACATGCTGCAGGATCAGCGGATC 1654 Query 1641 TCTATCGCGTCCAACAAGAGGACGAATCGATATAAGGACAGCTTTAACTAAGTTCATACA 1700 ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| || || Sbjct 1655 TCTATCGCGTCCAACAAGAGGACGAATGGATACAAGGACAGCTTCAACTAAGTTTATGCA 1714 Query 1701 GATATACTTCACTAAACCTATTCAAACTTTTTATTTATTTACTAGTGGTAAAGTTATAGT 1760 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1715 AATATACTTCACTAAACCTATTCAAACTTTTTATTTATTTACAAGTGGTAATGTTATAGT 1774 Query 1761 AGATTGATCAAGCCAGGAACAATGATGAATTTAATCTTGTTACAAACATATCATGACTAT 1820 ||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1775 AGATT-ATCAAGCCAAGAACGATGATGAATTCAATCTTGTTACAAACATATCATGACTAT 1833 Query 1821 ATACAACAGATGAACAATATCTTCTTCATAtttttttGTATAATTTTGCACAAGTGACAT 1880 ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||| Sbjct 1834 ATACAACAGATGAACTATATCTTCTTC-TATTTTTTTGTATAATTTTTCACAAGTGTCAT 1892 Query 1881 GGTTTCTACTTT 1892 |||||||||||| Sbjct 1893 GGTTTCTACTTT 1904 > AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133) | chr5:1541521-1544137 FORWARD LENGTH=2442 Length=2442 Score = 200 bits (108), Expect = 4e-50 Identities = 125/133 (94%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1760 TAGATTGATCAAGCCAGGAACAATGATGAATTTAATCTTGTTACAAACATATCATGACTA 1819 |||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||| Sbjct 2442 TAGATT-ATCAAGCCAAGAACGATGATGAATTCAATCTTGTTACAAACATATCATGACTA 2384 Query 1820 TATACAACAGATGAACAATATCTTCTTCATAtttttttGTATAATTTTGCACAAGTGACA 1879 |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| || Sbjct 2383 TATACAACAGATGAACTATATCTTCTTC-TATTTTTTTGTATAATTTTTCACAAGTGTCA 2325 Query 1880 TGGTTTCTACTTT 1892 ||||||||||||| Sbjct 2324 TGGTTTCTACTTT 2312 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 93674216970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5