BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487310
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05200.1 | Symbols: | Protein kinase superfamily protein | ... 3116 0.0
AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133)... 200 4e-50
> AT5G05200.1 | Symbols: | Protein kinase superfamily protein
| chr5:1544007-1547164 REVERSE LENGTH=1904
Length=1904
Score = 3116 bits (1687), Expect = 0.0
Identities = 1811/1872 (97%), Gaps = 4/1872 (0%)
Strand=Plus/Plus
Query 23 AGCTTGACCGGAGTTTCTTGTCT-T-TTGCTCCAATCTCCGGCGACCGATGGCGGTCTCA 80
|||||||||||||| |||||||| | |||| ||||| ||||||| ||||||||||||||
Sbjct 35 AGCTTGACCGGAGTGTCTTGTCTCTGCTGCTTCAATCGCCGGCGAACGATGGCGGTCTCA 94
Query 81 GCTTTCCGTGGCACGCGGTTACCGTTATTTCACCATTCTCAGTTTCCCGTCGCGAGAACT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GCTTTCCGTGGCACGCGGTTACCGTTATTTCACCATTCTCAGTTTCCCGTCGCGAGAACT 154
Query 141 GTATCACGAACGTCTAAGAAGATGATCGGAGGCAGGAATTTGAAGGGTTTTGTTATTTCG 200
|| ||| |||||||||||||||||||||||| ||||||||| |||||||||||| || |
Sbjct 155 GTGTCAGGAACGTCTAAGAAGATGATCGGAGCCAGGAATTTCAAGGGTTTTGTTCTTACA 214
Query 201 GCTCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAGCCAGATAGAGAAG 260
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GCCCAGTATTCGCAAACTCAGGACCTTTTCACTTCTCGTCTTCAAAGCCAGATAGAGAAA 274
Query 261 TTGCCCAAACTGGTTGAGGATATAGTTCAGACATCGATAAACACAGGTCCACGCGGTGTG 320
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 275 TTGCCCAAATTGGTTGAGGATATAGTTCAGACATCGATAAACACAGGTCCACGAGGTGTG 334
Query 321 ACACGCCTTGTCCAAGGCGTTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGAT 380
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 ACACGCCTTGTCCAAGGTGTTCAAGCCTTTGTAGGGGTTGGAGGAGAGTGGCTAAATGAT 394
Query 381 TTATCTAAGTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TTATCTAAGTCTACAAGCGCGTCTGGTGGATTACCAAGTGAATTGCAGCTTGGTCTACTG 454
Query 441 TCTCCTCTATATTTGAGGAAACTCTTTGAACGCATGGGAGCTACTTACATTAAGCTGGGC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TCTCCTCTATATTTGAGGAAACTCTTTGAACGCATGGGAGCTACTTACATTAAGCTGGGC 514
Query 501 CAGTTTATAGCATCTGCGCCAACTTTGTTCCCACCAGAATATGTCAAAGAATTTCAGAAC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CAGTTTATAGCATCTGCGCCAACTTTGTTCCCACCAGAATATGTCAAAGAATTTCAGAAC 574
Query 561 TGCTTTGACAAAGCTCCTCCTGTGCCGTTTGAAGAAATTCGTAAAATCTTGCAAGAGGAT 620
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 575 TGCTTTGACAAAGCTCCTCCTGTGCCATTTGAAGAAATTCGTAAAATCTTGCAAGAGGAG 634
Query 621 CTTGGGAGACCCATAGAAAGTGTATACGAATATGTTGACCCTACACCAATTGCATCAGCC 680
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 635 CTTGGGAGACCCATTGAAAGTGTATACGAATATGTTGACCCTACGCCAATTGCATCAGCC 694
Query 681 TCAATAGCACAGGTCCATGGTGCAAGGCTTAGAGGCTCCCAAGAGGATGTAGTGATTAAA 740
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 695 TCAATAGCACAAGTCCATGGTGCAAGGCTTCGAGGCTCCCAAGAGGATGTTGTGATTAAA 754
Query 741 GTCTTGAAGCCTGGGATAGAAGATTTCTTAGTGGCAGATTTGAACTTTATCTACGTTGTT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GTCTTGAAGCCTGGGATAGAAGATTTCTTAGTGGCAGATTTGAACTTTATCTACGTTGTT 814
Query 801 GCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTGGTTGGTATTGTC 860
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 815 TCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTGGTTGGAATTGTC 874
Query 861 AAAGACATTCGTGAGTCAATGCTTGAGGAAGTAGATTTCAATAAGGAGGCTCAAAACATT 920
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 875 AAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCAATAAGGAGGCTCAAAACATT 934
Query 921 GAGTCATTTAAGAGATATCTTGAAACCATGGGGTTGACAGGGCAAGCTACTGCTCCAAGA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GAGTCATTTAAGAGATATCTTGAAACCATGGGGTTGACAGGGCAAGCTACTGCTCCAAGA 994
Query 981 GTGTATAAGTACTGCAGCAGCCGGCGGGTACTTACAATGGAGAGGCTATATGGAGTTCCT 1040
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GTATATAAGTACTGCAGCAGCCGGCGGGTACTTACAATGGAGAGGCTATATGGAGTTCCT 1054
Query 1041 CTGACTGATCTAGACTCTATAAGATCACTTGTTTCCAGTCCTGAAAACAGCCTTATTACT 1100
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1055 CTGACTGATCTGGACTCTATAAGATCACTTGTTTCCAGTCCCGAAAACAGCCTTATTACC 1114
Query 1101 GCGCTTAATGTGTGGTTTGGAAGTTTACTTGCTTGTGAAAGCTTCCATGCTGATGTACAT 1160
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1115 GCGCTTAATGTGTGGTTTGGAAGCTTACTTGCTTGTGAAAGCTTCCATGCTGATGTACAT 1174
Query 1161 GCAGGAAACTTATGGCTGTTGCGTGATGGGCGGATTGGGTTTCTTGATTTTGGCATTGTT 1220
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1175 GCAGGAAACTTATGGCTGTTGCGTGATGGCCGGATTGGGTTTCTTGATTTTGGCATTGTT 1234
Query 1221 GGTCGGATATCCCCCAAAACATGGGCTGCTATGGAAGTATTTTTAACGTCTATTGCAACA 1280
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1235 GGTCGGATATCCCCCAAAACATGGGCTGCTATGGAAGTATTTTTAGCGTCTATTGCAACT 1294
Query 1281 GAAGAATATGAATCCATGGCCTCAGCTTTGATTCAAATGGGCGCCACAAACAGAGATGTT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 GAAGAATATGAATCCATGGCCTCAGCTTTGATTCAAATGGGCGCCACAAACAGAGATGTT 1354
Query 1341 GATGCCAAAGCTTTTGCAAAAGACTTGGAAAAGATGTTCTCATCTATCCAGGAACTAGAT 1400
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 GATGGCAAAGCTTTTGCAAAAGACTTGGAAAAGATGTTCTCATCTATCCAGGAACTAGAT 1414
Query 1401 ACAGAGATAGTAGTGGCTACAGCTCGTGGAACAAATTCAGACACAACTGCTGTTGCTGCT 1460
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1415 ACAGAGATAGTAGTGGCTACAGCTCGTGGAACAAATTCAGACACTACTGCTGTTGCTGCT 1474
Query 1461 AACGTAGTTATGGATGAGAGACAGATGAATGCTCTTTTCCTCGACCTGGTGCGTGTTAGC 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 AACGTAGTTATGGATGAGAGACAGATGAATGCTCTTTTCCTCGACCTGGTGCGTGTTAGC 1534
Query 1521 GAATCATATGGGCTTAAGTTCCCGAGAGAGTTTGCACTTCTGTTGAAGCAACTTCTGTAT 1580
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 GAATCATATGGTCTTAAGTTCCCGAGAGAGTTTGCACTTCTGTTGAAGCAACTTCTGTAC 1594
Query 1581 TTCGATCGATACACGAGACTGTTAGCCCCAAACCTGAACATGCTGCAGGATCAGCGGATT 1640
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1595 TTCGATCGATACACAAGACTATTAGCCCCAAACCTGAACATGCTGCAGGATCAGCGGATC 1654
Query 1641 TCTATCGCGTCCAACAAGAGGACGAATCGATATAAGGACAGCTTTAACTAAGTTCATACA 1700
||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| || ||
Sbjct 1655 TCTATCGCGTCCAACAAGAGGACGAATGGATACAAGGACAGCTTCAACTAAGTTTATGCA 1714
Query 1701 GATATACTTCACTAAACCTATTCAAACTTTTTATTTATTTACTAGTGGTAAAGTTATAGT 1760
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1715 AATATACTTCACTAAACCTATTCAAACTTTTTATTTATTTACAAGTGGTAATGTTATAGT 1774
Query 1761 AGATTGATCAAGCCAGGAACAATGATGAATTTAATCTTGTTACAAACATATCATGACTAT 1820
||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1775 AGATT-ATCAAGCCAAGAACGATGATGAATTCAATCTTGTTACAAACATATCATGACTAT 1833
Query 1821 ATACAACAGATGAACAATATCTTCTTCATAtttttttGTATAATTTTGCACAAGTGACAT 1880
||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||
Sbjct 1834 ATACAACAGATGAACTATATCTTCTTC-TATTTTTTTGTATAATTTTTCACAAGTGTCAT 1892
Query 1881 GGTTTCTACTTT 1892
||||||||||||
Sbjct 1893 GGTTTCTACTTT 1904
> AT5G05190.1 | Symbols: | Protein of unknown function (DUF3133)
| chr5:1541521-1544137 FORWARD LENGTH=2442
Length=2442
Score = 200 bits (108), Expect = 4e-50
Identities = 125/133 (94%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 1760 TAGATTGATCAAGCCAGGAACAATGATGAATTTAATCTTGTTACAAACATATCATGACTA 1819
|||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 2442 TAGATT-ATCAAGCCAAGAACGATGATGAATTCAATCTTGTTACAAACATATCATGACTA 2384
Query 1820 TATACAACAGATGAACAATATCTTCTTCATAtttttttGTATAATTTTGCACAAGTGACA 1879
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 2383 TATACAACAGATGAACTATATCTTCTTC-TATTTTTTTGTATAATTTTTCACAAGTGTCA 2325
Query 1880 TGGTTTCTACTTT 1892
|||||||||||||
Sbjct 2324 TGGTTTCTACTTT 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93674216970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5