BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487312
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05210.1 | Symbols: | Surfeit locus protein 6 | chr5:154742... 1544 0.0
> AT5G05210.1 | Symbols: | Surfeit locus protein 6 | chr5:1547423-1549791
FORWARD LENGTH=1558
Length=1558
Score = 1544 bits (836), Expect = 0.0
Identities = 940/988 (95%), Gaps = 16/988 (2%)
Strand=Plus/Plus
Query 535 TGATGATGACAGTGAGGAGGAAACAGACAACAACAGACAAAAGGATCATCAATCTGTTAC 594
||||||||||||| ||||||||||||| || ||||||||||||||| ||| |||||||||
Sbjct 575 TGATGATGACAGTAAGGAGGAAACAGATAATAACAGACAAAAGGATGATCGATCTGTTAC 634
Query 595 GTACGAAGAGCTGAGGCAACGTCTCCACCGCAAAATTGATGAGCTCAAAGGTGGTCGTGG 654
|||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 635 GTACGAAGAGCTAAGGGAACGCCTCCACCGCAAAATTGATGAGCTCAAAGGTGGTCGTGG 694
Query 655 AGGTTCAGATAGACCAAGAAGCAATGAGAGAAGGAAGAAGATTCTGCCAAATAAGAGAAA 714
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 695 AGGTTCAGATAGACCAAGAAGCAATGAAAGAAGGAAGAAGAATCTGCCAAATAAGAGAAA 754
Query 715 GAGGGATACAGTTTCTGAGGAGAAGACAGTGGAGGAAAAGAAGTCAGCAGATAAAGGTAA 774
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 755 GAGGGATACAGTTTCTGAGGAGAAGACTGTGGAGGAGATTAAGTCAGCAGATAAAGGTAA 814
Query 775 GGGTAAGTTGGATGTGGAGGAGGCTGCTAAGGACCTTACATTTGGTTACGTCAAGATTGA 834
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 815 GGGTAAGTTGGATGTGGAGGAGGCTGCTAAGGACCTTACATTTGGTTATGTCAAGATTGA 874
Query 835 TGACGATGAAGAACACGGAAAAGAGAAAAAGAAACGGAGGCTTTCAAAGGCAAAAGAACT 894
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 875 TGACGATGAAGAACACGGAAAAGAGAAAAAGAAACGAAGGCTTTCAAAGGCAAGAGAACT 934
Query 895 TGAAAGGGCTATGAAGTTAGAGGATGCAAAGAAGGATCCAGAAAAAGGAGATGTAATTGC 954
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 935 TGAAAGGGCTATGAAGTTAGAGGCTGCAAAGAAGGATCCAGAAAAAGGTGATGTAATTGC 994
Query 955 AAAGAAGCACTCATGGAAGGCAGCTACAAGCAGGGCAGCTGGTATCAAGGTTCATGATGA 1014
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 995 AAAGAAGCACTCATGGAAGGCAGCTACAAGCAGAGCAGCTGGTATCAAGGTTCATGATGA 1054
Query 1015 CCCAAAGCTATTGAAGCAAAGCATCCACAAAGACAAGAAGAGGCACGAGAAGAACGCAGA 1074
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1055 CCCAAAGCTATTGAAGCAAAGCATCCACAAAGACAAAAAGAGGCAAGAGAAGAACGCAGA 1114
Query 1075 GAAGTGGAAAGAGAGAGTTGAAGGGCAACAAAAGTTCAAGGTGGAGAAGCAGCAAAAGAG 1134
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 GAAGTGGAAAGAGAGAATTGAAGGGCAACAAAAGTTCAAGGTGGAGAAGCAGCAAAAGAG 1174
Query 1135 ATCAGGGAATATTGCCGATAGGATTGAACAAAATAAGATGCGGAAAATCGCCAAGAGAGA 1194
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1175 ATCAGGGAATATTGCCGATAGGATTGAACAGAATAAGATGCGCAAAATCGCCAAGAGAGA 1234
Query 1195 GAAAAAGCTCCTGCGTCCTGGCTTTGAAGGCCGCAAAGAAGGGTTTATCAATGAAGGTGG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 GAAAAAGCTCCTGCGTCCTGGCTTTGAAGGCCGCAAAGAAGGGTTTATCAATGAAGGTGG 1294
Query 1255 AAACTAAAATTCAAATCTTCCATACGCCTTTTGTGTTCCAACATTTCAACGATGTGATCC 1314
|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1295 AAACTAGAATTCAAGTCTTCCACACGCCTTTTGTGTTCCAACATTTCAACGATGTGATCC 1354
Query 1315 TCACAAAGGCTGTGAAGAGGGTTT--GCACATCTGAAATAGAAAAACATCTTTTACCATT 1372
|||||||||||||||||||||||| ||||||||||||| ||||||||| | ||
Sbjct 1355 TCACAAAGGCTGTGAAGAGGGTTTTTGCACATCTGAAATCGAAAAACAT-----A---TT 1406
Query 1373 TTGGGAATTTTCATCTAGTCAAGTCCCTAGCTATATCTT-TTATCTT-TTAGTTCGTTTT 1430
||||||||||||||||||||||||||||||| |||| || ||||||| || |||||||||
Sbjct 1407 TTGGGAATTTTCATCTAGTCAAGTCCCTAGCAATAT-TTGTTATCTTCTT-GTTCGTTTT 1464
Query 1431 -CTTTTGCAGTTTGTAGACTTATCAGATGTTCCATTTGCTACTCAATGTGTTGTTGCTTA 1489
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1465 ACTTT-GCAGTTTGTAGACTTTTCAGATGTTCCATTTGCTACTCAATGTGTTGTTCCTTA 1523
Query 1490 CAGTGAATGCTCTTATCAGGCAGGTTTT 1517
||||||||||||||||||||||||||||
Sbjct 1524 CAGTGAATGCTCTTATCAGGCAGGTTTT 1551
Score = 809 bits (438), Expect = 0.0
Identities = 540/587 (92%), Gaps = 16/587 (3%)
Strand=Plus/Plus
Query 1 AAACCCTAACCACTTTCACGGAACCTCctcttcttcttcgtctctctgtc----ttcttc 56
||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 1 AAACCCTAACCACTTTCACGGAA---CCTCTTCATCTTCGTCTCTCTGTCTTTTTTCTTC 57
Query 57 tctcAACGCCGTTGATTCGCCATCGTCGCTACAGGTGATTGTCTTGAGGTTTCCGACTTT 116
|||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 58 TCTCAACGCCGTTGATTCGCCATCGTCGCTAC---CGATTGTCTTGAGGTTTACGAC-TT 113
Query 117 TTGG-CTAATCTCCTCTGTGGAGAGCAATGACTAAAACTCGTGGGACTGATATGGCAAAG 175
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 114 TTGGACTAATCTCCTCTGTGGAGAGCAATGACTAAAACTCGTGGGACTGATATGACAAAG 173
Query 176 AAGAAGGGTAAACGTGATTCTGGATTGGATTTCAAGACTCATCAGCATACTGAATTTTTC 235
|| |||||||||| || ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 174 AAAAAGGGTAAACATGTTTCTGAAATGGATTTCAAGACTCATCAGCATACTGAATTTTTC 233
Query 236 GATAAGTTGATAGAGCTCATC-CCTGCAAGATTCTACTTACCTGATGAGACAGAAAGAAA 294
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||
Sbjct 234 GATAAGTTGATAGAGCTCA-CGCCTGCTAGATTCTACTTACCTGATGAGACAGAAAGGAA 292
Query 295 ATGGTTTCCAGGTCTTAGCAAGGCTCGAAAAGCTAAAGCCAAGAAAATAACAAATGAAAA 354
||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||
Sbjct 293 ATGGTATCCAGGTCTTAGCAAGGCTCAAAAAGCTAGAGCCAAGAAAAAAACAAATGACAA 352
Query 355 CCTAAAGAAGGCGAAGAGAGATAAGTTGGACCCAGAGAAGTCTGCTTTGACGACTCTTGA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 353 CCTAAAGAAGGCGAAGAGAGATAAGTTGGACCCAGAGAAGTCTGCTTTGACGACTCTCGA 412
Query 415 TTTACTGAAGGAGAAGATAGAGAAGGAAAGATTGGCTTCACTGAAGCAGAAGCAAAAGAA 474
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 413 TTTACTGAAGGAGAAGATAGAGAAGGAAAGATTGGCTTCACAGAAGCAGAAGCTTAAGAA 472
Query 475 GAAACACGCGGATTTACGGAAGCAGAAGTTTGACC-GGCAAAACTCTGGTACTGAGCTTC 533
||||||||||||||||||| |||||||| | || | || |||| || |||||||||||||
Sbjct 473 GAAACACGCGGATTTACGGGAGCAGAAGCTAGAGCAGGAAAAA-TCAGGTACTGAGCTTC 531
Query 534 CTGATGATGACAGTGAGGAGGAAACAGACAACAACAGACAAAAGGAT 580
|||||||||||||| || |||||||||| |||||||||| ||| |||
Sbjct 532 CTGATGATGACAGTAAGAAGGAAACAGATAACAACAGACTAAATGAT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5