BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487314
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05230.1 | Symbols: | RING/U-box superfamily protein | chr5... 2001 0.0
> AT5G05230.1 | Symbols: | RING/U-box superfamily protein | chr5:1551388-1553805
FORWARD LENGTH=1559
Length=1559
Score = 2001 bits (1083), Expect = 0.0
Identities = 1288/1384 (93%), Gaps = 26/1384 (2%)
Strand=Plus/Plus
Query 22 ATCACTCATCTCTCTTCTTCAAA-ATTCCTTCTTTGTTTCACAAAACTAAACCAAACCCT 80
||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| ||||||
Sbjct 64 ATCACTCATCTCTCTTCTT-AAAGATTCCTTCTTTGCTTCACGAAACTAAACCGAACCCT 122
Query 81 GAttttagc-ttctta-attgcttaattatcttcaatttttgtttaattttta-ggtttt 137
|| ||| | |||||| | |||| |||||||||||||||| |||||||| ||| || |||
Sbjct 123 GA-TTTCCCTTTCTTACA-TGCTCAATTATCTTCAATTTTCGTTTAATTCTTAGGGGTTT 180
Query 138 taatcattttCGATCGTTTGATTCCATCATTCCATGGCCGG-AAAAGTGCTATCTTCGGC 196
|| |||||||||||| | || || |||||||| |||| ||| || |||||| ||||
Sbjct 181 TAGTCATTTTCGATC----G-TT-CA--ATTCCATGTCCGGCAAAGGT-CTATCTCCGGC 231
Query 197 GCCTTTCAACGCGCCGCCGATGATTGTCCAAGATGCTGACCCGTTACGTTTTCGGGTCGG 256
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GCCGTTCAACGCGCAGCCGATGATTGTCCAAGATGCTGACCCGTTACGTTTTCGGGTCGG 291
Query 257 CGAACAAGACCCTTAAACCCGTGAATTCGCTGCTTTTATCGGCGACCACCACCGGTATTT 316
|||||| || ||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 292 CGAACAGGATCCTAAAACCCGTGAATTCGCTGCCTTTATCGGCG---ACCACCGGTATTT 348
Query 317 CGCGGCGGCAGCAGCAGCAGCCGCCGCCGCAGCTAATCCACACCCTCATCTAGAATTCCG 376
| ||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 349 --C-GCGGCAGCAGCAGCAGCAGCCGCCGCAGCTAATCCACATCCTCATCTCGAGTTCCG 405
Query 377 TCAGAATTTCTACTCGGAGGAACCCATTATCGGAAACCCTAACGACAGTGGTGGGTCCGA 436
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 406 TCAGAATTTCTACTCGGAGAAACCCATTATCGGAAACCCTAACGACAGTGGTGGATCCGA 465
Query 437 TGGCGAGGATGACATTGACGTGGAAGAAGAAGACGAGGATGATGACATAGACGGAAATGA 496
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 466 CGGCGAGGATGACGTTGACGTGGAAGAAGAAGACGAGGATGATGACTTAGACGGAAACGA 525
Query 497 AGGTGACATCGGCATGACCAAAGAAGCTGGTGAAGATTCTGTATCTGCAGGAGCTGTGAT 556
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 526 AGGTGACATCGGCATGAACAAAGACGCTGGTGAAGATTCTGTATCTGCAGGAGCTGTGAT 585
Query 557 AGTGGTTGGACAAGACAACGCAGCTTACTACTCACAGCATTTTAAGACAATGGAAACGAC 616
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||
Sbjct 586 AGTGGTTGGACAAGACAACGCAGCTTACTATTCCCAGCATTTTAAGACAGTGGAAGCGAG 645
Query 617 TTTTGCTTCTAGGAATGAGGAATCATCTATCGCTGTGGATAATGGGTGTGATTTCAGCGG 676
||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 646 TTTTGTTTCTAGGAATGAGGAATCATCAATCGCTGCGGATAATGGGTGTGATTTCAGTGG 705
Query 677 CAGAAGAGACCCTTCTTCTTCTTCGAGCAATTCAATCGAGTCCTTGAGGACCATTTTGTC 736
||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 706 CAGAAGAGACCTTTCTTCTTCTTCGAGCAATTCGATCGAGTCATTGAGAACCATTTTGTC 765
Query 737 TGATCCTACAACAGGGTCTTTGATGGCTGATGCTATGATTTTACCTTGAGGACACACTTT 796
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 766 TGATCCTACAACAGGCTCTTTGATGGCTGATGCTATGATTTTACCTTGCGGACACACTTT 825
Query 797 TGGAGCTGGAGGAATTGAACAAGTTAAACAGATGAAGGCTTGCTGCACATGTTCACAACC 856
|||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 826 TGGAGCTGGAGGGATAGAACAAGTTAAACAGATGAAAGCTTGTTGCACATGTTCACAACC 885
Query 857 AGTCTCAGAAGAGTCAATAACCCCAAATCTCACTTTACGAGTTGCGGTACAAGCATTCTG 916
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGTCTCAGAAGACTCGATAACCCCAAATCTCACTTTACGAGTTGCGGTACAAGCATTCTG 945
Query 917 CCGAGAAGAGAATTCACAGTCAAACCATTCATCGAAGAGAAAACGAGAAGGATCTGATCA 976
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||
Sbjct 946 CCGAGAAGAGAATTCACAGTCAAACCATCCATCTAAGAGAAAACGAGAAGGATTTGATCA 1005
Query 977 AGAGAGACGTGCATTTGGTGTCAAGAATCATTCAGGTCGATCAAGGAACAAAAGTAATCA 1036
||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||| ||
Sbjct 1006 AGAGAGACGCGCATTTGGTGTCACGAATCATTCAGGTCGTTCAAGAAACAAAAGTAACCA 1065
Query 1037 TTTCCCATTTGCTGTGGCAGATCGAGTTATAATAAAGGGAAATAAGAGGACACCACCTCG 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TTTCCCATTTGCTGTGGCAGATCGAGTTATAATAAAGGGAAATAAGAGGACACCACCTCG 1125
Query 1097 TTTTGTTGGCCGGGAAGCTGTTGTGACTACTCAATGCTTAAACGGCTGGTATGTGGTGAA 1156
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1126 TTTTGTTGGCCGGGAAGCTGTTGTGACTACTCAATGCTTAAATGGCTGGTATGTGGTGAA 1185
Query 1157 AACACTGGACAACGCAGAGAGTGTGAAGCTTCAGTATCGTTCATTGGCTAAAGCTCCAGA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AACACTGGACAACGCAGAGAGTGTGAAGCTTCAGTATCGTTCATTGGCTAAAGCTCCAGA 1245
Query 1217 AGATCCATCAGCCAAAGCAACACCAAACAAGATGGTCTCTAACTGGCTCTAAACAAAGCA 1276
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1246 AGATCCATCAGCTAAAGCAACACCAAACAAGATGGTCTCTAACTGGCTCTAAACAAACCA 1305
Query 1277 ACCTTGTTTTCAGCATGATGACACCAGTTTCTGCTCCTAGGTTCTCTATGTAAGATCC-A 1335
||||||||| || ||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 1306 ACCTTGTTTACAACATGATGACACCAGTTTCTGCTCCTAGGTTCGCTATGTAAGAACCCA 1365
Query 1336 AAAA--CTTATTTACAGATCCAGATCACTGTTACATATTGTAAATTGTAGTAGTTACTCC 1393
|||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1366 AAAAAACTTGTCTACAGATCCAGATCACTGTTACATATTGTAAAATGTAGTAGTTACTCC 1425
Query 1394 ATGT 1397
||||
Sbjct 1426 ATGT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5