BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487324
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05310.3 | Symbols: | TLC ATP/ADP transporter | chr5:157127... 2342 0.0
> AT5G05310.3 | Symbols: | TLC ATP/ADP transporter | chr5:1571271-1574579
FORWARD LENGTH=1657
Length=1657
Score = 2342 bits (1268), Expect = 0.0
Identities = 1414/1484 (95%), Gaps = 11/1484 (1%)
Strand=Plus/Plus
Query 67 ATGGCAGGCAGAATTCGATTAGATGCGGTTATCTCCACGATAGTAACGGTGCACCCGCAC 126
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCCAGAATTCGATTAGATGCGGTAATATCCACGATAGTAACGGTGCACCCGCAC 60
Query 127 GAGATTCCGGCGTTGCTACACTCATCTTCCTGCTTCTTCTTCGTATTGAGTGCGTATTTC 186
||| ||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 61 GAGCTTCCGGCGTTGCTCCACTCCTCTTCCTGCTTCTTCTTCATATTGAGCGCGTATTTC 120
Query 187 GTAGTTCTTCCACTCCGCGATGAAGGAGCAATATCGCTGGGATTATCAAAGCTCCCAGGC 246
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GTAGTTCTTCCACTCCGCGACGAAGGAGCAATATCGCTGGGATTATCAAAGCTACCAGGC 180
Query 247 CTTTTCGTCGGATCCTTATTTCTCACTCTCATTGCTGCTCCTCTTTCCACCTTCATCTTC 306
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTTCGTTGGATCATTGTTTCTCACTCTCATTGCTGCTCCTCTTTCCACCTTCATCTTC 240
Query 307 TCTTTGCCCAATTTGTCCAAATCCAAGGCTTTGGTTATAATACATAGATTCTTTAGTCTA 366
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCTTTGCCCAATTTGTCCAAATCCAAGGCTTTGGTTATAATTCATAGATTCTTTAGTCTA 300
Query 367 TCACTTGTTCTATGTTTCCTTCTTTGGATGGCCTCCCCAACAGAGTCTACTTCAAAGGAT 426
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 301 TCACTTGTTCTATGTTTCCTTCTTTGGATGGCCTCCCCGACAGAGTCTAATTCAAAGGAT 360
Query 427 GCAGTTGAAGCGGCATCCAGCCTAACAAAAGTTGGTATCGA-TGGAGCTAATGGATGGGA 485
|||||||| ||||| ||| |||| ||||| | ||| | | | || |||| |||||||||
Sbjct 361 GCAGTTGAGGCGGCTTCCGGCCTTACAAATGATGG-AGCTAATGCTGCTACTGGATGGGA 419
Query 486 CAACCATGGCTGGTTTTACATTTCTGTTCGAGTTGGATTTTTCCTTTGGGTTGCGTTGCT 545
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 420 CAACCATGGCTGGTTTTACATTTCTGTCCGGGTTGGATTTTTCCTTTGGGTTGCGTTGCT 479
Query 546 TAATCTTGTCGCTATTTCTTCAACGTGGGCTAGAATAATAGACGTTATGGATAGTGAGTC 605
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 480 TAATCTTGTCGCTATTTCTTCAACGTGGGCTAGAATAATAGACGTTATGGATATTCAGTC 539
Query 606 AGGTGCAAGATTGTTTGGTTTTGTTGGTGCTGGTGCTACCCTTGGACAGCTTTTTGGATC 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGTGCAAGATTGTTTGGTTTTGTTGGTGCTGGTGCTACCCTTGGACAGCTTTTTGGATC 599
Query 666 AGTATTTGCTGCTGCCACTGCTTGGATGGGTCCATATCTACTTCTATTTGCTGCTCTTTT 725
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 TGTATTTGCTGCTGCCACTGCTTGGATGGGTCCATATTTACTTCTATTTGCTGCTCTTTT 659
Query 726 GATGGAATTTGCTGCACAGGCTTCAAAAGGGATCACCAATGATATTTCCCAGTCCTCTGA 785
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GATGGAATTTGCTGCACAGTCTTCAAAAGGGATCACTAATGATATTTCCCAGTCCTCTGA 719
Query 786 GGAGTTGTCTCCTCTAAGGGGAACTGATAATGATCATCAACGTGAGAGAAAACAGGAAGC 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GGAGTTGTCTCCTCTAAGGGGAACTGATAATGATCATCAACGTGAGAGAAAACAGGAGGC 779
Query 846 TACTTCTCCAAAAGTTGGTTCTCCAAAAGTTGCTTCTCCTAAATCGCCTATCTCCACAAC 905
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 780 TACTTCTCCAAAAGTTGGTTCTCCAAAAGTTGCTTCTCCTAAATCGCCCATCTCCACAAC 839
Query 906 CAGACCTCAGCTTTGGGCCATCTTCGATGGCATGAGACTTATACTAGCATCGCCTTATCT 965
|||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 840 CAGACCTCAGTTTTGGGCCATCTTAGATGGAATGAGACTTATACTAGCATCACCTTATCT 899
Query 966 TTTGCTAGTGTCTTTGTTCCTCTGGCTCGGTGCGGTCATCTCCTCATTCTTCTATTTCCA 1025
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTGCTCGTGTCTTTGTTTCTTTGGCTCGGTGCGGTCATCTCCTCATTCTTCTATTTCCA 959
Query 1026 AAAAGTGAATATAATTGCCACGACAATCAAATCATCCATTGGTCGAAGAAGACTGTTTGC 1085
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAAAGTGAATATAATTGCTACGACAATCAAATCATCCATTGGTCGAAGAAGACTGTTTGC 1019
Query 1086 CCAGATAAATAGCTTCGTTGCAGTTTTCATACTCATTGGACAACTGACTTTAACGGTATG 1145
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 CCAGATAAACAGCTTTGTTGCAGTTTTCATACTCATTGGACAACTGACTTTAACGG---G 1076
Query 1146 TCATATGCGAATCTTGACTGTAGCTGGTGTCACGGTTGCAATATCTGCATCTCCATTTGT 1205
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ------GCGTATCTTGACTGTAGCTGGTGTCACGGTTGCAATATCTGCATCTCCATTTGT 1130
Query 1206 TGCACTTGGGAATTTGGTTGCTATTGCCATATGGCCAACTTGGGTTACAGTTGCTGTATC 1265
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1131 TGCACTTGGGAATTTGGTTGCTATTGCCATATGGCCAACTTGGGTTACGGTTGCTGTGTC 1190
Query 1266 TGAAACCTTGAGAAAGGTGACAACTTATGTTGTAACTAGACCTGGAAGGGAACTCTTGTT 1325
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGAAACCCTGAGAAAGGTGACAACTTATGTTGTAACTAGACCTGGAAGGGAACTCTTGTT 1250
Query 1326 CACAGTTGTCTCGCAAGACGAGAAATACAAAGCTAAGGTATGCATAGATGTGATTGTTCA 1385
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1251 CACCGTTGTCTCGCAAGACGAGAAATACAAAGCTAAGGTATGCATAGATGTAATTGTTCA 1310
Query 1386 ACGGCTTGGAGATGCTGCAGCGGCGGGACTATTTGAAGTCCTGACCATTGCTCTTGGCGG 1445
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1311 ACGGCTTGGAGATGCTGCAGCGGCGGGACTATTTGAAGTCCTTACCATTGCTCTTGGCGG 1370
Query 1446 TCAAACATCAACTGCTTCACTCTATGCCTTGCCAGTGTGTTTAATATGGATAGTCACGGC 1505
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1371 TCAAACGTCAACTGCTTCACTCTATGCCCTGCCAGTGTGTTTAATATGGATAGTCACAGC 1430
Query 1506 ATTCTTCTTGGGACGGCGACAAGAACAATTGGCGAAACTCCAGG 1549
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1431 GTTCTTCTTGGGCCGGCGACAAGAACAATTGGCGAAACTCCAGG 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5