BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487328
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05350.1 | Symbols: | PLAC8 family protein | chr5:1585297-1... 2702 0.0
> AT5G05350.1 | Symbols: | PLAC8 family protein | chr5:1585297-1587517
FORWARD LENGTH=2221
Length=2221
Score = 2702 bits (1463), Expect = 0.0
Identities = 1773/1914 (93%), Gaps = 55/1914 (3%)
Strand=Plus/Plus
Query 85 AGTGTAATTCTCCACTG-AATTCAACTTTAGTTCGTCTCTTTCCTTCTGGGTTTCTC--- 140
||||||||||||| ||| |||||| | |||||||||||||||| |||||||||||||
Sbjct 147 AGTGTAATTCTCCTCTGAAATTCAGCCTTAGTTCGTCTCTTTCGTTCTGGGTTTCTCTGT 206
Query 141 -----T-G--CAATTCCAATTCTGGGCATGTAATTCGAAGATTTTTCAATCTTCTTTTGT 192
| | |||||||||| ||||||||||| ||| ||| | |||| ||||||||||||
Sbjct 207 AATTGTAGCCCAATTCCAATCCTGGGCATGTATTTCAAAG-TGTTTCCATCTTCTTTTGT 265
Query 193 CAAAGTTGAAGACTTTGTTCGTTTTGAATCCGTCCGCTAGTAGAATCTTCTTCTTTGAAT 252
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CAAAGTTGAAGACTTTGCTCGTTTTGAATCCGTCCGCTAGTAGAATCTTCTTCTTTGAAT 325
Query 253 CG-CTTTCATATCTCTGCTTTACGGGTTTTCACACTTTTGCCAGCAATGTCTAAGCTTCC 311
|| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 326 CGATTTTGATATCTCTGCTTTATGGGTTTCCACACTTTTGCCAGCAATGTCTAAGCTTCC 385
Query 312 AAGCACATGCCTTTGACTA-ACTTTTCCCGGTAAAG-GATTTGCTTTTACTTCTTTTTTC 369
||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 386 AAGAACATGCCTTTGACTAGA-TTTTCCCGGTAAAGCTTTTTGCTTTTACTTCTTTTTTC 444
Query 370 CTGGCACGAG-AA--AATGGGCTCAACTGATGAGGTTGAGAAATCTAAGACTAGGGTTTC 426
|||||||||| || |||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 445 CTGGCACGAGAAATTAATGGGTTCAGTTGATGAGGTTGAGATATCTAAGACTAGGGTTTC 504
Query 427 ATGTCCTCCTGCTCTCTCAACATCTCATAAGATTCTTATCAGTGAAGAGAAACCTAGGAG 486
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 505 ATGTCCTCCTGCTCTCTCAACATCTCATAAGATTCTCATCAGTGAAGAGAAACCTAGGAG 564
Query 487 ATGGTCGGAGAGTTCGTTGCCTGATGTCTCTAATAGGATTAAGCTTTTGAAATTTGGTTC 546
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 ATGGTCCGAGAGTTCGTTGCCTGATGTCTCTAATAGGATTAAGCTTTTGAAATTTGGTTC 624
Query 547 CGCTTCTGCTAGATTCAAGAGAATGGCAGAGGAAAGAGATGAGGTTTCACGCTCTGTTAA 606
| ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 625 CCCTTCTGCTAGACTCAAGAGAATGGCTGAGGAAAGAGATGAAGTTTCACGCTCTGTCAA 684
Query 607 CAGCTCAAGCAGCCACAATTTCCAGGAAAGAATCAGTGTGGTGTTTTCCCGGAAAATTGA 666
|||||| | || | | | ||| | | | |||||||| |||||||||||| ||
Sbjct 685 CAGCTC-A--AG-CTC---TAGCAGCCACG----A-TGTGGTGTCTTCCCGGAAAATCGA 732
Query 667 GTGAGCTTGCTTGATGAAAATGGGTAAGCAATGGCTACAAAACCCGTTGAACATGGTTCT 726
||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 733 GTGGGCTTGTTTGATGAAAATGGGTAAGCAATGGCTACAGAACCCGTTGAACATGGTTAT 792
Query 727 -TTTCTTGTGGATAC-TTGTGGTTGCTGTCTCTGGTGCGATTCTGTTCATGGTTATGACC 784
||| |||||||| | |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 793 GTTT-TTGTGGAT-CTTTGTGGTTGCTGTCTCCGGTGCGATTCTATTCATGGTTATGACT 850
Query 785 GGCATGTTGAACCATGCTTTGCCCAAGAAATCACAGAGAGATGTTTGGTTTGAAGTTAAC 844
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 851 GGTATGTTGAACCATGCTTTGCCCAAGAAATCACAGAGAGATGTCTGGTTTGAAGTTAAC 910
Query 845 AATCAAATCCTCAACGCTA-TGTTTACTCTCATGTGTTTGTATCAACACCCGAAACGGTT 903
|| |||||||||||||| | |||||||||| |||||| ||||||||||||||||||||||
Sbjct 911 AACCAAATCCTCAACGC-ATTGTTTACTCTGATGTGTCTGTATCAACACCCGAAACGGTT 969
Query 904 TTACCACCTTGTGCTTCTCTGTAGATGGAGGCAAGACGATGTTACAACGCTTAGGAAGAT 963
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 970 TTACCACCTTGTGCTTCTCTGTAGATGGAAGCAAGACGATGTTACAACGCTTAGGAAGAT 1029
Query 964 -TTACTGCGAGAACGGGACTTACAAGCCAAACGAATGGATCCACATGATGGTTGTTGTTC 1022
|| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1030 ATT-CTGCAAGAACGGGACTTACAAGCCAAACGAATGGATACACATGATGGTTGTTGTTC 1088
Query 1023 TTTTGCTTCACTTGAACTGTTTTGCTCAGTATGCGCTTTGCGGTCTTAACTTAGGCTATA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TTTTGCTTCACTTGAACTGTTTTGCTCAGTATGCGCTTTGCGGTCTTAACTTAGGCTATA 1148
Query 1083 GAAGATCCGAGAGACCTGCAATTGGTGTAGCTATATGTATATCTATTGCAATAGCAGCTC 1142
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1149 GAAGATCCGAGAGACCTGCCATTGGTGTAGCTATATGTATATCTTTTGCAATAGCAGCTC 1208
Query 1143 CTGCGAG-TGCGGGTTTGTACACTATTCTTAGTCCACTTGGGAAAGATTATGATCCTCAA 1201
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CTACG-GCTGCGGGTTTGTACACTATTCTTAGTCCACTTGGGAAAGATTATGATCCTCAA 1267
Query 1202 GGAGATGAGGAGAATCAAGTGGAGCCTGTGGAAGAAGGATCCG-TTACTAATCACAAGTT 1260
||||||||||||||||||||| || |||||| ||||||| ||| ||| ||||| ||||||
Sbjct 1268 GGAGATGAGGAGAATCAAGTGCAGGCTGTGGGAGAAGGA-CCGGTTAGTAATCGCAAGTT 1326
Query 1261 ATCTCTTGAAAGGAGATATTCATTTGCTTCTGCA-GATGTGAGTAATCCTGAATGGAGAG 1319
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1327 ATCTCTTGAAAGGAGATATTCATTTGCTTCTA-ATGATGTGAGTAATCCTGAATGGAGAG 1385
Query 1320 -GTGGAGTTCTTGATATATGGGAAGATATTTCATTGGCTTATCTCTCTCTGTTCTGCACT 1378
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AG-GGAGTTCTTGACATATGGGAAGATATTTCATTGGCTTATCTCTCTCTGTTCTGCACT 1444
Query 1379 TTCTGTGTGTTTGGTTGGAACATGGAGAGGATTGGGTTTGGGAACATGTATGTGCACATT 1438
|| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1445 TTTTGTTTGTTTGGTTGGAACATGGAGAGGATTGGGTTTGGGAATATGTATGTGCACATT 1504
Query 1439 GCGACTTTTATTCTCTTCTGTTTGGCTCCTTTCTTTATATTCAACTTGGCTGCTATAAAC 1498
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1505 GCGACTTTTGTTCTCTTCTGTTTAGCTCCTTTCTTTATATTCAACTTGGCTGCTATAAAC 1564
Query 1499 ATCGATAACGAGATGGTAAGGGAAGCACTTGGATATACCGGAATTGTGCTTTGCTTGTTT 1558
|| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1565 ATTGATAACGAGATGGTAAGGGATGCACTTGGATATACTGGGATTGTGCTTTGCTTGTTT 1624
Query 1559 GGTTTGCTCTATGGTGGTTTTTGGAGAATGCAGATGAGGAAAAGATTCAAGTTGCCGGGC 1618
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1625 GGTTTGCTCTATGGTGGTTTTTGGAGAATACAGATGAGGAAAAGATTCAAGTTGCCGGGC 1684
Query 1619 TATAACTTCTGTTGCAGGAGACCTGCGATTGCTGATTGTACACTCTGGTTATTCTGTTGC 1678
|||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1685 TATAACATCTGTTGCGGGAGACCCGCGATTGCTGATTGTACACTCTGGTTGTTCTGTTGT 1744
Query 1679 TGGTGCTCTTTAGCTCAAGAAGTCCGGACCGCCAATTCTTATGAAATAGTGGAGGATAAA 1738
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1745 TGGTGCTCTTTAGCTCAAGAAGTCCGGACCGCGAATTCTTATGAAATAGTGGAGGATAAA 1804
Query 1739 TTCTGCAAAAGAAGTGAAGAAAATAGTAAGATTGATGATGAGGTTGTGGTATCTTCATTA 1798
|| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1805 TTTTGCAAAAGAAGAGAAGAAAATAGTAAGATTGATGATGAGGTTGTCGTATCTGCATTG 1864
Query 1799 CCTCGTGAAGACGGTGTGTTTGATCCGAGTTGCTCGCCTAAGAAGATGACCACGGCGAT- 1857
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1865 CCTCGTGAAGACGGTGTGTTTGATCCGAGTTGCTTGCCTAAGAAGATGACCACGACGATG 1924
Query 1858 A--GCTAGCTCGT-CTCTTAGCCCGAGCAGACAGAAAGATGAAACTTGCTTGGGAGATAA 1914
| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1925 ATAGCTAGCTC-TACTCTTAGCCCGAGCAGACAGAAAGATGAAACTTGCTTGGGAGAGAA 1983
Query 1915 AAGTGATGAAGCTCTAAGTCCACCTTCTCCTCCATTCATACACAGA-A-GCTAG 1966
| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1984 AGGTGATGAAGCTCTAAGTCCACCTTCTCCTCCATTCATACACAGAGAAGCTAG 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97389057300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5