BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487332
Length=365
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05370.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 pr... 442 1e-123
AT3G10860.1 | Symbols: | Cytochrome b-c1 complex, subunit 8 pr... 279 9e-75
> AT5G05370.1 | Symbols: | Cytochrome b-c1 complex, subunit 8
protein | chr5:1590797-1591903 REVERSE LENGTH=433
Length=433
Score = 442 bits (239), Expect = 1e-123
Identities = 340/385 (88%), Gaps = 22/385 (6%)
Strand=Plus/Plus
Query 1 TCGGAATCGGAGAATTGGTCGACAAAAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTG 60
||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 8 TCGAAATCGGAGATTTGGTCGTCGAAAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTG 67
Query 61 GTTTACGCGTTATCGCCGTTTCAGCAGAAGATCATGACGGGTCTATGGAAGGATCTGCCG 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 68 GTTTACGCGTTATCGCCGTTTCAGCAGAAGATCATGACGGGTCTTTGGAAGGATCTTCCG 127
Query 121 GAGAAGATCCACCACAAGGTCTCTGAGAATTGGATCAGCACTATTCTCCTCCTCGCTCCC 180
|||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 128 GAGAAGATTCACCACAAGGTCTCAGAGAATTGGATCAGTACTATTCTCCTCGTCGCTCCT 187
Query 181 GTCATCGGAACCTACTCGTATGCTCAGTACTACAAAGAACAAGAGAAGCTGGAGCACAGG 240
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 188 GTCGTCGGAACCTACTCGTATGCTCAGTACTTCAAAGAACAAGAGAAGCTGGAGCACAGG 247
Query 241 TTCTAAAGCATG-ATTT-TACAAGAATCCAATTCTTTCTTCACTTTTCATTCTCCAAAAT 298
|||||| ||||| | | | | || |||||||||||| ||| |||||||||||||||||
Sbjct 248 TTCTAA-GCATGGAGATAT-CTTGATTCCAATTCTTTCCTCATTTTTCATTCTCCAAAAT 305
Query 299 GTGGTCAATTGACA-------A-TTT-ATA---------GAAGCGGAAAAGTTGCTTCCT 340
||||| ||||||| | ||| ||| |||||||||||||||||||||
Sbjct 306 GTGGTTTATTGACAGTTTTGTAATTTTATACTCTAAATAGAAGCGGAAAAGTTGCTTCCT 365
Query 341 TACATTTTTTGTTGAATAAATTTGT 365
| |||||||||||||||||||||||
Sbjct 366 TGCATTTTTTGTTGAATAAATTTGT 390
> AT3G10860.1 | Symbols: | Cytochrome b-c1 complex, subunit 8
protein | chr3:3399736-3400741 FORWARD LENGTH=525
Length=525
Score = 279 bits (151), Expect = 9e-75
Identities = 205/231 (89%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 25 AAAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCG-TTATCGCCGTTTCA 83
|||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 77 AAAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCACTT-TCTCCGTTTCA 135
Query 84 GCAGAAGATCATGACGGGTCTATGGAAGGATCTGCCGGAGAAGATCCACCACAAGGTCTC 143
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 136 GCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAGATCCACCACAAGGTCTC 195
Query 144 TGAGAATTGGATCAGCACTATTCTCCTCCTCGCTCCC-GTCATCGGAACCTACTCGTATG 202
|||||||||||||||| | | ||| ||| | | ||| ||| | |||||||||| |||||
Sbjct 196 TGAGAATTGGATCAGCGCCACTCTTCTCGTTAC-CCCTGTCGTTGGAACCTACTGGTATG 254
Query 203 CTCAGTACTACAAAGAACAAGAGAAGCTGGAGCACAGGTTCTAAAGCATGA 253
||||||| | ||| ||||| |||||||| |||||||| |||| ||||||||
Sbjct 255 CTCAGTATTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGAAGCATGA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17141302409
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5