BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487334
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05390.1 | Symbols: LAC12 | laccase 12 | chr5:1594753-159704... 2743 0.0
> AT5G05390.1 | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042
FORWARD LENGTH=1698
Length=1698
Score = 2743 bits (1485), Expect = 0.0
Identities = 1628/1699 (96%), Gaps = 2/1699 (0%)
Strand=Plus/Plus
Query 1 ATGACGACTGTCCACACATTCTCTATTTTATTGTTCCTTTGTTCCCTTTTCTCGGCTTCA 60
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1 ATGACGACTGTTCACACATTCTCTATATTATTGTTCTTTTGTTCCCTTTTCTCGGCTTCA 60
Query 61 TTGATTATCGCCAAAGTCCAACACCATGATTTTGTCATACAAGAGACGCCGGTGAAGAGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGATTATCGCCAAAGTCCAACACCATGATTTTGTCATACAAGAGACGCCGGTGAAGAGG 120
Query 121 CTGTGCAAGACCCGTAACGCCATCACCGTCAACGGAATGTTTCCGGGGCCTACGCTCGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGTGCAAGACCCGTAACGCCATCACCGTCAACGGAATGTTTCCGGGGCCTACGCTCGAA 180
Query 181 GTCAACAACGGCGATACTCTTGAAGTCAAAGTGCATAACCGTGCTCGTTACAATATCACC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCAACAACGGCGACACTCTTGAAGTCAAAGTGCATAACCGTGCTCGTTACAATATCACC 240
Query 241 ATCCATTGGCATGGAGTTAGGCAGATAAGAACTGGATGGGCTGATGGGCCTGAATTTGTA 300
||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| ||
Sbjct 241 ATCCATTGGCATGGAGTGAGGCAGATAAGAACCGGATGGGCTGATGGCCCAGAATTCGTG 300
Query 301 ACCCAATGCCCGATCCGACCCGGAAAGAGCTACACGTACCGTTTCACTATTCAAGGCCAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ACCCAATGCCCGATCCGACCCGGAAAGAGCTACACGTACCGTTTCACTATCCAAGGCCAA 360
Query 361 GAAGGGACATTATGGTGGCACGCTCACAGCTCCTGGCTACGAGCCACTGTCTACGGCGCA 420
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 361 GAAGGGACATTGTGGTGGCACGCTCACAGCTCTTGGCTCCGAGCCACTGTCTACGGCGCA 420
Query 421 CTCATCATCCACCCAACCCCTGGTTCCTCTTTTCCTTTCCATAAACCAGACCGCCAAACC 480
|||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 421 CTCATCATTCACCCAACCCCTGGTTCCTCTTTTCCTTTCCCTAAACCGGACCGCCAAACC 480
Query 481 GCACTCATGCTCGGGGAATGGTGGAATGCAAATCCGGTTGATGTAATTAACCAAGCTACT 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GCCCTCATGCTCGGGGAATGGTGGAATGCAAATCCGGTTGATGTAATTAACCAAGCGACT 540
Query 541 CGAACCGGAGCTGCTCCGAATATATCCGACGCTTATACCATCAATGGCCAACCCGGTGAT 600
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 541 CGAACCGGAGCTGCTCCTAATATATCCGACGCTTATACCATCAATGGTCAACCGGGTGAT 600
Query 601 CTCTATAATTGCTCAACCAAAGAGACTGTTGTAGTACCGATAAATTCAGGGGAAACAAGT 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCTATAATTGCTCGACCAAAGAGACTGTTGTAGTACCGATAAATTCAGGGGAAACAAGT 660
Query 661 CTCCTACGAGTGATCAACGCAGCTTTAAACCAACCGCTATTTTTCACGGTGGCTAACCAC 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 CTCCTACGAGTGATCAACGCAGCTTTAAACCAACCGCTATTTTTCACTGTGGCTAACCAC 720
Query 721 AAGCTCACTGTGGTTGGAGCCGATGCTTCTTACCTGAAACCATTCGCCACAAAGGTCCTT 780
||||||||||| ||||||||||| || |||||||| ||||||||| ||||||||||||||
Sbjct 721 AAGCTCACTGTAGTTGGAGCCGACGCATCTTACCTCAAACCATTCACCACAAAGGTCCTT 780
Query 781 ATGTTAGGTCCAGGACAAACCACTGACGTACTTCTAACCGCCGACCAACCGCCAAAACGC 840
|||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 781 ATGTTAGGTCCAGGCCAAACTACTGACGTACTTCTAACCGCAGACCAACCCCCAAAACGC 840
Query 841 TATTACATAGCAGCAAGAGCTTATCAAAGCGCCCAAAACGCACCGTTCGATAACACCACA 900
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 841 TATTACATAGCAGCAAGAGCTTACCAAAGCGCTCAAAACGCACCGTTTGATAACACCACA 900
Query 901 ACTACTGCCATCCTCCAATACAAGAAAACGAGGGCCACTTCTAAACCAATCGTGCCGGTT 960
||||| ||||| |||||||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct 901 ACTACAGCCATTCTCCAATACAAGAAGACGACGACCACTTCTAAACCAATCATGCCGGTT 960
Query 961 TTGCCTGCCTTCAACGACACCAACACCGTGACGTCTTTCTCAAGGAAGTTCAAATCTCTC 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGCCTGCCTTCAACGACACGAACACCGTGACGTCTTTCTCAAGGAAGTTCAAATCTCTC 1020
Query 1021 CGAAACGTCGTCGTACCGAAAACAATCGACGATAATTTGTTCTTCACTATCGGTTTAGGT 1080
|| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 1021 CGTAACGTCGTCGTACCGAAAACAATCGATGATAATTTGTTCTTCACCATTGGTTTAGGT 1080
Query 1081 CTCGATAATTGTCCCAAGAATTTCCCTAAAAACCGGTGCCAAGGCTTAAACGGAACCCGG 1140
|| |||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||
Sbjct 1081 CTTGATAATTGTCCCAAAAAATTCCCTAAAAGCCGGTGCCAAGGCTTGAACGGAACCCGG 1140
Query 1141 TTTACTGCATCGATGAACAACGTTTCGTTTGTTCTACCGTCGAATTTCTCGCTCTTGCAA 1200
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 TTTACCGCATCGATGAACAACGTTTCGTTTGTTCTACCGTCGAATTTCTCGCTCTTACAA 1200
Query 1201 GCACATTCCAACGGCATTCCCGGCGTTTTCACAACGGATTTTCCGTCTAAACCGCCGGTT 1260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCACATTCCAACGGAATTCCCGGCGTTTTCACAACGGATTTTCCGTCTAAACCGCCGGTT 1260
Query 1261 AAATTCGATTATACCGGAAATAACATAAGCCGGGCTTTGTTTCAGCCGGTTAAGGGTACT 1320
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1261 AAATTCGATTATACCGGAAATAACATAAGCAGGGCTCTGTTTCAGCCGGTTAAGGGTACT 1320
Query 1321 AAACTGTACAAACTCAAGTATGGATCTCGAGTTCAGGTTGTTTTACAGGATACGAACATT 1380
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1321 AAACTGTATAAACTAAAGTATGGATCTCGAGTTCAAGTTGTTTTACAGGATACAAACATT 1380
Query 1381 GTTACGTCGGAGAATCACCCGATTCATCTTCATGGTCACGATTTCTACATTGTTGGTGAA 1440
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1381 GTTACATCGGAGAATCACCCGATTCATCTTCACGGTTACGATTTCTACATTGTTGGTGAA 1440
Query 1441 GGGTTTGGTAACTTTAATCCCAAGAAAGATACTTCTAAGTTTAATCTTGTTAATCCTCCA 1500
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1441 GGGTTCGGTAACTTTAATCCCAAGAAAGATACTTCTAAGTTTAATCTTGTTGATCCTCCG 1500
Query 1501 CTTAGAAACACTGTGGCTGTTCCTGTTAATGGATGGGCTGTTATAAGATTCGTGGCAGAT 1560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 CTTAGAAACACTGTGGCTGTTCCTGTTAATGGATGGGCTGTTATCAGATTCGTGGCAGAT 1560
Query 1561 AATCCAGGGGTTTGGTTGATGCATTGTCACTTAGATGTTCATATAAAGTGGGGT-TTGGC 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1561 AATCCAGGGGTTTGGTTGATGCATTGTCACTTAGATGTTCATATAAAGTGGGGTCTTG-C 1619
Query 1620 TATGGCGTTCTTGGTCGACAATGGTGTCGGAGAATTGGAGACTCTTGAAGCTCCTCCTCA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TATGGCGTTCTTGGTCGACAATGGTGTCGGAGAATTGGAGACTCTTGAAGCTCCTCCTCA 1679
Query 1680 CTATCTACCTATTTGCTAG 1698
| |||||||||||||||||
Sbjct 1680 CGATCTACCTATTTGCTAG 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5