BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487340
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05480.1 | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminy... 3037 0.0
AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryo... 294 2e-78
AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like fam... 95.3 2e-18
> AT5G05480.1 | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase A protein | chr5:1622172-1624270 REVERSE
LENGTH=2099
Length=2099
Score = 3037 bits (1644), Expect = 0.0
Identities = 1961/2108 (93%), Gaps = 46/2108 (2%)
Strand=Plus/Plus
Query 1 AAATGTAAAAACGCTTTGGTGTTTAACCACGTCACTTCTCTCTCTCCAGTCTCCATTGAA 60
|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 3 AAATATAAAAACGCTTTGGTGTTTAATTACGTCCCTTCTCTCTCTCCAGTCTCCATTGAA 62
Query 61 GTTTGCATCGGCGAGCTCGAATAATCATCAAAAACACAGAAGCAATCATGCCGGAGATTA 120
||| ||||||||||||||| || | ||||||||||||||||| |||||||| ||| |
Sbjct 63 GTTCGCATCGGCGAGCTCGGAT-A--ATCAAAAACACAGAAGCTATCATGCC--AGA-AA 116
Query 121 ACCAAAACGGCGCCGTTAAGTTCTTAATT-ACACTTGCTTTTCTCACTGCTACCACTGTT 179
| ||||||||||||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct 117 ATCAAAACGGCGCCGTTAAGTTCTT-CTTCACACTTGCTTTTCTCACTGCTACCGCCGTT 175
Query 180 TCTCTTCCTTCTTCGCCGGATCGATTCCTCAGATCGGCTTCGACTTATCTCCGGTCACCG 239
|||| |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 176 TCTCGTCCTTCCTCGCCGGATCGATTCCTTAGATCGGCTTCGACTTGTCTCCGGTCACCG 235
Query 240 GACGAGCCTCAGGAGTATGAGGAGCTCAGGCGGCCCCTACCGTCCGATCAGCTAACGCCG 299
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTCGAGCCTCAGGAGTACGAGGAGCTCAGGCGGCCCCTACCGTCCGATCAGCTAACGCCG 295
Query 300 TCATGCTCTCACGTCCTTC-TCCGCCACTCATTTGCCAACACCATCAATAGACCTCCTTT 358
|||||||| || |||| || ||||||| ||||| |||||||||||||| |||||||||||
Sbjct 296 TCATGCTCGCATGTCC-TCTTCCGCCATTCATTCGCCAACACCATCAACAGACCTCCTTT 354
Query 359 TACCACTCCATACAGTCCACCTTCCAGCTGTACATCGCCGCCGTGGTCTT-TCGTTGTAC 417
|||||||||||||| ||| ||||||||||| | ||||||||||||||||| | |||||||
Sbjct 355 TACCACTCCATACACTCCCCCTTCCAGCTGCATATCGCCGCCGTGGTCTTAT-GTTGTAC 413
Query 418 TTGACCTACGCGCCGCCTCGAGTGGTGATCAGTACGATCGTATCTCCGGTTTGTGGCTCG 477
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 414 TTGACCTACGCGCCGCCTCGAGTGGCGATCAGTACGATCGTATCTCCGGCTTGTGGCTCG 473
Query 478 GCGGAGTGGAGCTACTCCGCACAAGTACGGCGGAGCCGAGTCCATCAGGAATCTTCTGGA 537
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 474 GCGGAGTGGAGCTACTTCGCACCAGTACGGCGGAGCCGAGTCCATCCGGAATCTTCTGGA 533
Query 538 ATGTTCGGAAAGACGTCTCTAGGTATTCCTCGCTCTTTATGAGATCCGATTTAAATGTCA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATGTTCGGAAAGACGTCTCTAGGTATTCCTCGCTCTTTATGAGATCCGATTTAAATGTCA 593
Query 598 CAATGATGCTCGAGAACATAGTCAACGATGTTTACACAGGCATCTATCATATAAATGTCA 657
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 594 CAATGATGCTTGAGAACATAGTCAACGATGTTTACACAGGCATCTATCATATCAATGTCA 653
Query 658 CCCTCATCTTCTACGAATTCAATCATATTGCGTCAAATTTGAAGATTAATAACAGATTAG 717
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 654 CCCTCATCTTCTACGAATTCAATCCTATTGCGTCAAATTTGAAGATTAGTAACAGATTAG 713
Query 718 GCTTTGTGGAATCCCAGAGAAGAGATCAAACCCCTGCGGATTTGATAATCCCGATAGGTG 777
| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| || |||
Sbjct 714 GGTTTGTGGATTCCCAGAAAAGAGATCAAACCCCTGCGGATTTGATAATTCCGGTATGTG 773
Query 778 CCGGAGGGAACAGAGGGCTT-TGGTTCATGATCGAGAACCCTACAGAAACTTACTCAAAA 836
|||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||
Sbjct 774 ACGGAGGGAACAGAGGG-TTCTGGTTCATGATCGAGAACCCCAGAGAAACTTACTCAAAA 832
Query 837 CGAATTCAAATTCCGTCCAACACTCGTCAGATCGTGCTGGAACTATATGTATCGTTCCAT 896
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 833 GGAATTCAAATTCCGTCCAACACTCGTCAGATTGTGCTGGAACTATATGTATCGTTCCAT 892
Query 897 GGAAACGATGAGTTCTGGTATTCAAACCCGCCAAATTCTTACATCAGAACGAACAATCTA 956
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 893 GGAAACGATGAGTTCTGGTATTCAAACCCGCCAAATTCTTATATCAGAACGAACAATCTA 952
Query 957 GCAACCGGGCGTGGCAATGGTGCGTACCGAGAAGTTTTTGTTAAGATAGACGGGAGATAT 1016
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 953 ACAACCGGGCGTGGCAATGGTGCATACCGGGAAGTTTTTGTTAAGATAGATGGGAGATAC 1012
Query 1017 GTGGGATCCGAGGTGCCATTCCCCGTGATCTTTACAGGCGGAATCAATCCCTTGTTCTGG 1076
|||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||
Sbjct 1013 GTGGGATCCGAGGTGCCATTTCCGGTGATCTTTACTGGTGGAATCAATCCCTTGTTCTGG 1072
Query 1077 GAACCAGTTGTTGCAATCGGTGCATTCAATCTACCTTCCTACGATATGGACTTGACTCCA 1136
||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 1073 GAACCAGTTGTAGCAATCGGTGCCTTCAATCTACCTTCCTATGACATGGACTTGACGCCA 1132
Query 1137 TTTCTCGGGTTGCTTTTAGATGGAAAGTCTCATGAGTTTGCGTTTGGGGTCTACGATGGG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1133 TTTCTCGGGTTGCTTTTAGATGGAAAGTCTCATGAGTTTGCGTTTGGGGTCAACGATGGG 1192
Query 1197 ATATCATACTGGCTTGTGGACGCAAATTTGCACCTCTGGTTAGATCACGGGTCTTCGAAT 1256
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATATCATACTGGCTTGTGGACGCTAATTTGCACCTCTGGTTAGATCACGGGTCTTCGAAT 1252
Query 1257 GTTGAAGCTGGGTCTAGACTTTACGATAGCCCGAGTCGACATATGGTGAGACAAGAAAAG 1316
||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||
Sbjct 1253 GTTGAAGCTGGGTCTAGACTTTATGATAGCCCGAGTCGGCATATGATGAGACAAGAACAG 1312
Query 1317 TTTGAACAGCTTGATGGGTCGTTTAGGGTTGAAGCAGAGGTAAGTAGTGAATATGATGGC 1376
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1313 CTTGAACAGCTTGATGGGTCGTTTAAGGTTGAAGCAGAGGTAAGTAGTGAATATGATGGC 1372
Query 1377 TGGGTTAGATCATGTAAAGGTAATCTGACCACTATGGTCAAGAGCATGTTCAAGGTTGAC 1436
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1373 TGGGTTAGATCAAGTAAAGGTAATCTGACCACCATGGTCAAGAGCATGTTCAAGGTTGAC 1432
Query 1437 AGCTTGGTGAGGTTCGAGAAAAACGGAACATACAAGAGCGTTGAGCAGAGGGTGGAGACA 1496
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 1433 AGCTTGGTGAGGTTCGAGAAAAACGGAACATACAAGAGGGTTGAGCAGAGAGTGAAGACC 1492
Query 1497 GAACGGATCGTGGAGGTGACTTCTGAATCCGGTAAACCAGTGAATCGATTTGTGCACCAG 1556
||||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||||
Sbjct 1493 GAACGGATCGTGGAGGTGACTTCTGAATCGGGTAAACCGGTGAATCGAGTCGTGCACCAG 1552
Query 1557 CGGACATATCCTCTCACAGTGATCACTTCTACTCTTAGAGGGTTAACCAA-G----G-AT 1610
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1553 CGGACATATCCTCTTACAGTGATCACTTCTACTCTTAGAGGGTTAACCAACGACAAGGAT 1612
Query 1611 ACATATATGCTCGTGACAAATGTTTCACACGCCTTGAATGAGACACATTCAGATGGAGAG 1670
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 ACGTATATGCTCGTGACGAATGTTTCACACGCCTTGAATGAGACACATTCAGATGGAGAG 1672
Query 1671 GCTTCGACCCAAGTTTACAATAGACAAGACTCAGAGGGTTGGATGGAGGTTGAAGATCAC 1730
|||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GCTTTGATCCAAGTTTATAGCAGACAAGACTCAGAGGGTTGGATGGAGGTTGAAGATCAC 1732
Query 1731 AATGTCTTGGCCGGTGAAGCGAGCACAAGACAGAGTCTTAGCTACATCGATGAGTTCAGC 1790
||||||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 1733 AATGTCTTGGCTGGTGAAGCGAGCACAAAACAGAGTCTTAGCTATATCGATGAATTCAGC 1792
Query 1791 TGTTATTCCCACACCATCGTTGCGGCCAATGGCGAGATTACCCAGGACAGTTCAT-TCGA 1849
|||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||| | ||
Sbjct 1793 TGTTATTCCCGCACCATCGTTGCGGCTAATGGGGAGATTGCCCAGGACAGTTCATCT-GA 1851
Query 1850 TTCTTGCACTTCGTCTTCATCCTCAGAGCTCAACAC-ATTGA--A--T------------ 1892
|||||| ||||||||||||| ||||||||||||||| ||||| | |
Sbjct 1852 TTCTTGTACTTCGTCTTCATTCTCAGAGCTCAACACTATTGAGCAGCTTATCATAACCAA 1911
Query 1893 -G--A--AA-CACTTGTCTTGAATAAGAGATGCTTGTACTACTAACCATATTCGGGGTCA 1946
| | || |||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1912 TGTTATGAAACACTTGTCGTGAATAAGAGATGCTTGTACTACTAACCATGTTTGGGGTCA 1971
Query 1947 AACaaaaaa-aCTGTTTTTGCTCAAAGGGAAACAAAATTGTAGGATCTAAAGCAGAAACA 2005
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 AACAAAAAATACTGTTTTTGCTCAAAGGGAAACAAAATTGTAGGATCTAAAGCAGAAACA 2031
Query 2006 GCAGTTACAATGCTTTTGCTTTTGTTCATTCAATTATCCCGCTACCTCCATCGATATCGA 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 GCAGTTACAATGCTTTTGCTTTTGTTCATTCAATTATCCCGCTACCTCCATCGATATCGA 2091
Query 2066 CTTCTCCC 2073
||||||||
Sbjct 2092 CTTCTCCC 2099
> AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryotic
translation initiation factor 2 alpha subunit | chr5:1620458-1622340
FORWARD LENGTH=1282
Length=1282
Score = 294 bits (159), Expect = 2e-78
Identities = 166/169 (98%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 1906 TGAATAAGAGATGCTTGTACTACTAACCATATTCGGGGTCAAACaaaaaa-aCTGTTTTT 1964
|||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 1282 TGAATAAGAGATGCTTGTACTACTAACCATGTTTGGGGTCAAACAAAAAATACTGTTTTT 1223
Query 1965 GCTCAAAGGGAAACAAAATTGTAGGATCTAAAGCAGAAACAGCAGTTACAATGCTTTTGC 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GCTCAAAGGGAAACAAAATTGTAGGATCTAAAGCAGAAACAGCAGTTACAATGCTTTTGC 1163
Query 2025 TTTTGTTCATTCAATTATCCCGCTACCTCCATCGATATCGACTTCTCCC 2073
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TTTTGTTCATTCAATTATCCCGCTACCTCCATCGATATCGACTTCTCCC 1114
> AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like family
protein | chr5:1624206-1629234 FORWARD LENGTH=2093
Length=2093
Score = 95.3 bits (51), Expect = 2e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 1 AAATGTAAAAACGCTTTGGTGTTTAACCACGTCACTTCTCTCTCTCCAGTCTCCATTGAA 60
|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 63 AAATATAAAAACGCTTTGGTGTTTAATTACGTCCCTTCTCTCTCTCCAGTCTCCATTGAA 4
Query 61 GTT 63
|||
Sbjct 3 GTT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5