BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487343
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05500.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1120 0.0
> AT5G05500.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr5:1629667-1630396 FORWARD LENGTH=730
Length=730
Score = 1120 bits (606), Expect = 0.0
Identities = 686/724 (95%), Gaps = 8/724 (1%)
Strand=Plus/Plus
Query 1 AAGAAGAAGAAGCTTAAGAAACAGAGGGCATAACAAGTAACATGGACTCAAGAGCCTTAC 60
|||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 9 AAGAAGAAGAAGTTTAAGAAGCAGAGTGTATAACAAGTAACATGGACTCAAGAGCCTTAC 68
Query 61 CCTTCTCCGTTCTCGTCACCCTCATCGCCATGGCGGTGTTTGCTAACGGTTACAGTActc 120
|||||||||||||||||| |||||| || | ||||||||| || |||| |||| ||||
Sbjct 69 CCTTCTCCGTTCTCGTCATCCTCATTGCTACGGCGGTGTTGGCCAACGCTTAC---ACTC 125
Query 121 ctcctcctcctcctccAACCACAGCATACCCTGCCGTGAAAACCGTGGAAGCGGCAGTGG 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 126 CTCCTCCTCCTCCTCCAACCACCGCATACCCTGCCGTGAAAACCGTGGAAGCGGCAGTGG 185
Query 181 AAGGAATGGTGTACTGTCAATCCTGCGACAAATTCGGATCATGGTCGTTGGCCGGAGCAG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 186 AAGGAATGGTGTACTGTCAATCCTGCGACAAATTCGGATCATGGTCATTGGCCGGAGCAG 245
Query 241 AAGCCT-TAGCCGGAGCTAAAATCAGCATTATCTGCAAGAACCATAGGCAACAAGTGAGT 299
|||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 246 AAGC-TATAGCCGGAGCTAAAATCAGCATTATCTGCAAGAATCATAGGCAACAAGTGAGT 304
Query 300 TTCTACAAAGTCTTTAAAACTGATTCCTACGGCCATTTCTATGGTGAGCTCAAAGGTTTC 359
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCTACAAAGTCTTTCGAACTGATTCCTACGGCCATTTCTATGGTGAGCTCAAAGGTTTC 364
Query 360 AAGATGACTCCACATTACTTGGACCATCCTCTTCATTCTTGCCGGGCCAAGCTCGTCTCT 419
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 365 AAGATGACTCCACATTTCTTGGACCATCCTCTTCATTCTTGCCGAGCCAAGCTCGTCTCT 424
Query 420 TCTCCTCGTGAAGACTGCAATCTCTTCTCCAACATTAACAATGCTCTAGACGGAGCTTCT 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 425 TCTCCTCGTGAAGACTGCAATCTCTTCTCCAACATTAACAATGCTCTAGATGGAGCTCCA 484
Query 480 CTCCGGTATGAAGAGAAGAGGCTCAAGTGGACAAACTATGAGGCCGTAATTTACGCCGCT 539
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 485 CTCCGATATGAAGAGAAGAGGCTCAAGTGGACTAACTATGAGGCCGTGATTTACGCCGCT 544
Query 540 GGTCCATTGGCTTTCCGTCCTGACCACTGCCCCGCGACTGCACCACCCACTTACTGATTT 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 545 GGTCCATTGGCTTTCCGTCCTGACCACTGCCCTGCGACTGCACCACCCACTTACTGATTT 604
Query 600 GGGTTGTGAAGATCATCATATACTAATTGTATAAGACAATGTTATTGATTTGTT-TCTAT 658
||||| |||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 605 GGGTTTTGAAGATCATCATATACTAATTACATAAGACAATGTTATTGATTT-TTCTCTAT 663
Query 659 TTTGTATCTTTT-GGTTTTATGGTTGGTCAATTGTTTGTAAGAGGCTGAGTAATATTGTA 717
|||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 664 TTTGTATCTTTTTGGTTTTATGGTTTGTCAATTGTTTGTAAGATGCTGAGTAATATTGTA 723
Query 718 ATGG 721
||||
Sbjct 724 ATGG 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5