BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487345
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05520.1 | Symbols: | Outer membrane OMP85 family protein |... 2820 0.0
AT3G11070.1 | Symbols: | Outer membrane OMP85 family protein |... 1066 0.0
> AT5G05520.1 | Symbols: | Outer membrane OMP85 family protein
| chr5:1632845-1635342 FORWARD LENGTH=1880
Length=1880
Score = 2820 bits (1527), Expect = 0.0
Identities = 1751/1859 (94%), Gaps = 16/1859 (1%)
Strand=Plus/Plus
Query 1 GGAGGAGCCGTCAAATTGATTTCGCCGATTTGCTCA----T--CTCTCAGTTGCTTTCCC 54
|||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 1 GGAGGAGCCGTCAAATTGATTTCGCCGATTTGCTCATCTCTGACTCTCAGTTGCTTT-GC 59
Query 55 TCCTTCTCATGGCGAATCCGACGGAGAAACCCGAACCGATTCCTTCAACACCTAAACCCG 114
|||||||||||| ||||||| ||||||||||||| |||| ||| |||| ||| ||| ||
Sbjct 60 TCCTTCTCATGGAGAATCCGGCGGAGAAACCCGACCCGAATCCATCAAAACCCAAAATCG 119
Query 115 AGCCTAaagatgaaagagaagagctagaagacattaacggcgga-gaagaagaagaggaa 173
| || |||||||||||||||| |||| ||| ||||||||| || |||||||||||||||
Sbjct 120 AATCTGAAGATGAAAGAGAAGAACTAGGAGATATTAACGGC-GACGAAGAAGAAGAGGAA 178
Query 174 gagtatgagggcgaagaCGATGGGAAACCTCGAACGCGAGAGGATGCAATCTCGGATAGG 233
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 GAGTATGAGGAAGAAGACGATGGGAAACCTCGAACGCGAGAGGATGCAATCGCGGATAGG 238
Query 234 ATCAAAGCTGAGTCTCTGTTCCGTCGTATGCGAGCAACTCCGGTCGCTGTGCGTGTTCAC 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATCAAAGCTGAGTCTCTGTTCCGTCGTATGCGAGCAACTCCGGTCGCTGTGCGTGTTCAC 298
Query 294 GACGTGATCGTCAAGGGAAACGAGAAGACTAAGGATCATGTCATCGAGGCTGAGGTTGAT 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 GACGTGATCGTCAAGGGAAACGAGAAGACTAAGGATCATGTCATCGAGGCTGAGGTGGAT 358
Query 354 GTTTTGAGGCAAGCGACTACGTTGCAGGAGCTTCTCAAAGCCTCTAAGGTTGCCAATTTC 413
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTGTGAGGCAAGCCACTACGTTGCAGGAGCTTCTCAAAGCCTCTAAGGTTGCCAATTTC 418
Query 414 AATCTTCAAGCGCTTGATATCTTCGATGCTGTCAAAATTACGCTTGATTCTGGTCCTCCT 473
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 419 AATCTACAAGCGCTTGATATCTTCGATTCAGTCAAAATTACGCTTGATTCTGGTCCTCCT 478
Query 474 GAGCTTCCTGGTACCACCAATGTGGTCATCGATGTTGTTGAGAGCAAAAGCCCTTTCACC 533
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 479 GAGCTTCCTGGTACCACCAATGTTGTTATCGATGTTGTTGAGAGCAAAAGCCCTATCACC 538
Query 534 GGCCAAATCGGAACTTTCACTAAAGCCGAGGCTAGATCATCAAGCCTTGAAGGCTCTTTG 593
|| ||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 539 GGTCAAATCGGAACCTTCACTAAAGCAGAGGCTCGGTCATCAAGCCTTGAAGGCTCTTTG 598
Query 594 AAGTACAAGAACATTTTTGGTTATGGAGATATCTGGGACGGGTCTCTTGCCTATGGCTGT 653
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 599 AAGTACAAGAACATATTTGGGTATGGAGATATCTGGGACGGGTCTCTTGCTTATGGCTGT 658
Query 654 GATCACTCTACTGAGGTCGGCTTAGGGATGTATTTGCCAAGGTTCAGAGGGCGTCCTACT 713
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 GATCACTCTGCAGAGGTCGGCTTGGGGATGTATTTGCCAAGGTTCAGAGGGCGTCCTACT 718
Query 714 CCATTTACGTCGCGGGTATATCTTTCTACCCAAGATTGGCTTAAGTTCTCATCTTATAAA 773
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct 719 CCATTTACGTCGCGGGTTTACCTTTCTACCCAAGATTGGCTTAAGTTTTCGTCTTATAAA 778
Query 774 GAACGAGCTCTTGGTCTTTCCCTCGGGCTTATCGCTAGCAAGTATCATGAGCTGGCCTAC 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAACGAGCTCTTGGTCTTTCCCTCGGGCTTATCGCTAGCAAGTATCATGAGCTGGCCTAT 838
Query 834 AATATTGCATGGCGTAACGTGATAGACCCATCGCAAATGGCATCAAGATCAATAAGGAGA 893
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATATTGCATGGCGTAACCTGATAGACCCATCGCAAATGGCATCAAGATCAATAAGGAGA 898
Query 894 CAGCTGGGTCATAATTTGGTTTCTGCTCTGAAGTACACTTTCAAATTTGACCAGAGAAAC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CAGCTGGGTCATAATTTGGTTTCTGCTCTGAAGTACACTTTCAAATTTGACCAGAGAAAC 958
Query 954 TCATCCTTGAGGCCAACACGAGGGTACTCTTTCATCTCTACTTCTCAAATAGGTGGTCTT 1013
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 959 TCATCTTTGAGGCCAACACGAGGTTACTCTTTCATCTCGACTTCTCAAATAGGTGGTCTT 1018
Query 1014 GCGCCTGATAGTCGAACACTCCGCTTTTTGCGCCAGGAAATCGACCTCCGATATGCTGTT 1073
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 GCACCTGATAGTCGAACTCTCCGCTTTTTGCGCCAGGAAATCGACCTTCGATATGCTGTT 1078
Query 1074 CCACTCGGGTTTTATCGTGCTGCTCTGAACTTTGGTGTAGCTGGGGGAATCACATTTCCA 1133
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 CCACTCGGGTTTTATCGTGCTGCTCTGAACTTTGGTATAGCTGGGGGAATCACATTTCCA 1138
Query 1134 TGGGGAAGCGAATACAAGAGCAAAGCTTCTTGTATACCTGAGAGGTTCTTCTTAGGTGGT 1193
|||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1139 TGGGGAAGCGGATACAAGAGCAGAGCTTCTTGTGTACCTGAGAGGTTCTTCTTAGGTGGA 1198
Query 1194 AACATATCACCTGTGTGTTCTTTGGGAGGACCATCTGCGTTATGGGGATTCAAGACTAGG 1253
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 AACATATCGCCTGTGTGTTCTTTGGGAGGACCATCTGCATTATGGGGATTCAAGACTAGG 1258
Query 1254 GGATTGGGTCCTAACGAGCCAAGGAGGGAAGTACAAGACGATGAGAGTGGTAACACATAT 1313
||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1259 GGATTGGGTCCTAACGAACCAAGGAGGGAAGTACAGGACGATGAGAGTGGTGACACATAT 1318
Query 1314 GAACGGGATTTTGTGGGAGGGGATGTTGCGGTCACTGCATTTGCAGACCTCTCTTTTGAT 1373
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1319 GAACGGGATTTTGTGGGAGGAGATGTTGCGGTTACTGCATTTGCAGACCTTTCTTTTGAT 1378
Query 1374 TTCCCATTGAAATGGTTCAGAGACAGAGGAATCCATGGTCATGTGTTTGCATGTGCCGGT 1433
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1379 TTCCCATTGAAATGGTTCAGAGACAGAGGAATCCACGGACATGTGTTTGCATGTGCCGGG 1438
Query 1434 AATATGGCGGAATTATCAGAGAACAAGTATAGGAACTTCACTGCTCCAAAGTTCTTGGAG 1493
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1439 AATATGGCGGAATTATCAGAGAACAAGTATAGGAACTTCACAGCTCCAAAGTTGTTGGAG 1498
Query 1494 ACATTCAGAAGCTCAGTTGGTGCAGGAATCGTGGTACCAACTAGTCTATTTCGCATGGAG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACATTCAGAAGCTCAGTTGGTGCAGGAATCGTGGTACCAACTAGTCTATTTCGCATGGAG 1558
Query 1554 CTTAACTACTGCCACATACTGAAGAAACAAGAACACGATCGAGCGAAATCTGGATTTTTC 1613
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1559 CTCAACTACTGCCACATACTGAAGAAACAAGAACACGATCGAGCAAAATCTGGATTTTTC 1618
Query 1614 ATGACATTCTCAACATCATCTTAATGATACCTTTGATGATATCTTAATTGTGGCTC-GCA 1672
|||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||| |||
Sbjct 1619 ATGACATTTTCAACATCATCTTAATGCTACTTTTGATGATATCTTAATTTTGGCTTTGCA 1678
Query 1673 CTCGCAGGGTCATGGCGGAATCCtttgcttttgttttccatcagctttcattgtttagtt 1732
||| ||| ||||||||||| || |||| |||||||| ||| |||||||||||||||| |
Sbjct 1679 CTCACAGTGTCATGGCGGAGTCTTTTG-TTTTGTTT-CCAGGAGCTTTCATTGTTTAGGT 1736
Query 1733 ttttgtttgGAATTGAAA-CTGTGAAAATTTTAGAGAGAGCTTGCTTACGTTATGTGCGG 1791
| |||||||||||||||| ||||| ||||||||||||||| | |||| | ||||||||
Sbjct 1737 TGTTGTTTGGAATTGAAAACTGTGCAAATTTTAGAGAGAGA--GATTACCTGATGTGCGG 1794
Query 1792 ATTGTTCTTGGGAAGAAGATAGATTAA-AAATAAAAATGAACTAAAGTTGATTTGTTTT 1849
||||||||||||||| |||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1795 ATTGTTCTTGGGAAGGAGATAGATCAAGAAATAAAAATTAACTAAAGTTGATTTGTTTT 1853
> AT3G11070.1 | Symbols: | Outer membrane OMP85 family protein
| chr3:3467754-3470095 FORWARD LENGTH=1890
Length=1890
Score = 1066 bits (577), Expect = 0.0
Identities = 1299/1634 (79%), Gaps = 104/1634 (6%)
Strand=Plus/Plus
Query 37 TCTCTCAGTTGCTTTCCCTCCT-TCTCATGGCGAATCCGACGGAGAAACC-CGAAC-CGA 93
|||||||||| || || || || |||||||||||||||||||||| |||| || || |||
Sbjct 22 TCTCTCAGTTACTATCTCT-CTGTCTCATGGCGAATCCGACGGAG-AACCTCG-ACGCGA 78
Query 94 TTCCTTCAACA-CCTA-AACCCG-AGCCTAaagatgaaag-agaagagctagaa--gaca 147
||| ||| | || | |||| | || || |||| | ||| ||||| || ||| || |
Sbjct 79 ATCC-ACAA-ATCCGAGAACCAGAAG-CTGAAGAAG-AAGTTGAAGAACT-GAACGGATA 133
Query 148 ttaacggcg--ga-gaagaagaagaggaaga-gtatgagggcga--aga-CGATG-GGAA 199
|| || | || | || |||||| || || | | || | ||| | | ||| | |||
Sbjct 134 CGAA-GGTGACGATGGAGGAGAAGATGACGATGGA-GAAGACGATGACACCGA-GTCGAA 190
Query 200 ACCTCGAA--CGCG--AGAGGATGCAATCTCGGATAGGATCAAAGCTGAGTCTCTGTTCC 255
| ||| || |||| || |||| || | | || || ||||| || || || || ||||
Sbjct 191 ATCTCAAACGCGCGAAAGCGGATCCAGTGT-AGACAGAATCAAGGCGGAATCGCTATTCC 249
Query 256 GTCGTATGCGAGCAACTCCGGTCG-CTGTGCGTGTTCACGACGTGATCGTCAAG-GGAAA 313
|||| |||||||| |||| || | | |||||||||||||||||||| || | |||||
Sbjct 250 GTCGGATGCGAGCTGCTCCTGT-GCCGGTGCGTGTTCACGACGTGATTATC-GGTGGAAA 307
Query 314 CGAGAAGACTAAGGATCATGTCATCGAGGCTGAGGTTGATGTTTTGAG-GCAAGCGACTA 372
||||||||||||||| ||| |||| || || || || |||| | |||| | | ||||| |
Sbjct 308 CGAGAAGACTAAGGACCATATCATTGAAGCGGAAGTGGATGCTGTGAGAG-AGGCGACCA 366
Query 373 CGTTGCAGGAGCTTCTCAAAGCCTCTAAGGTTGCCAATTTC-AATCTTCAAGCGCTT-GA 430
||||||| ||||||||| |||| |||| ||||||||| ||| ||||| | ||| || ||
Sbjct 367 CGTTGCAAGAGCTTCTCGAAGCATCTAGGGTTGCCAA-TTCGAATCTCCGTGCG-TTAGA 424
Query 431 TATCTTCGATGCTGTCAAAATTACGCTTGATTCTGGTCCTCCTGAGCTTCCTGGTACCAC 490
|||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 425 TATCTTTGATTCCGTCAACATTACGCTTGATTCTGGTCCTCCTGAGCTTCCTGGTACTAC 484
Query 491 CAATGTGGTCATCGATGTTGTTGAGAGCAAAAGCCCTTTCACCGGCCAAATCGGAACTTT 550
||||||||| ||||| || || ||||||||||||||| ||||||||||||| || | |
Sbjct 485 CAATGTGGTAATCGACGTCGTCGAGAGCAAAAGCCCTCTCACCGGCCAAATTGGTGCCTA 544
Query 551 CACTAAAGCCGAGGCTAGATCATCAAGCCTTGAAGGC-TCTTTGAAGTACAAGAACATTT 609
||||| ||| |||||||||||||||||| |||||| | ||||||||||| ||||||||||
Sbjct 545 CACTAGAGCAGAGGCTAGATCATCAAGCGTTGAAG-CATCTTTGAAGTATAAGAACATTT 603
Query 610 TTGGTTATGGAGATATCTGGGACGGGTCTCTTGCCTATGGCTGTGATCA-CTCTACTGAG 668
|||||||||||||||| |||||||||||| | | ||||||||||| || |||| |||||
Sbjct 604 TTGGTTATGGAGATATTTGGGACGGGTCTATAGTTTATGGCTGTGA-CAACTCTGCTGAG 662
Query 669 GTCGGCTTAGGGATGTATTTGCCAAGGTTCAGAGGGC-GTCCTACTCCATTTACGTCGCG 727
|| || || |||||||||||||||||||||||||| ||| |||||| ||||| || ||
Sbjct 663 GTTGGTTTGGGGATGTATTTGCCAAGGTTCAGAGGATTGTC-TACTCCTTTTACTTCCCG 721
Query 728 GGTATATC-TTTCTACCCAAGATTGGCTTAAGTTCTCATCTTATAAAGAACGAGCTCTTG 786
| | || |||| || ||||| ||||||||||| ||||| |||||||||||| | || |
Sbjct 722 TCTTT-TCCTTTCGACTCAAGACTGGCTTAAGTTTTCATCGTATAAAGAACGATCCCTCG 780
Query 787 GTCTTTCCCTCGGGCTTATCGCTAGCAAGTATCATGAGCTGGCCTACAATATTGCATGGC 846
||||||| || || ||| || | ||||||||||| |||||| ||||| ||||| ||||
Sbjct 781 GTCTTTCTCTTGGTCTTTTCTCAAGCAAGTATCACGAGCTGATCTACACGATTGCGTGGC 840
Query 847 GTAA-CGTGATAGACCCATCGCAAA-TGGCAT-CAAG-ATCAATAAGGAGACAGCTGGGT 902
|||| | |||| || ||||| ||| || | | || | ||||||||||||||| |||||
Sbjct 841 GTAATC-TGATCGATCCATCACAAGCTG-C-TGCA-GTATCAATAAGGAGACAACTGGGA 896
Query 903 CATAATTTGGTTTCTGC-TCTGAAGTACACTTTCAAATTTGACCAGAGAAACTCATCCTT 961
|| | | || ||||||| | ||||||| ||||| | ||||| |||||||||||| |||
Sbjct 897 CACAGTCTGCTTTCTGCGT-TGAAGTATACTTTTAGGTTTGATCAGAGAAACTCAAGCTT 955
Query 962 GAGGCCAAC-ACGAGGG-TACT-CTTTCATCTCTACTTCTCAAATAGGTGGTCTTGCGCC 1018
||||||||| | | || || | ||||||||||||| |||||||| ||||||||||| ||
Sbjct 956 GAGGCCAACTA--ATGGATA-TGCTTTCATCTCTACATCTCAAATTGGTGGTCTTGCTCC 1012
Query 1019 TGATAGTCGAACACTC-CGCTTTTTGC-GCCAGGAAATCGACCTCCGATATGCTGTTCCA 1076
|||||| |||| || ||||| || || ||||| | || || || |||||||||||
Sbjct 1013 TGATAGCCGAAG-CTTACGCTTCCTGAAGC-AGGAAGTTGATCTTCGGTATGCTGTTCCG 1070
Query 1077 CTCGGGTTTTATCG-TGCTGCTCTGAACTTTGGTGTAG-CTGGGGGAATCACATTTCCAT 1134
| || ||||| | ||||||| | || |||||||| | ||||||| || | ||||| |
Sbjct 1071 TTTGGATTTTA-CAATGCTGCTATAAATTTTGGTGT-GTCTGGGGGTGTCTCCTTTCCGT 1128
Query 1135 GGGGAAGCGAATACAAGAGCAAAGCTTCTTGTATACCTGAGAGGTTCTTCTTAGGTGGTA 1194
||||||||| |||| ||| | |||| | |||||| ||||| |||||||| ||||| |
Sbjct 1129 GGGGAAGCGGATACCAGAACCGTCCTTCATCTATACCAGAGAGATTCTTCTTGGGTGGCA 1188
Query 1195 ACAT-ATCACCTGTGTGTTCTTTGGGAGGACCATCTGCGTTATGGGGATTCAAGACTAGG 1253
| | ||| |||||||| || ||| | || ||||||||| | |||||||||||||| ||
Sbjct 1189 AT-TCATCGCCTGTGTGCTCCTTGAGTGGGCCATCTGCGCTGTGGGGATTCAAGACCAGA 1247
Query 1254 GGA-TTGGGTCCTAACGAGCCAAGGAGGGAAGTACAAGACGATGAGAGTGGTAACACATA 1312
||| |||| ||| | ||||||| |||| || | | | ||| |||| |||
Sbjct 1248 GGAGTTGG-TCCCAGTGAGCCAAAGAGG-AA--A---G--G-TGATAGTG--AAC----- 1290
Query 1313 TGAACGGGATTTTGTGGGAGGGGATGTTGCGGTCACTGCATTTGCAGACCTCTCTTTTGA 1372
| || ||||||| ||||| |||| || || ||||||||||| || ||||| |||||
Sbjct 1291 -G---GG-ATTTTGTTGGAGGAGATGCGGCAGTGACTGCATTTGCGGATCTCTCATTTGA 1345
Query 1373 TTTCCCATTGAAATGGTTCAGAGACAGAGGAATCCATGGTCATGTGTTTGCATGTGCCGG 1432
||| ||| ||| |||||| ||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 1346 TTTGCCAGTGAGATGGTTAAGAGAGAGAGGAATCCACGGTCATGTGTTTGCCTGTGCAGG 1405
Query 1433 TAATATGGCGGAA-TTATCAGAGAACAAGTATAGGAACTTCACTGCTCCAAAGTTCTTGG 1491
||||||||| || ||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 1406 GAATATGGCG-AAGTTATCAGAGAATGAGTTTAGAAACTTCACTGCTCCAAAGTTCTTGG 1464
Query 1492 AGACATTCAGAAGCT-CAGTTGGTGCAGGAATCGTGGTACCAACTAGTCTATTTCGCATG 1550
|||||||||||| || |||||||||| |||||||| ||||||| || ||||| || |||
Sbjct 1465 AGACATTCAGAA-CTTCAGTTGGTGCTGGAATCGTCTTACCAACAAGCCTATTCCGTATG 1523
Query 1551 GAGCTTAACTACTGCCACATACTGAAGAAACAAGAACACGATCGAGCGAAATCTGGATTT 1610
||||||||||||||||||||| |||||||||| |||||||||| ||||| ||| || ||
Sbjct 1524 GAGCTTAACTACTGCCACATATTGAAGAAACAGGAACACGATCAAGCGAGATCAGGGGTT 1583
Query 1611 TTCATGACATTCTC 1624
||| ||||||||||
Sbjct 1584 TTCTTGACATTCTC 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91666195170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5