BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487346
Length=620
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05530.1 | Symbols: | RING/U-box superfamily protein | chr5... 957 0.0
> AT5G05530.1 | Symbols: | RING/U-box superfamily protein | chr5:1635478-1636191
FORWARD LENGTH=714
Length=714
Score = 957 bits (518), Expect = 0.0
Identities = 587/621 (95%), Gaps = 2/621 (0%)
Strand=Plus/Plus
Query 1 GGGTGGACAAAGTCATGCAAAGGCAAAACAACCGGCGAGTCTTTTTCTACCCGATCAGTT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 1 GGGTGGACAAAGTCATGCAAAAGCAAAACAACCGGCGAGTCTTTTTCTACCCGGTCACTT 60
Query 61 TCACACCGCGCTTCCATTCAAATTCCGCAAGCCATTTTTCCATAACACTAGAGACTTTCC 120
|| ||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 61 TCTCACCGCGTTTCCATTCAAATTCCGCTAGCCATTTTTCCATCACACTAGCGACTTTCC 120
Query 121 GACGAGATATCTACCGTCCAATCGCCGGGAAAGAACGACTATTCGGACAGACATCACTAG 180
||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct 121 GACGAGACATCTACCGTCCGATCACCGGGAAAGAACGACTTTTCGGACAGACATCACTAG 180
Query 181 GTCGGCCACTTCAACTCAAATTCGAGATCCCTTCAGAGTTTCTAGCCA-CCTCCGACGTA 239
|||| |||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 181 GTCGACCACTTCAACTCAAATTCGAGATCTCTTCAGAGTTTCTAG-CAGCCTCCGACGTA 239
Query 240 GAAACATGCCGTCGACACGTGTCTTTTGTTTTGGCGGATGTTGAGCCAAGGATTCGGGAG 299
|||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GAAACATGTCTTCGACACGTGTCTCTTGTTTTGGCGGATGTTGAGCCAAGGATTCGGGAG 299
Query 300 ATCCTGGTTTTGTATGGCATTCAACTGATCGGAGAAAGTAGAGGAAGAGCTTTCGAGCTC 359
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 300 ATTCTGGTTTTGTATGGCATTCAACTCATCGGAGAAAGCAGAGGAAGAGCTTTCGAGCTC 359
Query 360 AAAGCCGATGCGGAAGATGTTGAATATCACTTGATGGAAGAAATTAAGGGCTGGACTACT 419
||||| || || ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 360 AAAGCTGAAGCAGAAGATGTTGAATATCACTTGATGGAAGAAAGTAAAGGCTGGACTACT 419
Query 420 TGTATCCCGGCCAAATCGATTACTCCGGTCAACGAATGTACTATATGCCTTGAGGAATTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTATCCCGGCCAAATCGATTACTCCGGTCAACGAATGTACTATATGCCTTGAGGAATTA 479
Query 480 TGCGACGACGAAGAATCTATAGAGACACATGATTGTTGTCATGTCTTTCATAAAGTCTGT 539
||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 480 TGCCACGACGAAGAATCTATAGAGACACATGATTGTTGTCATGTTTTTCATAAACTCTGT 539
Query 540 CTTTGGCGCTGGATTCGGACCAAGAGCTCTTGTCCTCTTTGTCGTCATCCTATATATTCA 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 540 CTTTGGCGCTGGATTCGGACCAAAAGCTCTTGTCCTCTTTGTCGTCATCCTATCTATTCA 599
Query 600 AGACCCAAATTTTAGGATTTT 620
|||||||| ||||||| ||||
Sbjct 600 AGACCCAAGTTTTAGGTTTTT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29889317465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5