BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487347
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | ... 2279 0.0
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | ... 337 2e-91
> AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2
| chr5:1636298-1638939 FORWARD LENGTH=1702
Length=1702
Score = 2279 bits (1234), Expect = 0.0
Identities = 1448/1549 (93%), Gaps = 24/1549 (2%)
Strand=Plus/Plus
Query 1 GTGAAGTCACGTGACTATTATAGATTATACCACGTGTTATCAATCTGTCT-C-TTACGAG 58
||||||||||||||| |||||||||||| |||||||| ||||||||||| | |||||||
Sbjct 11 GTGAAGTCACGTGACCATTATAGATTAT-GCACGTGTTGTCAATCTGTCTCCTTTACGAG 69
Query 59 GGCTAGCGAGTCGCCGCCGTCAGAAGCTTTCCTTTCCGCTGTCTGAATCGGTTATGGAGG 118
||| |||||| |||||||||||||||| |||| ||| ||||||||||||||| |||||||
Sbjct 70 GGCGAGCGAGCCGCCGCCGTCAGAAGC-TTCCGTTCTGCTGTCTGAATCGGTCATGGAGG 128
Query 119 ACGTGCTAGCCACGGCAGAGGGAGAGGTTTTAGTAAAGCTGGTGAAGTTAGCGCAAAAGC 178
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 129 ACGTGCTAGCCACGGCAGAGGGAGTGGTTTTAGTAAAGCTGGTGAAGGTAGCGCAAAAGC 188
Query 179 TAGGTTTACAAGG-CAAACACGGATCATGGAAGGAATTTCTAGATTTTTACGACAAACAG 237
||||| || |||| ||| ||||| | |||||||| ||| |||||||||| |||||||||
Sbjct 189 TAGGTCTAAAAGGTGAAA-ACGGAACTTGGAAGGAGTTTTTAGATTTTTATGACAAACAG 247
Query 238 TTAGGATCTTCGAGCTTGAGTGATCCTTCAAAGCGGCGCAAAGATGATTTGGTCGCTTTT 297
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 248 CTAGGATCTTCGAGCTTAAGTGATCCTTCAAAGCGGCGCAAAGATGATTTGGTGGCTTTT 307
Query 298 CTTACTACACTCAAGAAGAAAGAAGATTTGCAGCTGTTGGCTAGGGT-TCTGAAACTCGA 356
||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 308 CTTACTACACTCAAGAAGAAAGAAGATTTGCAGCTGTTGGCTA-AGTCTCTCAAACTCGA 366
Query 357 CAATGATGTTTTTGAGAAATTCAGAAAGAAATCTCCGGATGAAACCA-CTGAGCAGAGGC 415
||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||
Sbjct 367 CAATGATGTTTTTGAGAAATTCAAAAAGAAATCTTTGGATGAGA-CAGCTGAGCAGAGGC 425
Query 416 TAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACG 485
Query 476 CCGAGGATTGGGTCATAACAGGGCTTGGGAAGAAAAAGATGGAACCGACCAAGATCGAAA 535
| ||||||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 486 CTGAGGATTGGGTTAGAACAGGGCTTGGCAAGAAGAAGATGGAACCGACAAAGATCGAAA 545
Query 536 TGATTGCCATTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTCTCGTTAGAG 595
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 546 TGATTGCCATTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTTGTTAGAG 605
Query 596 TTGCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGACGAATTCGTGAAACCGAATCAAC 655
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 606 TTGCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAAC 665
Query 656 CAGTTGTTGACTATAGGACTTTTATTACTGGACTTACTGCTCAAGATCTTGAAAAGGCTA 715
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 666 CGGTTGTTGACTATAGGACTTTCATTACTGGACTTACTGCTCAAGATCTTGAAAAGGCTA 725
Query 716 CTCTATCCGTGGTAGATATACAGGAAAAATTGCTGATGTTTCTCTCAGAGGATACAATTT 775
|| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 726 CTATATCTGTGGTAGATATACAGGAAAAATTGCTGATGTTTATCTCTGAGGATACAATTT 785
Query 776 TGGTAGGTCAAAGTTTGAACCATGATCTTAAAGTATTGAAGATGGATCATGCCAGAGTAA 835
|||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 786 TGGTTGGTCAAAGTTTGAACCATGATCTAAAAGTATTGAAGGTGGATCATGCCAGAGTAA 845
Query 836 TAGATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTA 895
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TTGATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTA 905
Query 896 AAAGACCTTCTTTGAATCATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAAG 955
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AAAGACCTTCTTTGAATTATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAAG 965
Query 956 GTGTTCCCCACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1015
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GTGTTCCACACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1025
Query 1016 TAGAGAATGGAGTAGAGACCTCCGTTCCACTATCTAAAGAGATGTTGGAAGCTGAGAAGT 1075
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TAGATAATGGAGCAGAGACCTCCGTTCCACTATCTAAAGAGATGTTGGAAGCTGAGAAGT 1085
Query 1076 CAAAGCTCTACCTCCATAGAATCCCTTGCAATGTCCCATATGAAGAGTTAAATGGAGTTG 1135
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1086 CAAAGCTCTACCTTCATAGAATCCCTTGCAATGTTCCATATGAAGAGTTAAATGGAGTCG 1145
Query 1136 TTTCCAGGGATATCCCACATGAAGTTAAGCCGTCGAAAAAACAAGATCGTCACTACTATA 1195
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1146 TTTCCAGGGATATCCCACATGAAGTTAAGCCGTCGAAAAAACAAGACCGTCACTACTATA 1205
Query 1196 GCGCAATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAACATTGCTG 1255
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GCGCGATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAACATTGCTG 1265
Query 1256 GAGACTTGGGAAAGGATTCGACGGGGTTGTCACAAAAACAGGTCTTTCTAGAGCCGAGTT 1315
||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1266 GAGACTTTGGAAAGGATTCGAGGGGGTTGTCACAAAAACAGATCTTTCTAGAGCCGAGTT 1325
Query 1316 CATCAGGGCCTAGAT-ACAT-T-CTCATTCGTAAAATGGTCGAAGATGATTTGGTTGGGG 1372
|||||| ||||||| | || | ||| |||||||||||||||||||||||||||||||||
Sbjct 1326 CATCAGAACCTAGATTATATGTTCTCGTTCGTAAAATGGTCGAAGATGATTTGGTTGGGG 1385
Query 1373 AAGTC-TCTGCagaggagaagaatgcgagttctaagaaacggaagagagaaaaagattct 1431
||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1386 AAGTCATA-GCAGAGGAGAATAATGCGAGTTCTAAGAAACGGAAGAGAGAAAATCATTCT 1444
Query 1432 aaagagaccagagagagacgcagaTGTAAACCATTG-CGTAGAAAGAAA-CAGAGAAGCT 1489
|||| ||||||||| |||||||| |||||||||||| | ||| |||| |||||||||
Sbjct 1445 AAAGGGACCAGAGATAGACGCAGGTGTAAACCATTGTCC-AGAC-GAAAACAGAGAAGCA 1502
Query 1490 ATGTGAACCGAAGA---TAATA-CAAAGGAAAATCAAGAACTGAAAGCA 1534
|||| || |||||| ||||| ||| ||||||||||||||| ||||||
Sbjct 1503 ATGTCAAACGAAGAAGATAATATCAA-GGAAAATCAAGAACTCAAAGCA 1550
> AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1
| chr3:18578353-18580594 FORWARD LENGTH=1288
Length=1288
Score = 337 bits (182), Expect = 2e-91
Identities = 558/732 (76%), Gaps = 56/732 (8%)
Strand=Plus/Plus
Query 545 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTCTCGTTAGAGTTGCTGCAG 604
||||||||||||||||||||||||||||||||| ||| | | | |||||||||| || |
Sbjct 486 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTG 545
Query 605 TTGACCGTGATTTAAAGGTGATTCTTGACGAATTCGTGAAACCGAATCAA-CCAGTTGTT 663
| ||||||||||||||||||||||||||||| || ||||||||||| ||| || ||||||
Sbjct 546 TAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAA-CAAACCTGTTGTT 604
Query 664 GACTATAGGACTTTTATTACTGG-ACTTACTGCTCAAGATCTTGAAAAGGCTACTCTATC 722
||||||||||| ||||| || | |||||||| ||||| | ||||| |||| ||| ||
Sbjct 605 GACTATAGGACAGACATTACAGGGA-TTACTGCTGAAGATATCGAAAATGCTAGTCTCTC 663
Query 723 CGTGGTAGATATACAGGAAAAATTGCTGATGTTTCTCTC-A-GAGGATACAATTTTGGTA 780
||||||||||||||||||| |||| | ||||| || | | || ||| ||||||||
Sbjct 664 TGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACG-GG-TACGATTTTGGTT 721
Query 781 GGTCAAAGTTTGAACC-ATGATCTTA-AAGTATTGAAGATGGATCATGCC-AGAGTAATA 837
||||| ||||| ||| | ||| || |||| || ||||| |||||| || | ||||||
Sbjct 722 GGTCACAGTTTAAACAGA-GAT-TTGGAAGTGTTAAAGATAGATCAT-CCTAAAGTAATC 778
Query 838 GATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTAAA 897
||||| ||||||| || |||||| | | | |||| ||| || | | || |
Sbjct 779 GATACCGCACTTGTATTCAAGTATC-CGA--A---TACACGAAAGC-TC-A-GA---A-- 824
Query 898 AGACCTTCT-TTGAATCATC-TGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAA- 954
||||||| || || || | | ||||||| ||| ||||| || ||||| | ||||||
Sbjct 825 -GACCTTCACTT-AA-CAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCC-GAAAGACC 880
Query 955 GGTGTTCCCCACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATA 1014
|||||||| || ||||||| ||||| ||| |||||| |||||||||| ||||||| |
Sbjct 881 GGTGTTCCTCATGATTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTT 940
Query 1015 CTAGAGAATGGAGTAGAGACCTCCGTTCCA-CTATCTAAAGAGATGTTGGAAGCTGAGAA 1073
||||||| |||| || || | | | | | |||||||||||||||||| | ||||||
Sbjct 941 GTAGAGAAAAGAGTTGACACAACAAT-CAAACCATCTAAAGAGATGTTGGAGGTTGAGAA 999
Query 1074 -GTCAAAGCTCTACCTCCATAGAATCCCTTGCAATGTCCCATATGAAGAG-TTAAATGGA 1131
| |||| |||| || |||| ||||||| |||||| |||| ||||||| || | | |
Sbjct 1000 AG-CAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGA--GCA 1056
Query 1132 -GTTGTTTCCAGGGA--TATCCCACATGAAGTTAAGCC-GTCGAAAAA-ACAAG-ATCGT 1185
||| |||| || | | | | || ||| || |||| | | ||||| ||| | | |||
Sbjct 1057 AGTTCTTTCT-GGAAAGTTTAC-ACTTGATGTGAAGCAAG-C-AAAAACACAGGGA-CGT 1111
Query 1186 CACTACTATAGCGCAATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAA 1245
|||| | | | ||| ||| | |||| | ||| ||||||| ||| ||||||||||||||
Sbjct 1112 TACTA-T-T-GTGCATTTGCTCTTTTCCATAGTTCAGAAGACGCAGATCAAGCATTTGAA 1168
Query 1246 AACATTGCTGGA 1257
|||||| ||||
Sbjct 1169 CACATTGATGGA 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5