BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487349 Length=976 Score E Sequences producing significant alignments: (Bits) Value AT5G05550.2 | Symbols: | sequence-specific DNA binding transcr... 1079 0.0 > AT5G05550.2 | Symbols: | sequence-specific DNA binding transcription factors | chr5:1639032-1640606 REVERSE LENGTH=1207 Length=1207 Score = 1079 bits (584), Expect = 0.0 Identities = 672/714 (94%), Gaps = 8/714 (1%) Strand=Plus/Plus Query 6 GACGACGCCGCAGTCAAAACCGAGTGTGTCTCACCGTCCACCGGTGGGAAGAGAAGACTG 65 ||||||||||||||||||| | |||||||| ||||| || ||| |||||||||||||||| Sbjct 65 GACGACGCCGCAGTCAAAATCAAGTGTGTCCCACCGACCGCCGTTGGGAAGAGAAGACTG 124 Query 66 GTGGAGCGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGGAATCGTTACGTCAAGCT 125 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 125 GTGGAGTGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGCAATCGTTACGTCAAGCT 184 Query 126 CAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 GAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 244 Query 186 GCACGGTGATAACGGCCGTAAGAAGACCGA-TATACAGTGTAAGAACCGGATCGATACTT 244 |||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct 245 ACACGGTGATAACAGCCGTAAGAAGACCGACT-TACAGTGTAAGAACCGGGTCGATACTT 303 Query 245 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCTACTTGGCGTTTCTATA 304 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 304 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCGACTTGGCGTTTCTATA 363 Query 305 ACCGCCTCGATGTTCTAATCGGTCCGGTTGTGAAGAAATCTGCTGGTGGAGTTGTCAAAT 364 ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 364 ACCGCCTCGATGTTCTAATCGGTCCCGTTGTGAAGAAATCGGCTGGCGGAGTTGTCAAAT 423 Query 365 CAGCGCCTTTTATAAACCCTAGTCATCTGAATCCGACTGGATCGAAGTCTAATGGAAGCT 424 |||||||||||| | | | |||||||||||| ||||||||||| |||| |||||||| Sbjct 424 CAGCGCCTTTTA-AGA----A-TCATCTGAATCCAACTGGATCGAACTCTACTGGAAGCT 477 Query 425 CACTtgacgatgatgatgacgatgatgatgaGGTTGGTGATTGGGAATTCGTTGCGAGGA 484 | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 478 CTCTTGAAGATGATGATGAGGATGATGATGAGGTTGGTGATTGGGAATTCGTTGCTAGGA 537 Query 485 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCGACGTGTAGGGAACTAGTTA 544 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 538 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCAACGTGTAGGGAACTAGCTA 597 Query 545 CGGCGATTCTGAAGTTTGGAGAAGTTTACGAGAGAATTGAGGGGAAGAAGCAACAGATGA 604 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 598 CGGCGATTCTCAAGTTTGGAGAAGTTTACGAGAGAATTGAAGGGAAGAAGCAACAGATGA 657 Query 605 TGCTTGAATTAGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTGGAGTTACAACGAATGA 664 || |||| || |||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 658 TGATTGAGTTGGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTAGAGTTAAAACGAATGA 717 Query 665 ACATGTTGATGGAGATGCAATTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 718 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 718 ACATGTTGATGGAGATGCAGTTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 771 Score = 307 bits (166), Expect = 1e-82 Identities = 230/258 (89%), Gaps = 15/258 (6%) Strand=Plus/Plus Query 728 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAACTACCATGGTGACGCAAAGAGGAA 787 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 879 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAAATACCATGGTGAAGCAAAGAGGAG 938 Query 788 TTACTTGAATCTGAAGCTCATT-AACATTGGAGGGTCCTGTT-C------TAATCTGTAG 839 |||||||||||||||||||||| || |||||||| ||||||| | |||||||||| Sbjct 939 TTACTTGAATCTGAAGCTCATTGAA-ATTGGAGGATCCTGTTACTTGTTTTAATCTGTAG 997 Query 840 GATAAAAGTTAGACAACTCTTTAGGATGCCTTTGTTTGTTTTCTTCTACTTTCTAGCGTT 899 ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 998 GATGGAAGTTAGAGAACTCTTTAGGATGTCTTTGTTTGTTTTCTTCTACTTTCTAGCGTG 1057 Query 900 TTAGGGTGTACATTGTTGTTGTAATGGAGCAAATCTTCCTTAACTCTT-AGTATCTGACA 958 |||| ||||||||| || ||| |||||||||||||||||||||||| |||| |||||| Sbjct 1058 TTAG--TGTACATTG--GT-GTACTGGAGCAAATCTTCCTTAACTCTTTAGTAGCTGACA 1112 Query 959 AGTATGATGTACTTTTGT 976 |||||||| ||| ||||| Sbjct 1113 AGTATGATCTACATTTGT 1130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47772673797 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5