BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487349
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05550.2 | Symbols: | sequence-specific DNA binding transcr... 1079 0.0
> AT5G05550.2 | Symbols: | sequence-specific DNA binding transcription
factors | chr5:1639032-1640606 REVERSE LENGTH=1207
Length=1207
Score = 1079 bits (584), Expect = 0.0
Identities = 672/714 (94%), Gaps = 8/714 (1%)
Strand=Plus/Plus
Query 6 GACGACGCCGCAGTCAAAACCGAGTGTGTCTCACCGTCCACCGGTGGGAAGAGAAGACTG 65
||||||||||||||||||| | |||||||| ||||| || ||| ||||||||||||||||
Sbjct 65 GACGACGCCGCAGTCAAAATCAAGTGTGTCCCACCGACCGCCGTTGGGAAGAGAAGACTG 124
Query 66 GTGGAGCGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGGAATCGTTACGTCAAGCT 125
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 125 GTGGAGTGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGCAATCGTTACGTCAAGCT 184
Query 126 CAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAG 244
Query 186 GCACGGTGATAACGGCCGTAAGAAGACCGA-TATACAGTGTAAGAACCGGATCGATACTT 244
|||||||||||| |||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 245 ACACGGTGATAACAGCCGTAAGAAGACCGACT-TACAGTGTAAGAACCGGGTCGATACTT 303
Query 245 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCTACTTGGCGTTTCTATA 304
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 304 TGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCGACTTGGCGTTTCTATA 363
Query 305 ACCGCCTCGATGTTCTAATCGGTCCGGTTGTGAAGAAATCTGCTGGTGGAGTTGTCAAAT 364
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 364 ACCGCCTCGATGTTCTAATCGGTCCCGTTGTGAAGAAATCGGCTGGCGGAGTTGTCAAAT 423
Query 365 CAGCGCCTTTTATAAACCCTAGTCATCTGAATCCGACTGGATCGAAGTCTAATGGAAGCT 424
|||||||||||| | | | |||||||||||| ||||||||||| |||| ||||||||
Sbjct 424 CAGCGCCTTTTA-AGA----A-TCATCTGAATCCAACTGGATCGAACTCTACTGGAAGCT 477
Query 425 CACTtgacgatgatgatgacgatgatgatgaGGTTGGTGATTGGGAATTCGTTGCGAGGA 484
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 CTCTTGAAGATGATGATGAGGATGATGATGAGGTTGGTGATTGGGAATTCGTTGCTAGGA 537
Query 485 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCGACGTGTAGGGAACTAGTTA 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 538 AGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCAACGTGTAGGGAACTAGCTA 597
Query 545 CGGCGATTCTGAAGTTTGGAGAAGTTTACGAGAGAATTGAGGGGAAGAAGCAACAGATGA 604
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 CGGCGATTCTCAAGTTTGGAGAAGTTTACGAGAGAATTGAAGGGAAGAAGCAACAGATGA 657
Query 605 TGCTTGAATTAGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTGGAGTTACAACGAATGA 664
|| |||| || |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 658 TGATTGAGTTGGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTAGAGTTAAAACGAATGA 717
Query 665 ACATGTTGATGGAGATGCAATTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 718
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 ACATGTTGATGGAGATGCAGTTAGAGATTGAGAAATCAAAGCACCGGAAACGCG 771
Score = 307 bits (166), Expect = 1e-82
Identities = 230/258 (89%), Gaps = 15/258 (6%)
Strand=Plus/Plus
Query 728 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAACTACCATGGTGACGCAAAGAGGAA 787
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 879 CAGGTAAGCAATTGTAGAATTAGATTGGTGGAGGAAATACCATGGTGAAGCAAAGAGGAG 938
Query 788 TTACTTGAATCTGAAGCTCATT-AACATTGGAGGGTCCTGTT-C------TAATCTGTAG 839
|||||||||||||||||||||| || |||||||| ||||||| | ||||||||||
Sbjct 939 TTACTTGAATCTGAAGCTCATTGAA-ATTGGAGGATCCTGTTACTTGTTTTAATCTGTAG 997
Query 840 GATAAAAGTTAGACAACTCTTTAGGATGCCTTTGTTTGTTTTCTTCTACTTTCTAGCGTT 899
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 998 GATGGAAGTTAGAGAACTCTTTAGGATGTCTTTGTTTGTTTTCTTCTACTTTCTAGCGTG 1057
Query 900 TTAGGGTGTACATTGTTGTTGTAATGGAGCAAATCTTCCTTAACTCTT-AGTATCTGACA 958
|||| ||||||||| || ||| |||||||||||||||||||||||| |||| ||||||
Sbjct 1058 TTAG--TGTACATTG--GT-GTACTGGAGCAAATCTTCCTTAACTCTTTAGTAGCTGACA 1112
Query 959 AGTATGATGTACTTTTGT 976
|||||||| ||| |||||
Sbjct 1113 AGTATGATCTACATTTGT 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5