BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487353
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05580.1 | Symbols: FAD8 | fatty acid desaturase 8 | chr5:16... 2553 0.0
AT3G11170.1 | Symbols: FAD7, FADD | fatty acid desaturase 7 | c... 1158 0.0
> AT5G05580.1 | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664134-1666527
FORWARD LENGTH=1687
Length=1687
Score = 2553 bits (1382), Expect = 0.0
Identities = 1571/1658 (95%), Gaps = 29/1658 (2%)
Strand=Plus/Plus
Query 1 GAAAGACGACCTCATAAAGAAATAGCCTTCGAGCTAGAAAATCACAGAGAAGACTGATTA 60
|||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 GAAAGAGGACCTCATATAGAAATAGCCTTCGAGCTAGAAAAGCACATAGAAGACTGATTA 60
Query 61 AGAGAGAT--AC-ACGACGACAAGGATCGACCAACACAGAATCCAtctctctttctctct 117
||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 CGAGAGATAGACGACGACGACAAGGATCAACCAACACAGAATCCATCTCTCTATCTCTCT 120
Query 118 ccacattctctcttcactcagagagtgcaaat------------a-tttttcctcttctc 164
|| || |||||||| ||||||||||||||| | ||||||||||| ||
Sbjct 121 --ACGTTATCTCTTCATTCAGAGAGTGCAAATAGAACGACAGAGACTTTTTCCTCTTTTC 178
Query 165 ttcttGGGTAGA-GCTCCAATGGCGAGCTCGATTTTATCAGAATGTGGTATTAGACCTCT 223
|||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 179 TTCTTGGGAAGAGGCTCCAATGGCGAGCTCGGTTTTATCAGAATGTGGTTTTAGACCTCT 238
Query 224 CCCCAGATTCTACCCTAACCCCACAACCTCTTTTGCCTCTAACCCTAAACCTACTTTCAA 283
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 239 CCCCAGATTCTACCCTAAACACACAACCTCTTTTGCCTCTAACCCTAAACCCACTTTCAA 298
Query 284 ATTCAATCCACC-CGTCAAACCTCCTTCTTCTTC-TCTCAATTCCCTATATGGGTTCTGC 341
|||||||||||| | | |||||||||||||| || ||||||||||| |||||| |||| |
Sbjct 299 ATTCAATCCACCAC-TTAAACCTCCTTCTTC-TCTTCTCAATTCCCGATATGGATTCTAC 356
Query 342 TCTAAAACCAGGAACTGGGCATTGAATGTGGCAACGCCTTTAACAACTCTTCAGTCTCCA 401
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 TCTAAAACCAGGAACTGGGCATTGAATGTGGCAACACCTTTAACAACTCTTCAGTCTCCA 416
Query 402 TCCGAAGAAGACACTGACAGATTCGACCCAGGTGCACCTCCTCCCTTCAATTTGGCAGAT 461
||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 417 TCCGAGGAAGACACGGAGAGATTCGACCCAGGTGCGCCTCCTCCCTTCAATTTGGCGGAT 476
Query 462 ATAAGAGCAGCCATACCTAAGCATTGTTGGATTAAGAATCCATGGATGTCAATGAGTTAT 521
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 477 ATAAGAGCAGCCATACCTAAGCATTGTTGGGTTAAGAATCCATGGATGTCTATGAGTTAT 536
Query 522 GTTGTCAGAGATGTTGCTGTCGTCTTTGGATTGGCTGCT-TTAGCTGCTTACTTCAACAA 580
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 537 GTTGTCAGAGATGTTGCTATCGTCTTTGGATTGGCTGCTGTT-GCTGCTTACTTCAACAA 595
Query 581 TTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGT 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGT 655
Query 641 CCTTGGCCATGACTGCGGACACGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGC 700
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 CCTTGGCCATGACTGCGGACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGC 715
Query 701 TGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTGGAGAATTAGCCACAG 760
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 TGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTGGAGGATTAGCCACAG 775
Query 761 AACTCACCACCAGAACCATGGGCATGCCGAGAATGACGAATCATGGCATCCTTTGCCTGA 820
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 776 AACTCACCACCAGAACCATGGTCATGTCGAGAATGACGAATCATGGCATCCTTTGCCTGA 835
Query 821 AAGCATCTACAAGAATTTGGAAAAAACGACTCAAATGTTTAGGTTTACACTGCCTTTTCC 880
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 836 AAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTTAGGTTTACACTGCCTTTTCC 895
Query 881 AATGCTCGCATATCCTTTCTATTTGTGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTA 940
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 896 AATGCTCGCATACCCTTTCTACTTGTGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTA 955
Query 941 TCATCCGGACAGTGACTTGTTTCTTCCAAAAGAGAAGAAAGATGTTGTGACATCAACTGC 1000
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 956 TCATCCGGACAGTGACTTGTTTCTTCCAAAAGAGAAGAAAGATGTTCTGACATCAACTGC 1015
Query 1001 CTGTTGGACTGCAATGGCTGCTTTGCTTGTTTGTCTCAACTTTGTCATCGGTCCAATCCA 1060
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1016 CTGTTGGACTGCAATGGCTGCTTTGCTTGTTTGTCTCAACTTTGTCATGGGTCCAATCCA 1075
Query 1061 AATGCTCAAACTATATGGCATCCCTTACTGGATATTTGTAATGTGGTTGGACTTCGTCAC 1120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1076 GATGCTCAAACTATATGGCATCCCTTATTGGATATTTGTAATGTGGTTGGACTTCGTCAC 1135
Query 1121 TTACTTGCATCACCATGGACATGAAGACAAGCTTCCTTGGTACCGTGGAAAGGAATGGAG 1180
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1136 TTACTTGCACCACCATGGACATGAAGACAAGCTCCCTTGGTATCGTGGAAAGGAATGGAG 1195
Query 1181 TTACCTGAGAGGAGGGCTCACAACATTGGATCGTGATTACGGATGGATCAATAACATCCA 1240
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1196 TTACCTGAGAGGAGGGCTCACAACATTAGATCGTGACTACGGATGGATCAATAACATCCA 1255
Query 1241 CCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCT 1315
Query 1301 AGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGAAAGTACTACAGAGAACCGAAAAA 1360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 AGTAGAAGCAACAGAAGCAGCTAAACCAGTACTAGGAAAGTACTACAGAGAACCGAAAAA 1375
Query 1361 CTCTGGACCTCTGCCACTTCACTTACTGGGAAGCCTCATAAAAAGTATGAAACAAGACCA 1420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1376 CTCTGGACCTCTGCCACTTCACTTACTGGGAAGCCTCATAAAGAGTATGAAACAAGACCA 1435
Query 1421 TTTCGTAAGCAATACAGGAGATGTCGTGTACTATGAGGCAGATCCAAAACTCAATGGACA 1480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTTCGTAAGCGATACAGGAGATGTCGTGTACTATGAGGCAGATCCAAAACTCAATGGACA 1495
Query 1481 AAGAACATGACGACAGACTGCAATGAACCAGG-AGACAAGTTA--TAAATTCATCTTGGC 1537
|||||||||| |||| |||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 1496 AAGAACATGAGGACATACTGCAGTGAACCAGGCAGACAAGTTACATAAATTCATCTTGGC 1555
Query 1538 CCATTCATTATGTTCTTTTTGTTTTGGTGTAAAGCCTTTGCGAGATTGAAAA-GCATTCA 1596
||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
Sbjct 1556 CCATTCATTATGTTCTTTTTGTTTTGGTGTAAAGCCTTTTCGAGATTAAAAAAGCATTAA 1615
Query 1597 TTTGTAGAAACAAGTGGTAAAACTCTCGATCTAATGAA 1634
||||||||||| |||||||||||||||||| ||||||
Sbjct 1616 TTTGTAGAAACCTGTGGTAAAACTCTCGATCAAATGAA 1653
> AT3G11170.1 | Symbols: FAD7, FADD | fatty acid desaturase 7 |
chr3:3499801-3502452 FORWARD LENGTH=1825
Length=1825
Score = 1158 bits (627), Expect = 0.0
Identities = 948/1101 (86%), Gaps = 29/1101 (3%)
Strand=Plus/Plus
Query 394 AGTCTCCATCCGAAGAAGACACT-GAC--AGATTCGACCCAGGTGCACCTCCTCCCTTCA 450
||||||||| || ||||| | | || |||||||| |||||||| |||||||| ||||
Sbjct 388 AGTCTCCATTGGAGGAAGATAATAAACAGAGATTCGATCCAGGTGCGCCTCCTCCGTTCA 447
Query 451 ATTTGGCAGATATAAGAGCAGCCATACCTAAGCATTGTTGGATTAAGAATCCATGGATGT 510
|||| || ||||| |||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 448 ATTTAGCTGATATTAGAGCAGCTATACCTAAGCATTGTTGGGTTAAGAATCCATGGAAGT 507
Query 511 CAATGAGTTATGTTGTCAGAGATGTTGCTGTCGTCTTTGGATTGGCTGCTTTAGCTGCTT 570
| |||||||||| |||||||| || ||| ||||||||| |||||||||| ||||||||
Sbjct 508 CTTTGAGTTATGTCGTCAGAGACGTCGCTATCGTCTTTGCATTGGCTGCTGGAGCTGCTT 567
Query 571 ACTTCAACAATTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGG 630
|| ||||||||||| || | ||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 568 ACCTCAACAATTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGG 627
Query 631 CTCTCTTTGTCCTTGGCCATGACTGCGGACACGGTAGCTTCTCGAATGATCCGAGGCTGA 690
|||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||| | |||
Sbjct 628 CTCTCTTTGTTCTTGGTCATGACTGTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGA 687
Query 691 ACAGTGTGGCT-GGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTGGAGA 749
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 688 ACAGTGTGG-TCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGGAGA 746
Query 750 ATTAGCCACAGAACTCACCACCAGAACCATGGGCATGCCGAGAATGACGAATCATGGCAT 809
||||| |||||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 747 ATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGACGAATCTTGGCAT 806
Query 810 CCTTTGCCTGA-AAGCATCTACAAGAATTTGGAAAAAACGACTCA-AATGTTTAGGTTTA 867
||| || |||| || |||||||| | |||||| || ||||| | | | ||||| ||||
Sbjct 807 CCTATGTCTGAGAA-AATCTACAATACTTTGGACAAGCCGACT-AGATTCTTTAGATTTA 864
Query 868 CACTGCCTTTTC-CAATGCTCGCATATCCTTTCTATTTGT-GGAACAGAAGTCCAGGGAA 925
||||||| | || ||||| ||||| |||||||| |||| || | ||||||| |||||
Sbjct 865 CACTGCC-TCTCGTGATGCTTGCATACCCTTTCTACTTGTGGGCTC-GAAGTCCGGGGAA 922
Query 926 ACAA-GGTTCTCATTATCATCCGGACAGTGACTTGTTTCTTCCAAAAGAGAAGAAA-GAT 983
| || ||||||||||| ||||| |||||||||||||| || || |||||| ||||| |||
Sbjct 923 A-AAGGGTTCTCATTACCATCCAGACAGTGACTTGTTCCTCCCTAAAGAG-AGAAAGGAT 980
Query 984 GTTGTGACATCAACTGCCTGTTGGACTGCAATGGCTGCTTTGCTTGTTTGTCTCAACTTT 1043
|| | || || ||||| ||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 981 GTCCTCACTTCTACTGCTTGTTGGACTGCAATGGCTGCTCTGCTTGTTTGTCTCAAC-TT 1039
Query 1044 GTC-ATCGGTCCAATCCAAATGCTCAAACTATATGGCATCCCTTACTGGATATTTGTAAT 1102
| ||||||||||| |||||||||||||| ||||| || |||||||||||| ||||||
Sbjct 1040 CACAATCGGTCCAATTCAAATGCTCAAACTTTATGGAATTCCTTACTGGATAAATGTAAT 1099
Query 1103 GTGGTTGGACTTCGTCACTTACTTGCATCACCATGGACATGAAGACAAGCTTCCTTGGTA 1162
|||||||||||| || |||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1100 GTGGTTGGACTTTGTGACTTACCTGCATCACCATGGTCATGAAGATAAGCTTCCTTGGTA 1159
Query 1163 CCGTGGAAAGGAATGGAGTTACCTGAGAGGAGGGCTCACAACATTGGATCGTGATTACGG 1222
|||||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1160 CCGTGGCAAGGAGTGGAGTTACCTGAGAGGAGGACTTACAACATTGGATCGTGACTACGG 1219
Query 1223 ATGGATCAATAACATCCACCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCA 1282
|| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1220 ATTGATCAATAACATCCATCATGATATTGGAACTCATGTGATACATCATCTTTTCCCGCA 1279
Query 1283 GATCCCACATTATCATCTAGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGAAAGTA 1342
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1280 GATCCCACATTATCATCTAGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGGAAGTA 1339
Query 1343 CTACAGAGAACC-GAAAAACTCTGGACC-TCTGCCACTT-CACTTACTGGGAAGCCTCAT 1399
||||| || || || || |||||||| | ||||| || || ||||||| || || |
Sbjct 1340 TTACAGGGAGCCTGATAAG-TCTGGACCGT-TGCCA-TTACATTTACTGGAAATTCT-AG 1395
Query 1400 A-AAAAGTATGAAACAAGACCATTTCGTAAGCAAT-ACAGGAGATGTCGTGTACTATGAG 1457
|||||||| ||| |||| |||| ||| ||| | | |||||| || || |||||| |
Sbjct 1396 CGAAAAGTATAAAAGAAGATCATTACGTGAGCGACGA-AGGAGAAGTTGTATACTATAAA 1454
Query 1458 GCAGATCCAAAACTCAATGGA 1478
||||||||||| ||| |||||
Sbjct 1455 GCAGATCCAAATCTCTATGGA 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80722476360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5